Difference between revisions of "NONHSAT131953"

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sequence = <dnaseq>AAGGCCTCTCTCCTTCACAGTGACTCCGTTCACATGCTCCCGTCTTGTCATCAAGCCCTGTTCATCTCTCACCATCTCTCACCTGGACCATTGCCAGTTTCTGAGCTGCCTGCTCTTGAATACCAGCttcctgaaaatatcaccaaaacgatctggtcctcagacaaagcagagtctattgctcactgcagtaacagagagctccgtcttcagagtcttggtaacatttcgctgagaggacaacccaatcacactgtttaggagattttggattctgactaaggtgagtctgacaatgtggggtcttggcaaataatcatgatgaaatagtttaagatgagaagacacagcaaagtaaggattttgaggcaaagggttcaaacaatcttagagtataaactgctttttattgatgtaactctgaagatgttcctggagtaaaaaaaggaagttatttgcaaattttacctccagggtgagagcttctggaataagaaatttctgctgatgaagatcgtaaaCTGTGTGGGTGTAGCTGGTTTTGCCTGTCACCTCCATGCCTCCTATCTCAAACTCTTCCACTTCGTTAGCAACAGCAACAATAATAACAATAGTTACAATATGAGTAGCAGCAAAtatttagctctcattaaatgccaagcactgtcctaagcattttacaaatactgtctcattaaagttcgccataatcctatggtattggcactatttttgtccacattatacaaatgtaaacactgaagcagcttagagaggacaagttatttgaccaagtcacacagTACCTTCCCACTGTCAGAGTTCTATCAGAAATGAAAATTTGATAATTGCACACTCTTGCATAAACTTTTTCAAAGATTCCCTGTTGCCTAAAACATAAAAATCTTGATTTCTTCAAATGGTACACAGAACACTCCATGATCTGGCCTCAGTCCCACCTCTCCAGTCTTCTTTATTGTATAGGTTGCTCTACCCATTCCTGGACCACACATGATGCTGTTTCACGTCTTCATGAATCGTGCTCATTTGGAGTTTTTACTCCTGGTATCTACTCATCATCCATCTAATAAAACAGTAGCCTGGGGAAACAGTCTCTTCCCTCACTTTCAGCCTGTTTGCATTGTCCCCACTTAATGTGAACTGAGAGTAAGAAGGTGCTGGGATTGTTGCACTCTCTTACAGGAAGCAGGAGAATTAACCAACACTGAGGAGAAATGGGGAGATACAAACTATCTCATGAGGCTGTCCTGCAAGCCCTGGAGCAAGCTGAGCCCAAGCCTGTTCATTTATATCATCCAATACATTTGATTGTTTAAGGGAGAGTGATTTTTTTTTTAAGCATTTCCATCGGAAaaggtcttcattcacactgcagtctgttagaacatatttcttcaggctttcagactagaacaccctcacctttcaacattcagctcagatatcaccacctccatgaggtttttttgtttttgtttttgtttttgagacagtctcgctccatcacctaggctggagtgcagtggtgcaatcttggctcactggaacttctgcctccagagttcaagagattctcctgcctcagcctcctgagtagctgggattacaggcgcccaccatcacgcctgtataatttttgtatttGTGCCTGGAGCAAAAAtgtgtccagaattggtgggttgttggtctcgctgacctcaagaacggagccgtggaccctcgcggtaagtgttgtgtcccgagtttgttccttctgatgttcagatgtgtccagagtttcttccttctggggggttgctggtcttgctgacttcaggagtgaagctgcagaccttcgcagtgagtgggcggcgcatctggagttgttcgttccttccagtgggttcgtggtctcactggcctcaggagtgaaactgcagacctttgctgtgagtgttacagttcataaaggtggcacgtccagagttgttcgt</dnaseq>|
 
sequence = <dnaseq>AAGGCCTCTCTCCTTCACAGTGACTCCGTTCACATGCTCCCGTCTTGTCATCAAGCCCTGTTCATCTCTCACCATCTCTCACCTGGACCATTGCCAGTTTCTGAGCTGCCTGCTCTTGAATACCAGCttcctgaaaatatcaccaaaacgatctggtcctcagacaaagcagagtctattgctcactgcagtaacagagagctccgtcttcagagtcttggtaacatttcgctgagaggacaacccaatcacactgtttaggagattttggattctgactaaggtgagtctgacaatgtggggtcttggcaaataatcatgatgaaatagtttaagatgagaagacacagcaaagtaaggattttgaggcaaagggttcaaacaatcttagagtataaactgctttttattgatgtaactctgaagatgttcctggagtaaaaaaaggaagttatttgcaaattttacctccagggtgagagcttctggaataagaaatttctgctgatgaagatcgtaaaCTGTGTGGGTGTAGCTGGTTTTGCCTGTCACCTCCATGCCTCCTATCTCAAACTCTTCCACTTCGTTAGCAACAGCAACAATAATAACAATAGTTACAATATGAGTAGCAGCAAAtatttagctctcattaaatgccaagcactgtcctaagcattttacaaatactgtctcattaaagttcgccataatcctatggtattggcactatttttgtccacattatacaaatgtaaacactgaagcagcttagagaggacaagttatttgaccaagtcacacagTACCTTCCCACTGTCAGAGTTCTATCAGAAATGAAAATTTGATAATTGCACACTCTTGCATAAACTTTTTCAAAGATTCCCTGTTGCCTAAAACATAAAAATCTTGATTTCTTCAAATGGTACACAGAACACTCCATGATCTGGCCTCAGTCCCACCTCTCCAGTCTTCTTTATTGTATAGGTTGCTCTACCCATTCCTGGACCACACATGATGCTGTTTCACGTCTTCATGAATCGTGCTCATTTGGAGTTTTTACTCCTGGTATCTACTCATCATCCATCTAATAAAACAGTAGCCTGGGGAAACAGTCTCTTCCCTCACTTTCAGCCTGTTTGCATTGTCCCCACTTAATGTGAACTGAGAGTAAGAAGGTGCTGGGATTGTTGCACTCTCTTACAGGAAGCAGGAGAATTAACCAACACTGAGGAGAAATGGGGAGATACAAACTATCTCATGAGGCTGTCCTGCAAGCCCTGGAGCAAGCTGAGCCCAAGCCTGTTCATTTATATCATCCAATACATTTGATTGTTTAAGGGAGAGTGATTTTTTTTTTAAGCATTTCCATCGGAAaaggtcttcattcacactgcagtctgttagaacatatttcttcaggctttcagactagaacaccctcacctttcaacattcagctcagatatcaccacctccatgaggtttttttgtttttgtttttgtttttgagacagtctcgctccatcacctaggctggagtgcagtggtgcaatcttggctcactggaacttctgcctccagagttcaagagattctcctgcctcagcctcctgagtagctgggattacaggcgcccaccatcacgcctgtataatttttgtatttGTGCCTGGAGCAAAAAtgtgtccagaattggtgggttgttggtctcgctgacctcaagaacggagccgtggaccctcgcggtaagtgttgtgtcccgagtttgttccttctgatgttcagatgtgtccagagtttcttccttctggggggttgctggtcttgctgacttcaggagtgaagctgcagaccttcgcagtgagtgggcggcgcatctggagttgttcgttccttccagtgggttcgtggtctcactggcctcaggagtgaaactgcagacctttgctgtgagtgttacagttcataaaggtggcacgtccagagttgttcgt</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG052604]][[Category:Transcripts]]

Latest revision as of 07:20, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

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Regulation

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Expression

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Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

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You can also add sub-section(s) at will.

Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT131953

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1994 nt

Genomic location

chr9+:79131410..79143060

Exon number

2

Exons

79131410..79133074,79142732..79143060

Genome context

Sequence
000001 AAGGCCTCTC TCCTTCACAG TGACTCCGTT CACATGCTCC CGTCTTGTCA TCAAGCCCTG TTCATCTCTC ACCATCTCTC 000080
000081 ACCTGGACCA TTGCCAGTTT CTGAGCTGCC TGCTCTTGAA TACCAGCttc ctgaaaatat caccaaaacg atctggtcct 000160
000161 cagacaaagc agagtctatt gctcactgca gtaacagaga gctccgtctt cagagtcttg gtaacatttc gctgagagga 000240
000241 caacccaatc acactgttta ggagattttg gattctgact aaggtgagtc tgacaatgtg gggtcttggc aaataatcat 000320
000321 gatgaaatag tttaagatga gaagacacag caaagtaagg attttgaggc aaagggttca aacaatctta gagtataaac 000400
000401 tgctttttat tgatgtaact ctgaagatgt tcctggagta aaaaaaggaa gttatttgca aattttacct ccagggtgag 000480
000481 agcttctgga ataagaaatt tctgctgatg aagatcgtaa aCTGTGTGGG TGTAGCTGGT TTTGCCTGTC ACCTCCATGC 000560
000561 CTCCTATCTC AAACTCTTCC ACTTCGTTAG CAACAGCAAC AATAATAACA ATAGTTACAA TATGAGTAGC AGCAAAtatt 000640
000641 tagctctcat taaatgccaa gcactgtcct aagcatttta caaatactgt ctcattaaag ttcgccataa tcctatggta 000720
000721 ttggcactat ttttgtccac attatacaaa tgtaaacact gaagcagctt agagaggaca agttatttga ccaagtcaca 000800
000801 cagTACCTTC CCACTGTCAG AGTTCTATCA GAAATGAAAA TTTGATAATT GCACACTCTT GCATAAACTT TTTCAAAGAT 000880
000881 TCCCTGTTGC CTAAAACATA AAAATCTTGA TTTCTTCAAA TGGTACACAG AACACTCCAT GATCTGGCCT CAGTCCCACC 000960
000961 TCTCCAGTCT TCTTTATTGT ATAGGTTGCT CTACCCATTC CTGGACCACA CATGATGCTG TTTCACGTCT TCATGAATCG 001040
001041 TGCTCATTTG GAGTTTTTAC TCCTGGTATC TACTCATCAT CCATCTAATA AAACAGTAGC CTGGGGAAAC AGTCTCTTCC 001120
001121 CTCACTTTCA GCCTGTTTGC ATTGTCCCCA CTTAATGTGA ACTGAGAGTA AGAAGGTGCT GGGATTGTTG CACTCTCTTA 001200
001201 CAGGAAGCAG GAGAATTAAC CAACACTGAG GAGAAATGGG GAGATACAAA CTATCTCATG AGGCTGTCCT GCAAGCCCTG 001280
001281 GAGCAAGCTG AGCCCAAGCC TGTTCATTTA TATCATCCAA TACATTTGAT TGTTTAAGGG AGAGTGATTT TTTTTTTAAG 001360
001361 CATTTCCATC GGAAaaggtc ttcattcaca ctgcagtctg ttagaacata tttcttcagg ctttcagact agaacaccct 001440
001441 cacctttcaa cattcagctc agatatcacc acctccatga ggtttttttg tttttgtttt tgtttttgag acagtctcgc 001520
001521 tccatcacct aggctggagt gcagtggtgc aatcttggct cactggaact tctgcctcca gagttcaaga gattctcctg 001600
001601 cctcagcctc ctgagtagct gggattacag gcgcccacca tcacgcctgt ataatttttg tatttGTGCC TGGAGCAAAA 001680
001681 Atgtgtccag aattggtggg ttgttggtct cgctgacctc aagaacggag ccgtggaccc tcgcggtaag tgttgtgtcc 001760
001761 cgagtttgtt ccttctgatg ttcagatgtg tccagagttt cttccttctg gggggttgct ggtcttgctg acttcaggag 001840
001841 tgaagctgca gaccttcgca gtgagtgggc ggcgcatctg gagttgttcg ttccttccag tgggttcgtg gtctcactgg 001920
001921 cctcaggagt gaaactgcag acctttgctg tgagtgttac agttcataaa ggtggcacgt ccagagttgt tcgt
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Predicted Small Protein

Name NONHSAT131953_smProtein_938:1087
Length 50
Molecular weight 5431.0782
Aromaticity 0.122448979592
Instability index 44.2
Isoelectric point 6.36077880859
Runs 10
Runs residual 0.0420297848869
Runs probability 0.0449478890656
Amino acid sequence MIWPQSHLSSLLYCIGCSTHSWTTHDAVSRLHESCSFGVFTPGIYSSSI
Secondary structure LLLLLLLHHHHEEEELLLLLLLLHHHHHHHHHHLLLLLEELLLEEELLL
PRMN -
PiMo -