Difference between revisions of "NONHSAT131002"

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sequence = <dnaseq>ATGAGCAGCGAGGCCGAGACCCAGCAGCCGCCCGCCGCTCCCCCACGCCGCCCCCGCCCTCAGCGCCGCCGACACCCACCCCAGCACTGCAGGCAGCGGCGCAGGAAGCGGTGGCCCGGGCGGCCTCACATCGGCGGCGCCTGCCGGCGGGGACAAGAAGGTCATCGCAACGAAGGTTTTGGGAACAGTAAAATGGTTCAGTGTAAGGAACGGATATGGTTTCATCAACAGGAATGACACCAAGGAAGATGTATTTGTACACCAGACTGCCAGAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGTAGGAGATGGAGAGACTGTGGAGTTTGATGTTGTTGAAGGAGAAAAGGGTGCGGAGGCAGCAAATGTTACAGGGCCTGGTGGTGTTCCAGTTCAAGGCAGTACATATGCAGCAGACCGTAACCATTATAGACGCTATCCACGTCGTAGGGTCCTCCACGCAATTACCAGCAAAATTACCAGAATAGTGAGAGTGGGGAAAAGAACGAGGGATCGGAGAGTGCTCCCGCAGGCCAAGCCCAACAACGCCGGCCCTACCGCAGGCGAAGGTTCCCACCTTACTACATGCGGAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCTGTGCAGGGTGAAGTGATGGAGGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCAGTGAGGCAGAATACGTATCGGGGATATAGACCACGATTCCGCAGGGGCCCTCCACGCCAAAGACAGCCTAGAGAGGACGGCAATGATGAAGATAAAGAAAATCAAGGAGATGAGACCCAAGGTCAGCAGCCACCTCAACGTCGGTACCGCCGCAACTTCAATTGCCGACGCAGACACCCAGAAAACCCTAAACCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTCCACTCCTGAGGCTGAGCGGGGCAGGACTGAGTAA</dnaseq>|
 
sequence = <dnaseq>ATGAGCAGCGAGGCCGAGACCCAGCAGCCGCCCGCCGCTCCCCCACGCCGCCCCCGCCCTCAGCGCCGCCGACACCCACCCCAGCACTGCAGGCAGCGGCGCAGGAAGCGGTGGCCCGGGCGGCCTCACATCGGCGGCGCCTGCCGGCGGGGACAAGAAGGTCATCGCAACGAAGGTTTTGGGAACAGTAAAATGGTTCAGTGTAAGGAACGGATATGGTTTCATCAACAGGAATGACACCAAGGAAGATGTATTTGTACACCAGACTGCCAGAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGTAGGAGATGGAGAGACTGTGGAGTTTGATGTTGTTGAAGGAGAAAAGGGTGCGGAGGCAGCAAATGTTACAGGGCCTGGTGGTGTTCCAGTTCAAGGCAGTACATATGCAGCAGACCGTAACCATTATAGACGCTATCCACGTCGTAGGGTCCTCCACGCAATTACCAGCAAAATTACCAGAATAGTGAGAGTGGGGAAAAGAACGAGGGATCGGAGAGTGCTCCCGCAGGCCAAGCCCAACAACGCCGGCCCTACCGCAGGCGAAGGTTCCCACCTTACTACATGCGGAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCTGTGCAGGGTGAAGTGATGGAGGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCAGTGAGGCAGAATACGTATCGGGGATATAGACCACGATTCCGCAGGGGCCCTCCACGCCAAAGACAGCCTAGAGAGGACGGCAATGATGAAGATAAAGAAAATCAAGGAGATGAGACCCAAGGTCAGCAGCCACCTCAACGTCGGTACCGCCGCAACTTCAATTGCCGACGCAGACACCCAGAAAACCCTAAACCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTCCACTCCTGAGGCTGAGCGGGGCAGGACTGAGTAA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG052138]][[Category:Transcripts]]

Latest revision as of 07:16, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT131002

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

975 nt

Genomic location

chr9-:35971341..35972315

Exon number

1

Exons

35971341..35972315

Genome context

Sequence
000001 ATGAGCAGCG AGGCCGAGAC CCAGCAGCCG CCCGCCGCTC CCCCACGCCG CCCCCGCCCT CAGCGCCGCC GACACCCACC 000080
000081 CCAGCACTGC AGGCAGCGGC GCAGGAAGCG GTGGCCCGGG CGGCCTCACA TCGGCGGCGC CTGCCGGCGG GGACAAGAAG 000160
000161 GTCATCGCAA CGAAGGTTTT GGGAACAGTA AAATGGTTCA GTGTAAGGAA CGGATATGGT TTCATCAACA GGAATGACAC 000240
000241 CAAGGAAGAT GTATTTGTAC ACCAGACTGC CAGAAAGAAG AATAACCCCA GGAAGTACCT TCGCAGTGTA GGAGATGGAG 000320
000321 AGACTGTGGA GTTTGATGTT GTTGAAGGAG AAAAGGGTGC GGAGGCAGCA AATGTTACAG GGCCTGGTGG TGTTCCAGTT 000400
000401 CAAGGCAGTA CATATGCAGC AGACCGTAAC CATTATAGAC GCTATCCACG TCGTAGGGTC CTCCACGCAA TTACCAGCAA 000480
000481 AATTACCAGA ATAGTGAGAG TGGGGAAAAG AACGAGGGAT CGGAGAGTGC TCCCGCAGGC CAAGCCCAAC AACGCCGGCC 000560
000561 CTACCGCAGG CGAAGGTTCC CACCTTACTA CATGCGGAGA CCCTATGGGC GTCGACCACA GTATTCCAAC CCTCCTGTGC 000640
000641 AGGGTGAAGT GATGGAGGGT GCTGACAACC AGGGTGCAGG AGAACAAGGT AGACCAGTGA GGCAGAATAC GTATCGGGGA 000720
000721 TATAGACCAC GATTCCGCAG GGGCCCTCCA CGCCAAAGAC AGCCTAGAGA GGACGGCAAT GATGAAGATA AAGAAAATCA 000800
000801 AGGAGATGAG ACCCAAGGTC AGCAGCCACC TCAACGTCGG TACCGCCGCA ACTTCAATTG CCGACGCAGA CACCCAGAAA 000880
000881 ACCCTAAACC ACAAGATGGC AAAGAGACAA AAGCAGCCGA TCCACCAGCT GAGAATTCGT CCACTCCTGA GGCTGAGCGG 000960
000961 GGCAGGACTG AGTAA
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Predicted Small Protein

Name NONHSAT131002_smProtein_314:493
Length 60
Molecular weight 6859.1621
Aromaticity 0.0508474576271
Instability index 50.3542372881
Isoelectric point 10.4198608398
Runs 8
Runs residual 0.00886331830197
Runs probability 0.0282304363187
Amino acid sequence MERLWSLMLLKEKRVRRQQMLQGLVVFQFKAVHMQQTVTIIDAIHVVGSSTQLPAKLPE
Secondary structure LLHHHHHHHHHHHHHHHHHHHHLLLLEEEEHHHHLLEEEEEEEEEEELLLLLLLLLLLL
PRMN -
PiMo -