Difference between revisions of "NONHSAT131515"

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sequence = <dnaseq>ACACAAATTCTGCAATGGCCCCAGAACACAAGGAATGTCAAATAGGATGATATAGTCGCTTTGCTAGGCATCCATACTGTGGAAAAGCTGGAGCAAACTCTGGAGTTATGTTGACAACATGACTTGAATGAAAAGGAAGTATTTCAAAAATAATATGACAACTGTGTGACTACAATGAGAAGATATACTTATGACATGGCTTAAAATATACAAGTTAAACATTACATGGGCGATCAAGATTTGTTGGATATCCTGTTTTTTCATAATCCAGAAAGCCTTTTTGTCTTTCCGTGTCAATGGAAGTGTCGTCCAGATCATTGTCTATATGGAAGCAGTTGCCAAGAAGCAGGAGAAGGAATCTTTATTTTTCACGGGAACAGAGGTGTTTACCATGATGATAAGCAACCAGCATTTAGAGCTGTTTATGAAGCACTGAGAAATTGTTCTTTTAAGATGACAATGTTTATTCATTAATAAAACCTTTAGAATTGGAACTACAAAAAACAGTGCATACATACCGTGGAAAAATTTACTAAATATTTATCAAACAATTAGCAAAAACATAAGAGATCGCTATGTCAGATCACCAAAGGAAAGGTGA</dnaseq>|
 
sequence = <dnaseq>ACACAAATTCTGCAATGGCCCCAGAACACAAGGAATGTCAAATAGGATGATATAGTCGCTTTGCTAGGCATCCATACTGTGGAAAAGCTGGAGCAAACTCTGGAGTTATGTTGACAACATGACTTGAATGAAAAGGAAGTATTTCAAAAATAATATGACAACTGTGTGACTACAATGAGAAGATATACTTATGACATGGCTTAAAATATACAAGTTAAACATTACATGGGCGATCAAGATTTGTTGGATATCCTGTTTTTTCATAATCCAGAAAGCCTTTTTGTCTTTCCGTGTCAATGGAAGTGTCGTCCAGATCATTGTCTATATGGAAGCAGTTGCCAAGAAGCAGGAGAAGGAATCTTTATTTTTCACGGGAACAGAGGTGTTTACCATGATGATAAGCAACCAGCATTTAGAGCTGTTTATGAAGCACTGAGAAATTGTTCTTTTAAGATGACAATGTTTATTCATTAATAAAACCTTTAGAATTGGAACTACAAAAAACAGTGCATACATACCGTGGAAAAATTTACTAAATATTTATCAAACAATTAGCAAAAACATAAGAGATCGCTATGTCAGATCACCAAAGGAAAGGTGA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG052404]][[Category:Transcripts]]

Latest revision as of 07:18, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT131515

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

601 nt

Genomic location

chr9-:66342521..66343121

Exon number

1

Exons

66342521..66343121

Genome context

Sequence
000001 ACACAAATTC TGCAATGGCC CCAGAACACA AGGAATGTCA AATAGGATGA TATAGTCGCT TTGCTAGGCA TCCATACTGT 000080
000081 GGAAAAGCTG GAGCAAACTC TGGAGTTATG TTGACAACAT GACTTGAATG AAAAGGAAGT ATTTCAAAAA TAATATGACA 000160
000161 ACTGTGTGAC TACAATGAGA AGATATACTT ATGACATGGC TTAAAATATA CAAGTTAAAC ATTACATGGG CGATCAAGAT 000240
000241 TTGTTGGATA TCCTGTTTTT TCATAATCCA GAAAGCCTTT TTGTCTTTCC GTGTCAATGG AAGTGTCGTC CAGATCATTG 000320
000321 TCTATATGGA AGCAGTTGCC AAGAAGCAGG AGAAGGAATC TTTATTTTTC ACGGGAACAG AGGTGTTTAC CATGATGATA 000400
000401 AGCAACCAGC ATTTAGAGCT GTTTATGAAG CACTGAGAAA TTGTTCTTTT AAGATGACAA TGTTTATTCA TTAATAAAAC 000480
000481 CTTTAGAATT GGAACTACAA AAAACAGTGC ATACATACCG TGGAAAAATT TACTAAATAT TTATCAAACA ATTAGCAAAA 000560
000561 ACATAAGAGA TCGCTATGTC AGATCACCAA AGGAAAGGTG A
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Predicted Small Protein

Name NONHSAT131515_smProtein_296:394
Length 33
Molecular weight 3980.5855
Aromaticity 0.09375
Instability index 129.9875
Isoelectric point 11.6170043945
Runs 7
Runs residual 0.0271045918367
Runs probability 0.0199989905872
Amino acid sequence MEVSSRSLSIWKQLPRSRRRNLYFSREQRCLP
Secondary structure LEELLLLHHHHHHLLLHHHHLLLLLLLLLLLL
PRMN -
PiMo -