Difference between revisions of "NONHSAT130939"

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sequence = <dnaseq>TCCTTAGGAAAAGCCTAAGATTAGAGATCCAGAACTCTTACACCTTCATTTTTCTGCAGGAGAAGTGAGATGTGAGGCTCCCAATAACAAATTGGACAAATTCTCAGGAATACTGACCTATAAGGGGAAAAACTACTTCCTGGACCATGACAAGCTGCTACTCTGAGGCTGCAACATCAGGAATACAGATTGGTGCTATGGCTTGGTGATCTACACTGGGCCAGATACCAAATTAATGCAGAATAGTGGAAAGTCCACTTTTAAACGAACACAGATAGACCATCTCATGAATGTCCTTGTACTCTGGGCATCGTGTGTTTTGTCCTAGCAGTTGGGCATGGCATTTGGCAGAACAAGAAATGCTACCACTTCCAGATTTTTCTGCCATGGGTAAAATATGTCTCTTCATCAGCTGTCTCTGCCATCCTCATATTCTGGTCCTACTTCATTATTCTCAATACCATGGTGCCCATTTCCCTCTATGTCAGTGTTGAAATAATAAGATTGGGCAACAGTTTATATATCAACTGGGATCGGAAGATGTTTTATGCACCAAGGAACACACCAGCACAGGTGATACTTATGACAAGGATGGACAGAGGGTGACGGTCTCTGAGACAGTTTATGAGACCTGGTTTATCACATGCTACAGTCTGGTCTACACTTCCCTCCCTGTCCTGTGCATGAGTCTGTTTGATCAGTAACCCATAAGGAAGCTCCTAGGCAGCCTGGCAGCAGACCTGGTGAGGGGAGAAGCCTCTACTCTGATGGAGATGGGACCTTCTATGGAGAGACCCTGAGCCTCCCTCCTTACCCTCGGGTGCTTCCAGGATGTGAATGAGACATGGAGCCTCCATTTCCCAGAGCTGTATGAGCCAGGCCAGCACAACCTCTATTTCAACAAGAAAGAATTTGTGAAGTGTTT</dnaseq>|
 
sequence = <dnaseq>TCCTTAGGAAAAGCCTAAGATTAGAGATCCAGAACTCTTACACCTTCATTTTTCTGCAGGAGAAGTGAGATGTGAGGCTCCCAATAACAAATTGGACAAATTCTCAGGAATACTGACCTATAAGGGGAAAAACTACTTCCTGGACCATGACAAGCTGCTACTCTGAGGCTGCAACATCAGGAATACAGATTGGTGCTATGGCTTGGTGATCTACACTGGGCCAGATACCAAATTAATGCAGAATAGTGGAAAGTCCACTTTTAAACGAACACAGATAGACCATCTCATGAATGTCCTTGTACTCTGGGCATCGTGTGTTTTGTCCTAGCAGTTGGGCATGGCATTTGGCAGAACAAGAAATGCTACCACTTCCAGATTTTTCTGCCATGGGTAAAATATGTCTCTTCATCAGCTGTCTCTGCCATCCTCATATTCTGGTCCTACTTCATTATTCTCAATACCATGGTGCCCATTTCCCTCTATGTCAGTGTTGAAATAATAAGATTGGGCAACAGTTTATATATCAACTGGGATCGGAAGATGTTTTATGCACCAAGGAACACACCAGCACAGGTGATACTTATGACAAGGATGGACAGAGGGTGACGGTCTCTGAGACAGTTTATGAGACCTGGTTTATCACATGCTACAGTCTGGTCTACACTTCCCTCCCTGTCCTGTGCATGAGTCTGTTTGATCAGTAACCCATAAGGAAGCTCCTAGGCAGCCTGGCAGCAGACCTGGTGAGGGGAGAAGCCTCTACTCTGATGGAGATGGGACCTTCTATGGAGAGACCCTGAGCCTCCCTCCTTACCCTCGGGTGCTTCCAGGATGTGAATGAGACATGGAGCCTCCATTTCCCAGAGCTGTATGAGCCAGGCCAGCACAACCTCTATTTCAACAAGAAAGAATTTGTGAAGTGTTT</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG052109]][[Category:Transcripts]]

Latest revision as of 07:16, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT130939

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

925 nt

Genomic location

chr9+:35447171..35480136

Exon number

7

Exons

35447171..35447388,35449466..35449554,35469141..35469321,35471017..35471101,35473725..35473768,35478239..35478322,35479913..35480136

Genome context

Sequence
000001 TCCTTAGGAA AAGCCTAAGA TTAGAGATCC AGAACTCTTA CACCTTCATT TTTCTGCAGG AGAAGTGAGA TGTGAGGCTC 000080
000081 CCAATAACAA ATTGGACAAA TTCTCAGGAA TACTGACCTA TAAGGGGAAA AACTACTTCC TGGACCATGA CAAGCTGCTA 000160
000161 CTCTGAGGCT GCAACATCAG GAATACAGAT TGGTGCTATG GCTTGGTGAT CTACACTGGG CCAGATACCA AATTAATGCA 000240
000241 GAATAGTGGA AAGTCCACTT TTAAACGAAC ACAGATAGAC CATCTCATGA ATGTCCTTGT ACTCTGGGCA TCGTGTGTTT 000320
000321 TGTCCTAGCA GTTGGGCATG GCATTTGGCA GAACAAGAAA TGCTACCACT TCCAGATTTT TCTGCCATGG GTAAAATATG 000400
000401 TCTCTTCATC AGCTGTCTCT GCCATCCTCA TATTCTGGTC CTACTTCATT ATTCTCAATA CCATGGTGCC CATTTCCCTC 000480
000481 TATGTCAGTG TTGAAATAAT AAGATTGGGC AACAGTTTAT ATATCAACTG GGATCGGAAG ATGTTTTATG CACCAAGGAA 000560
000561 CACACCAGCA CAGGTGATAC TTATGACAAG GATGGACAGA GGGTGACGGT CTCTGAGACA GTTTATGAGA CCTGGTTTAT 000640
000641 CACATGCTAC AGTCTGGTCT ACACTTCCCT CCCTGTCCTG TGCATGAGTC TGTTTGATCA GTAACCCATA AGGAAGCTCC 000720
000721 TAGGCAGCCT GGCAGCAGAC CTGGTGAGGG GAGAAGCCTC TACTCTGATG GAGATGGGAC CTTCTATGGA GAGACCCTGA 000800
000801 GCCTCCCTCC TTACCCTCGG GTGCTTCCAG GATGTGAATG AGACATGGAG CCTCCATTTC CCAGAGCTGT ATGAGCCAGG 000880
000881 CCAGCACAAC CTCTATTTCA ACAAGAAAGA ATTTGTGAAG TGTTT
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Predicted Small Protein

Name NONHSAT130939_smProtein_290:493
Length 68
Molecular weight 7703.0248
Aromaticity 0.134328358209
Instability index 62.6641791045
Isoelectric point 6.62030029297
Runs 12
Runs residual 0.0357896381965
Runs probability 0.0773346876288
Amino acid sequence MSLYSGHRVFCPSSWAWHLAEQEMLPLPDFSAMGKICLFISCLCHPHILVLLHYSQYHGA
HFPLCQC
Secondary structure LLLLLLLEEELLLHHHHHHHHHHLLLLLLLHHHLHHHHHHHHLLLLLLEEEEEHHHHHLL
LLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL
LLLLLLL
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