Difference between revisions of "NONHSAT130368"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| (One intermediate revision by one other user not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>ATTTTTAACCCACGGGATACAGATTCAATGGTTGACACTTTTTATGCTATTGGACTTGTGATGCGACTTTGCCAATCCGTATCTCTCCTGGAACTGCTGCACATATATGTTGGCATTGAGTCAAACCATCTTCTCCCAAGGTTTTTGCAGGAGATTTTCCCCTCTGTCCTCTTCAATTAAGGGATGACCTGACATCATGGATAGCTTACAACTCTGGAAACCAGGAGACTTCGGATATATATATGTTTCCAGCTCACAGAAAGAATAATCATCCTTTTTGTGGTGATCACCAGTCAAGAGGAAGTCCAAGAGAAATATGTGGTGTGTGTTTTATTCGTCTTTTGGAATCTATTGGATATGGTTAGGTAAGAAGGCAAAATAATCTCTTAAAACAAGGCTAAATTGCTTTCTGCAGTGAAACCAGTACTAGCAGTAACCAGAGGTTACTTGGTACGAGAGAGGAAAACATAACCCCTTTTCAAATTATTTTATCTTGATATGGAAATGTATTTTTAGTGTTCTCCATAATGGGCATATCAAAGATAATGAAAACCTACCGTGGTATTACAAGAGTAAATCAGCACATTCAGGTTTCTGCAGAAGGCTTGGCATAAAACCAACTTGGAATAACCCTCAGCTGTTTCCTAACAAAGGCATTCCTCACAATTGCTTTAGTACGGTTGCTTTAATAAGCAAAGCAGGTCTTTTATTGTATCACCAGAATTTACAGTTAGTTTCTGTGCATTCAAGAATCTTTTAAATATAGGGCCTCTCAGGAAGAAAATGCACTCTCACATTCATTTACAATTCCAGTGGGTTCAAATGACTAACTTAAGTCCTTTTAGTGCTAATTCTAAAACTTTGCAGTGAGATGTGCCTAGTCTTACCTCTACAAGTGGTGGTGTCAAACAGTCCCCTTTGCTCAGTGAGTGCTTACGCCTCACTCTGGGGAGGTGTCCTAACTGCTAGGTCAGCTTTCCTAAATAAGAACCGTCCCTCCTACTTGAGAGATCTGGATTTGAATAGGTAACAAAAGAGCCCTAGTTTGTTTTTCAGCCAAGGGTATGTAAATTTTTTCATTATATTGTCAATAACTTAACTGAATTAAAATATGTTTAAATAATAA</dnaseq>| | sequence = <dnaseq>ATTTTTAACCCACGGGATACAGATTCAATGGTTGACACTTTTTATGCTATTGGACTTGTGATGCGACTTTGCCAATCCGTATCTCTCCTGGAACTGCTGCACATATATGTTGGCATTGAGTCAAACCATCTTCTCCCAAGGTTTTTGCAGGAGATTTTCCCCTCTGTCCTCTTCAATTAAGGGATGACCTGACATCATGGATAGCTTACAACTCTGGAAACCAGGAGACTTCGGATATATATATGTTTCCAGCTCACAGAAAGAATAATCATCCTTTTTGTGGTGATCACCAGTCAAGAGGAAGTCCAAGAGAAATATGTGGTGTGTGTTTTATTCGTCTTTTGGAATCTATTGGATATGGTTAGGTAAGAAGGCAAAATAATCTCTTAAAACAAGGCTAAATTGCTTTCTGCAGTGAAACCAGTACTAGCAGTAACCAGAGGTTACTTGGTACGAGAGAGGAAAACATAACCCCTTTTCAAATTATTTTATCTTGATATGGAAATGTATTTTTAGTGTTCTCCATAATGGGCATATCAAAGATAATGAAAACCTACCGTGGTATTACAAGAGTAAATCAGCACATTCAGGTTTCTGCAGAAGGCTTGGCATAAAACCAACTTGGAATAACCCTCAGCTGTTTCCTAACAAAGGCATTCCTCACAATTGCTTTAGTACGGTTGCTTTAATAAGCAAAGCAGGTCTTTTATTGTATCACCAGAATTTACAGTTAGTTTCTGTGCATTCAAGAATCTTTTAAATATAGGGCCTCTCAGGAAGAAAATGCACTCTCACATTCATTTACAATTCCAGTGGGTTCAAATGACTAACTTAAGTCCTTTTAGTGCTAATTCTAAAACTTTGCAGTGAGATGTGCCTAGTCTTACCTCTACAAGTGGTGGTGTCAAACAGTCCCCTTTGCTCAGTGAGTGCTTACGCCTCACTCTGGGGAGGTGTCCTAACTGCTAGGTCAGCTTTCCTAAATAAGAACCGTCCCTCCTACTTGAGAGATCTGGATTTGAATAGGTAACAAAAGAGCCCTAGTTTGTTTTTCAGCCAAGGGTATGTAAATTTTTTCATTATATTGTCAATAACTTAACTGAATTAAAATATGTTTAAATAATAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG051875]][[Category:Transcripts]] |
Latest revision as of 07:13, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT130368 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
1126 nt |
| Genomic location |
chr9-:21015136..21026744 |
| Exon number |
3 |
| Exons |
21015136..21016009,21017808..21017909,21026595..21026744 |
| Genome context |
|
| Sequence |
000001 ATTTTTAACC CACGGGATAC AGATTCAATG GTTGACACTT TTTATGCTAT TGGACTTGTG ATGCGACTTT GCCAATCCGT 000080
000081 ATCTCTCCTG GAACTGCTGC ACATATATGT TGGCATTGAG TCAAACCATC TTCTCCCAAG GTTTTTGCAG GAGATTTTCC 000160 000161 CCTCTGTCCT CTTCAATTAA GGGATGACCT GACATCATGG ATAGCTTACA ACTCTGGAAA CCAGGAGACT TCGGATATAT 000240 000241 ATATGTTTCC AGCTCACAGA AAGAATAATC ATCCTTTTTG TGGTGATCAC CAGTCAAGAG GAAGTCCAAG AGAAATATGT 000320 000321 GGTGTGTGTT TTATTCGTCT TTTGGAATCT ATTGGATATG GTTAGGTAAG AAGGCAAAAT AATCTCTTAA AACAAGGCTA 000400 000401 AATTGCTTTC TGCAGTGAAA CCAGTACTAG CAGTAACCAG AGGTTACTTG GTACGAGAGA GGAAAACATA ACCCCTTTTC 000480 000481 AAATTATTTT ATCTTGATAT GGAAATGTAT TTTTAGTGTT CTCCATAATG GGCATATCAA AGATAATGAA AACCTACCGT 000560 000561 GGTATTACAA GAGTAAATCA GCACATTCAG GTTTCTGCAG AAGGCTTGGC ATAAAACCAA CTTGGAATAA CCCTCAGCTG 000640 000641 TTTCCTAACA AAGGCATTCC TCACAATTGC TTTAGTACGG TTGCTTTAAT AAGCAAAGCA GGTCTTTTAT TGTATCACCA 000720 000721 GAATTTACAG TTAGTTTCTG TGCATTCAAG AATCTTTTAA ATATAGGGCC TCTCAGGAAG AAAATGCACT CTCACATTCA 000800 000801 TTTACAATTC CAGTGGGTTC AAATGACTAA CTTAAGTCCT TTTAGTGCTA ATTCTAAAAC TTTGCAGTGA GATGTGCCTA 000880 000881 GTCTTACCTC TACAAGTGGT GGTGTCAAAC AGTCCCCTTT GCTCAGTGAG TGCTTACGCC TCACTCTGGG GAGGTGTCCT 000960 000961 AACTGCTAGG TCAGCTTTCC TAAATAAGAA CCGTCCCTCC TACTTGAGAG ATCTGGATTT GAATAGGTAA CAAAAGAGCC 001040 001041 CTAGTTTGTT TTTCAGCCAA GGGTATGTAA ATTTTTTCAT TATATTGTCA ATAACTTAAC TGAATTAAAA TATGTTTAAA 001120 001121 TAATAA |
Predicted Small Protein
| Name | NONHSAT130368_smProtein_242:364 |
| Length | 41 |
| Molecular weight | 4531.1483 |
| Aromaticity | 0.1 |
| Instability index | 49.515 |
| Isoelectric point | 8.65850830078 |
| Runs | 6 |
| Runs residual | 0.0280241935484 |
| Runs probability | 0.0223458752871 |
| Amino acid sequence | MFPAHRKNNHPFCGDHQSRGSPREICGVCFIRLLESIGYG |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLLHHHLLLEEEHHHHHLLLL |
| PRMN | - |
| PiMo | - |
