Difference between revisions of "NONHSAT130933"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>AGTAACTGCCCCAACCACTACCACGTCCCCAAGTGCAACGGGACCCACGGAACTACAGGTGTGGGGCAGGGTGAGCGTGGAAGAAGGGACGCGGATGGGGGTGCGCTTTGCAGACGATCTGGAGACTGCTGTGTGTTGAGGGAAGATACGAAGTCGCGGGAGCAGTTGGGGACTCAATGTGTGGGCAACAAGGGTCCTGCTGAGCTCAGGAGCTGCACGGAATGGTGGCAGTCACCTTGCCAGTGCAGCAGGCATGGATCAGACTGCAAGCTAGGGGCACGAGGCATCAGTTGGGAAGAGGGGACGCACAGCTAGGCTTGAGGCCTCTTCATCGGGGTAAGTACCAGGGAGAAGAGGGGGAAGTGTGTCCAGTAAGAAGCCTGAGCTAAACCTGTCACCCTCTCAGGAGTTCTGAGAGTGGTCTCTATATTCCATTAGTCCATCCAGGGATTTGTACACATTCATCCTTGGGAACCCATCAAAGTCACCCCTTTAGGCAAGGAGAGGGTCTGAAACTCAGCTGGAAGGAAGAAGACTCATTGATTCCCCTGACCACCTTTTCTTCTCTTCTCTTACACAGATGTC</dnaseq>| | sequence = <dnaseq>AGTAACTGCCCCAACCACTACCACGTCCCCAAGTGCAACGGGACCCACGGAACTACAGGTGTGGGGCAGGGTGAGCGTGGAAGAAGGGACGCGGATGGGGGTGCGCTTTGCAGACGATCTGGAGACTGCTGTGTGTTGAGGGAAGATACGAAGTCGCGGGAGCAGTTGGGGACTCAATGTGTGGGCAACAAGGGTCCTGCTGAGCTCAGGAGCTGCACGGAATGGTGGCAGTCACCTTGCCAGTGCAGCAGGCATGGATCAGACTGCAAGCTAGGGGCACGAGGCATCAGTTGGGAAGAGGGGACGCACAGCTAGGCTTGAGGCCTCTTCATCGGGGTAAGTACCAGGGAGAAGAGGGGGAAGTGTGTCCAGTAAGAAGCCTGAGCTAAACCTGTCACCCTCTCAGGAGTTCTGAGAGTGGTCTCTATATTCCATTAGTCCATCCAGGGATTTGTACACATTCATCCTTGGGAACCCATCAAAGTCACCCCTTTAGGCAAGGAGAGGGTCTGAAACTCAGCTGGAAGGAAGAAGACTCATTGATTCCCCTGACCACCTTTTCTTCTCTTCTCTTACACAGATGTC</dnaseq>| | ||
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| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG052104]][[Category:Transcripts]] |
Latest revision as of 07:15, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT130933 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
585 nt |
| Genomic location |
chr9-:35108342..35115859 |
| Exon number |
2 |
| Exons |
35108342..35108734,35115668..35115859 |
| Genome context |
|
| Sequence |
000001 AGTAACTGCC CCAACCACTA CCACGTCCCC AAGTGCAACG GGACCCACGG AACTACAGGT GTGGGGCAGG GTGAGCGTGG 000080
000081 AAGAAGGGAC GCGGATGGGG GTGCGCTTTG CAGACGATCT GGAGACTGCT GTGTGTTGAG GGAAGATACG AAGTCGCGGG 000160 000161 AGCAGTTGGG GACTCAATGT GTGGGCAACA AGGGTCCTGC TGAGCTCAGG AGCTGCACGG AATGGTGGCA GTCACCTTGC 000240 000241 CAGTGCAGCA GGCATGGATC AGACTGCAAG CTAGGGGCAC GAGGCATCAG TTGGGAAGAG GGGACGCACA GCTAGGCTTG 000320 000321 AGGCCTCTTC ATCGGGGTAA GTACCAGGGA GAAGAGGGGG AAGTGTGTCC AGTAAGAAGC CTGAGCTAAA CCTGTCACCC 000400 000401 TCTCAGGAGT TCTGAGAGTG GTCTCTATAT TCCATTAGTC CATCCAGGGA TTTGTACACA TTCATCCTTG GGAACCCATC 000480 000481 AAAGTCACCC CTTTAGGCAA GGAGAGGGTC TGAAACTCAG CTGGAAGGAA GAAGACTCAT TGATTCCCCT GACCACCTTT 000560 000561 TCTTCTCTTC TCTTACACAG ATGTC |
Predicted Small Protein
| Name | NONHSAT130933_smProtein_221:388 |
| Length | 56 |
| Molecular weight | 6120.9872 |
| Aromaticity | 0.0363636363636 |
| Instability index | 45.6727272727 |
| Isoelectric point | 10.7129516602 |
| Runs | 9 |
| Runs residual | 0.0121212121212 |
| Runs probability | 0.0328073171211 |
| Amino acid sequence | MVAVTLPVQQAWIRLQARGTRHQLGRGDAQLGLRPLHRGKYQGEEGEVCPVRSLS |
| Secondary structure | LEEEELLHHHHHHHHHHLLLLLLLLLLLLEELLLLLLLLLLLLLLLEEEELLLLL |
| PRMN | - |
| PiMo | - |
