Difference between revisions of "NONHSAT133818"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| (One intermediate revision by one other user not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>CAAGAGTCTCGATCGTCCTCCAACCTTTCATCTGTCCCAGGATTAAGATTTCACCTGATGACACGCCCAGAAGTGCGGGAAGGACTGGCCAAGTGGAAGTCTACCACGCGATGCTCGTGGACTGACTGAGGAGTACCCAGCCCGGAGCGCGCTCAGCCTGTGGCCGGCCTCCTCACCAAGGGGTAGGCAGGTGCCCAGAATGCTGGAGGATGCCCGGTAAGGGCACCCGAGTCGCCAGCGGTACCTGTCTGAAGGCGCCCACCCATCCCCGGAAATTTCCTATGCACATACAAGCTTACTGTTGAAGTCCTCTCATCCAATGCACTCAGAACGGgactgtaagtccagctgctgtgtatcatcacctcagcccgattggtcctcggccacacttcacttcagcttctgataggtcctgggccaagctaagcagcatctatgaatcatttcacctcctgactggtcccgggccaagccgagtcacgcattcgccaagacagcccccagactaagcacattccttccccttccgtccataaaaacctggaccccagcctcatgatgggcactcccgttcgggaccccctctctgctggcagagagctttcttctttcaccttattaaactttcac</dnaseq>| | sequence = <dnaseq>CAAGAGTCTCGATCGTCCTCCAACCTTTCATCTGTCCCAGGATTAAGATTTCACCTGATGACACGCCCAGAAGTGCGGGAAGGACTGGCCAAGTGGAAGTCTACCACGCGATGCTCGTGGACTGACTGAGGAGTACCCAGCCCGGAGCGCGCTCAGCCTGTGGCCGGCCTCCTCACCAAGGGGTAGGCAGGTGCCCAGAATGCTGGAGGATGCCCGGTAAGGGCACCCGAGTCGCCAGCGGTACCTGTCTGAAGGCGCCCACCCATCCCCGGAAATTTCCTATGCACATACAAGCTTACTGTTGAAGTCCTCTCATCCAATGCACTCAGAACGGgactgtaagtccagctgctgtgtatcatcacctcagcccgattggtcctcggccacacttcacttcagcttctgataggtcctgggccaagctaagcagcatctatgaatcatttcacctcctgactggtcccgggccaagccgagtcacgcattcgccaagacagcccccagactaagcacattccttccccttccgtccataaaaacctggaccccagcctcatgatgggcactcccgttcgggaccccctctctgctggcagagagctttcttctttcaccttattaaactttcac</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:NONHSAG053108]][[Category:Transcripts]] |
Latest revision as of 02:32, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT133818 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
antisense |
| Length |
633 nt |
| Genomic location |
chr9-:108316326..108320746 |
| Exon number |
3 |
| Exons |
108316326..108316624,108319395..108319456,108320475..108320746 |
| Genome context |
|
| Sequence |
000001 CAAGAGTCTC GATCGTCCTC CAACCTTTCA TCTGTCCCAG GATTAAGATT TCACCTGATG ACACGCCCAG AAGTGCGGGA 000080
000081 AGGACTGGCC AAGTGGAAGT CTACCACGCG ATGCTCGTGG ACTGACTGAG GAGTACCCAG CCCGGAGCGC GCTCAGCCTG 000160 000161 TGGCCGGCCT CCTCACCAAG GGGTAGGCAG GTGCCCAGAA TGCTGGAGGA TGCCCGGTAA GGGCACCCGA GTCGCCAGCG 000240 000241 GTACCTGTCT GAAGGCGCCC ACCCATCCCC GGAAATTTCC TATGCACATA CAAGCTTACT GTTGAAGTCC TCTCATCCAA 000320 000321 TGCACTCAGA ACGGgactgt aagtccagct gctgtgtatc atcacctcag cccgattggt cctcggccac acttcacttc 000400 000401 agcttctgat aggtcctggg ccaagctaag cagcatctat gaatcatttc acctcctgac tggtcccggg ccaagccgag 000480 000481 tcacgcattc gccaagacag cccccagact aagcacattc cttccccttc cgtccataaa aacctggacc ccagcctcat 000560 000561 gatgggcact cccgttcggg accccctctc tgctggcaga gagctttctt ctttcacctt attaaacttt cac |
Predicted Small Protein
| Name | NONHSAT133818_smProtein_209:304 |
| Length | 32 |
| Molecular weight | 3385.0198 |
| Aromaticity | 0.0645161290323 |
| Instability index | 55.6548387097 |
| Isoelectric point | 10.0602416992 |
| Runs | 6 |
| Runs residual | 0.00772849462366 |
| Runs probability | 0.0215656833305 |
| Amino acid sequence | MPGKGTRVASGTCLKAPTHPRKFPMHIQAYC |
| Secondary structure | LLLLLEEELLLLLLLLLLLLLLLLHHHEELL |
| PRMN | - |
| PiMo | - |
