Difference between revisions of "NONHSAT127313"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GGGGAGATGGAAATGCGGAAATCACCGTCTTCTGTGTCGCTCAGGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTCGGCCATCTTGGCTCCTCTCCCTCTTTAAAGTGATTGCTCACTGATGCCTTATCTAGTTCTCTTGGTGAGGTCATGTTTTCCTGGATGGTCTTGGTGTTTGTGGATGTTCATCAATGTCAGGGCATTGAGAAGTTAGAATGTGATTTTGAAGAAAGGAGGAAAGATGTGAAAAGTGATTGGTCAGCCACATTCATGGTGTTGAGAAAAGAATTTGCTTTTCTGGAACATAGCCTGTGATAGCAGAACAACACCTGGCAAGAAACAGGTTATGTTTGGCTGGAGAGTCATTGGCACTATCAAGAAATATTAAAGTGTAGATTTGAGAGAGGAGGAGAAAGACCCAAGCAAAATTGAAAACCAGGTGGGACCCAGACAGCAGCAAAGCAATGGAAGCATGTATTTTGGTCAATATAGAGTTAATACACAATTTTGCCCCTCTTCTTCTGATCATGGGACTCATATTACCAGTCTTCACATTTCCTTTAAATTCAGGAATCAGGAAGAATTTCCAGAGTTTGCAGATGGACACATTTGCTGCTTCCATTCTAAACATAAGTTAGAAGAACCTTTCAACTGGATTCCAACTTTAATATGTCACAAACATAAAAAAGAAAGCTATTTCCTGGACTTTTCTTCATTAGAAATTAATAGATTGTCAATTGGCATAGGGAAAAGATAATCAACAGATGCCAACCCCAAGTTAACAGAAATGCTAAAATTATAAGACAAAGACTTCAAAATAGCTATTTTAATTTTGCCTAGTGAGGTAAATGCAAACATGCTCACTATGAATGAAAACAGGTAATCTCAGCAGTCATGTAAACTATAAAAATAAGCAAATATAAATTTTAGAATTAAAACACAATATCTAAAAATAAATTCACCTGATATTCTCAATAGAAAAAATGGTAATGCAGAGAAAAATGTATGAAAATATGGCAATTTGAAGAAGAGAGAAGAGATCAATAAAATAAATAAGTATATCCTTGGAGACCTGTGGATGTTTTTTGAAAAGTGAATCATGTAAGTAATTGAAGTCCCAGAAGAAAAGAAAAAAAGAGGATGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>GGGGAGATGGAAATGCGGAAATCACCGTCTTCTGTGTCGCTCAGGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTCGGCCATCTTGGCTCCTCTCCCTCTTTAAAGTGATTGCTCACTGATGCCTTATCTAGTTCTCTTGGTGAGGTCATGTTTTCCTGGATGGTCTTGGTGTTTGTGGATGTTCATCAATGTCAGGGCATTGAGAAGTTAGAATGTGATTTTGAAGAAAGGAGGAAAGATGTGAAAAGTGATTGGTCAGCCACATTCATGGTGTTGAGAAAAGAATTTGCTTTTCTGGAACATAGCCTGTGATAGCAGAACAACACCTGGCAAGAAACAGGTTATGTTTGGCTGGAGAGTCATTGGCACTATCAAGAAATATTAAAGTGTAGATTTGAGAGAGGAGGAGAAAGACCCAAGCAAAATTGAAAACCAGGTGGGACCCAGACAGCAGCAAAGCAATGGAAGCATGTATTTTGGTCAATATAGAGTTAATACACAATTTTGCCCCTCTTCTTCTGATCATGGGACTCATATTACCAGTCTTCACATTTCCTTTAAATTCAGGAATCAGGAAGAATTTCCAGAGTTTGCAGATGGACACATTTGCTGCTTCCATTCTAAACATAAGTTAGAAGAACCTTTCAACTGGATTCCAACTTTAATATGTCACAAACATAAAAAAGAAAGCTATTTCCTGGACTTTTCTTCATTAGAAATTAATAGATTGTCAATTGGCATAGGGAAAAGATAATCAACAGATGCCAACCCCAAGTTAACAGAAATGCTAAAATTATAAGACAAAGACTTCAAAATAGCTATTTTAATTTTGCCTAGTGAGGTAAATGCAAACATGCTCACTATGAATGAAAACAGGTAATCTCAGCAGTCATGTAAACTATAAAAATAAGCAAATATAAATTTTAGAATTAAAACACAATATCTAAAAATAAATTCACCTGATATTCTCAATAGAAAAAATGGTAATGCAGAGAAAAATGTATGAAAATATGGCAATTTGAAGAAGAGAGAAGAGATCAATAAAATAAATAAGTATATCCTTGGAGACCTGTGGATGTTTTTTGAAAAGTGAATCATGTAAGTAATTGAAGTCCCAGAAGAAAAGAAAAAAAGAGGATGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG050548]][[Category:Transcripts]] |
Latest revision as of 07:02, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT127313 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1175 nt |
| Genomic location |
chr8-:76135641..76190696 |
| Exon number |
4 |
| Exons |
76135641..76135646,76135653..76136593,76189222..76189325,76190592..76190696 |
| Genome context |
|
| Sequence |
000001 GGGGAGATGG AAATGCGGAA ATCACCGTCT TCTGTGTCGC TCAGGCTGGG AGCTGTAGAC CGGAGCTGTT CCTATTCGGC 000080
000081 CATCTTGGCT CCTCTCCCTC TTTAAAGTGA TTGCTCACTG ATGCCTTATC TAGTTCTCTT GGTGAGGTCA TGTTTTCCTG 000160 000161 GATGGTCTTG GTGTTTGTGG ATGTTCATCA ATGTCAGGGC ATTGAGAAGT TAGAATGTGA TTTTGAAGAA AGGAGGAAAG 000240 000241 ATGTGAAAAG TGATTGGTCA GCCACATTCA TGGTGTTGAG AAAAGAATTT GCTTTTCTGG AACATAGCCT GTGATAGCAG 000320 000321 AACAACACCT GGCAAGAAAC AGGTTATGTT TGGCTGGAGA GTCATTGGCA CTATCAAGAA ATATTAAAGT GTAGATTTGA 000400 000401 GAGAGGAGGA GAAAGACCCA AGCAAAATTG AAAACCAGGT GGGACCCAGA CAGCAGCAAA GCAATGGAAG CATGTATTTT 000480 000481 GGTCAATATA GAGTTAATAC ACAATTTTGC CCCTCTTCTT CTGATCATGG GACTCATATT ACCAGTCTTC ACATTTCCTT 000560 000561 TAAATTCAGG AATCAGGAAG AATTTCCAGA GTTTGCAGAT GGACACATTT GCTGCTTCCA TTCTAAACAT AAGTTAGAAG 000640 000641 AACCTTTCAA CTGGATTCCA ACTTTAATAT GTCACAAACA TAAAAAAGAA AGCTATTTCC TGGACTTTTC TTCATTAGAA 000720 000721 ATTAATAGAT TGTCAATTGG CATAGGGAAA AGATAATCAA CAGATGCCAA CCCCAAGTTA ACAGAAATGC TAAAATTATA 000800 000801 AGACAAAGAC TTCAAAATAG CTATTTTAAT TTTGCCTAGT GAGGTAAATG CAAACATGCT CACTATGAAT GAAAACAGGT 000880 000881 AATCTCAGCA GTCATGTAAA CTATAAAAAT AAGCAAATAT AAATTTTAGA ATTAAAACAC AATATCTAAA AATAAATTCA 000960 000961 CCTGATATTC TCAATAGAAA AAATGGTAAT GCAGAGAAAA ATGTATGAAA ATATGGCAAT TTGAAGAAGA GAGAAGAGAT 001040 001041 CAATAAAATA AATAAGTATA TCCTTGGAGA CCTGTGGATG TTTTTTGAAA AGTGAATCAT GTAAGTAATT GAAGTCCCAG 001120 001121 AAGAAAAGAA AAAAAGAGGA TGAGCAAAAA AAAAAAAAAA AAAAAAAAAA AAAAA |
Predicted Small Protein
| Name | NONHSAT127313_smProtein_149:313 |
| Length | 55 |
| Molecular weight | 6542.5204 |
| Aromaticity | 0.148148148148 |
| Instability index | 44.4907407407 |
| Isoelectric point | 5.16436767578 |
| Runs | 9 |
| Runs residual | 0.00397470641373 |
| Runs probability | 0.0484209699896 |
| Amino acid sequence | MFSWMVLVFVDVHQCQGIEKLECDFEERRKDVKSDWSATFMVLRKEFAFLEHSL |
| Secondary structure | LEEEEEEEEEELLLLLLLEEEELLHHHHHHLLLLLHHHHHHHHHHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
