Difference between revisions of "NONHSAT135152"

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sequence = <dnaseq>AGAGTTTGTTAAGGACCGTGTAAGAGGACACCACGCTGGCTTTTCAGTGGGCGCGTCTCTCCTGGGGGCATCACCAGACAACCCCAGGCGGAAGTGGCGGTGGCCCATCCTCATGCAAACTGCAGTGTAAGAACTGGGGCCCGGGACTCCTCGCAAATGTGGGACACTGACATTCTGTGATGCTGTCCCAATGCCCTTTCAAAGCGCTCAGCCCCCAAATTCCCAACCAACAGCCATTTCAGGGAGGGGCTACCCAGGACCAGGCTTTTGATGAACCACGACTGTTCGGGGTGCCGTCTTGGGAGAGCCACGTCAGTCCCTCTGAGATTCCAAACGGCCGACAGCGGACACCTCGGGACCACATCCAAGCCTCGGGGACCTGTCAAGACGCCATCGACGGTCCTGGACCAAATCCCGCCCGGGAAGGGAAGGGTCGCGACCGGACCCTGGAGACCCACGGCTGCCTGGCGATCTGAGCCCACCCCGGCGCTGCCGTCCCGCCCCCACTTCCGATCGGTCGAAGGTCACGTGCCCTGACCCCGCCCCGCAGACGCGACTCCTCCAGCTGCGAGCGTCCCGGCTTTCCCTTCCGCCGGAAGTAGGGCGACTTTCCTTTTCCGGCTACGGGTCCCCAAGCGGAGCGGGAGGCCGGACCGGGGAGCCGAgcggcggcgtcggcggcgtcggcggcggcggcgacggcggcgggggcggTAATGGCGGAGCTGGTGCAGGGGCAGAGCGCTCCTGTGGGGATGAAGGCCGAGGGCTTCGTGGATGCCCTGCACCGGGTCCGGCAGAAAGCCACAGGAGTCATTGTATTAGAAGAAGGTCTTCACTCGGGCGCTTGAAGATATGGTCTTTACATCTCTTTCCAGTATTCCAGGGGAGGGAACCCTACCTGTTTCCCTGATAACTGACTTTTCATGTTATATATTGATGCTCCTATAGACATTATATTGGATCCCAGAACTTTCCAAACCTGTGGTTCCACCTAAAATTTTATCTGATGAATTGTTACTTTACTGCCTAGCTGCCAACCAGTACAGTAGTGAGTATCCATCTTACTTAGACTTCAGATCCACCCATGGCTGTAATGGATGAACATGCCACCCAGCTCCCCTTCCACCACTCTGCTTGCTGGCGTGTTACAGTGCTCTCCTCTACAGTACAGGGTCCTGAACCTTGTTTCTCACTGGCTACTAATATGTAATGGCTTTCGCTCTGTGCTGATGTGTGACAGTCACCTTGTTGGCCTTCTATGTCCGGGAAGAATTATAGTCACTGCCCTAAAGGGCTCAGATCCTCAGTTTGCAGAAGGCCTGTAGTTGAACATAAAGTGAATTTTGAACCATTGAGAAGACATTCCGCTTCTCTTGAGCCAGTGGTTGAACTCATATTCTTGGACAACCTGCTCCAGAGGGAGACCCTCTGGTAAATGCTGACCTAATGTGGATTGTTGAAGCAGTGGTGTTTACTACTAGCAGTGAAAACTTCATTGGAATTGTTCTCAGCTCTGAAATGCACCATTGACTGGAGCAGTAATAAGCCCAATGGAGACAGGGCTGTAAGTGTGTTCCTTCTGAATGTTAACAGCTGGAGGTCCATACTATCTCCAAGGATTTGATGGCCTTTAAAAACTAAAGAAAAACCAGGTTGGTGGGTAATTTTAGGTTTATTGTATATAGATTTGCATTGGGCAAGAACGGAATGTTAGAAATCTGTAATACTGTATGCTGATGGTAAACTTACTGTAAGGATCTCATTTGGGTATCTGGAAGGTGATAGTTCTGTTTCTTTGTTATATACACAGCATGTTACAGAGATGTGATTTTTCTCCCCATTAAACAGAACTAAAAGACAGTATATTTATTTAAACGCAAAGCTTTTTCCCCTTTTATGTCTCCTCATAAACTCCAGAGACAGTCTGGAAGGCCCTCTTAAATTTGTCAAAGAGcagtaaagtgtctcacgctcagtttttctagcagatcgtaatactctcagttgaccctgctgggatttgaacctgcagtttctattaagtttggtgtgtgaagtccaacaccttatcaactaggctttccctctgacATCTTGAAGCCTCCGTGTATATCCTTTGGACTCTGCAGCAAAGTGCATCAGTTGTTAGTTTACTCTGAGCATGGTATTCTTAGATTGAAAAGAAGTCTCTGAAGATGTCAAATAAAATGTAAACATTTTCTCCA</dnaseq>|
 
sequence = <dnaseq>AGAGTTTGTTAAGGACCGTGTAAGAGGACACCACGCTGGCTTTTCAGTGGGCGCGTCTCTCCTGGGGGCATCACCAGACAACCCCAGGCGGAAGTGGCGGTGGCCCATCCTCATGCAAACTGCAGTGTAAGAACTGGGGCCCGGGACTCCTCGCAAATGTGGGACACTGACATTCTGTGATGCTGTCCCAATGCCCTTTCAAAGCGCTCAGCCCCCAAATTCCCAACCAACAGCCATTTCAGGGAGGGGCTACCCAGGACCAGGCTTTTGATGAACCACGACTGTTCGGGGTGCCGTCTTGGGAGAGCCACGTCAGTCCCTCTGAGATTCCAAACGGCCGACAGCGGACACCTCGGGACCACATCCAAGCCTCGGGGACCTGTCAAGACGCCATCGACGGTCCTGGACCAAATCCCGCCCGGGAAGGGAAGGGTCGCGACCGGACCCTGGAGACCCACGGCTGCCTGGCGATCTGAGCCCACCCCGGCGCTGCCGTCCCGCCCCCACTTCCGATCGGTCGAAGGTCACGTGCCCTGACCCCGCCCCGCAGACGCGACTCCTCCAGCTGCGAGCGTCCCGGCTTTCCCTTCCGCCGGAAGTAGGGCGACTTTCCTTTTCCGGCTACGGGTCCCCAAGCGGAGCGGGAGGCCGGACCGGGGAGCCGAgcggcggcgtcggcggcgtcggcggcggcggcgacggcggcgggggcggTAATGGCGGAGCTGGTGCAGGGGCAGAGCGCTCCTGTGGGGATGAAGGCCGAGGGCTTCGTGGATGCCCTGCACCGGGTCCGGCAGAAAGCCACAGGAGTCATTGTATTAGAAGAAGGTCTTCACTCGGGCGCTTGAAGATATGGTCTTTACATCTCTTTCCAGTATTCCAGGGGAGGGAACCCTACCTGTTTCCCTGATAACTGACTTTTCATGTTATATATTGATGCTCCTATAGACATTATATTGGATCCCAGAACTTTCCAAACCTGTGGTTCCACCTAAAATTTTATCTGATGAATTGTTACTTTACTGCCTAGCTGCCAACCAGTACAGTAGTGAGTATCCATCTTACTTAGACTTCAGATCCACCCATGGCTGTAATGGATGAACATGCCACCCAGCTCCCCTTCCACCACTCTGCTTGCTGGCGTGTTACAGTGCTCTCCTCTACAGTACAGGGTCCTGAACCTTGTTTCTCACTGGCTACTAATATGTAATGGCTTTCGCTCTGTGCTGATGTGTGACAGTCACCTTGTTGGCCTTCTATGTCCGGGAAGAATTATAGTCACTGCCCTAAAGGGCTCAGATCCTCAGTTTGCAGAAGGCCTGTAGTTGAACATAAAGTGAATTTTGAACCATTGAGAAGACATTCCGCTTCTCTTGAGCCAGTGGTTGAACTCATATTCTTGGACAACCTGCTCCAGAGGGAGACCCTCTGGTAAATGCTGACCTAATGTGGATTGTTGAAGCAGTGGTGTTTACTACTAGCAGTGAAAACTTCATTGGAATTGTTCTCAGCTCTGAAATGCACCATTGACTGGAGCAGTAATAAGCCCAATGGAGACAGGGCTGTAAGTGTGTTCCTTCTGAATGTTAACAGCTGGAGGTCCATACTATCTCCAAGGATTTGATGGCCTTTAAAAACTAAAGAAAAACCAGGTTGGTGGGTAATTTTAGGTTTATTGTATATAGATTTGCATTGGGCAAGAACGGAATGTTAGAAATCTGTAATACTGTATGCTGATGGTAAACTTACTGTAAGGATCTCATTTGGGTATCTGGAAGGTGATAGTTCTGTTTCTTTGTTATATACACAGCATGTTACAGAGATGTGATTTTTCTCCCCATTAAACAGAACTAAAAGACAGTATATTTATTTAAACGCAAAGCTTTTTCCCCTTTTATGTCTCCTCATAAACTCCAGAGACAGTCTGGAAGGCCCTCTTAAATTTGTCAAAGAGcagtaaagtgtctcacgctcagtttttctagcagatcgtaatactctcagttgaccctgctgggatttgaacctgcagtttctattaagtttggtgtgtgaagtccaacaccttatcaactaggctttccctctgacATCTTGAAGCCTCCGTGTATATCCTTTGGACTCTGCAGCAAAGTGCATCAGTTGTTAGTTTACTCTGAGCATGGTATTCTTAGATTGAAAAGAAGTCTCTGAAGATGTCAAATAAAATGTAAACATTTTCTCCA</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG053617]][[Category:Transcripts]]

Latest revision as of 02:36, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT135152

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2228 nt

Genomic location

chr9+:133454352..133457473

Exon number

2

Exons

133454352..133455151,133456046..133457473

Genome context

Sequence
000001 AGAGTTTGTT AAGGACCGTG TAAGAGGACA CCACGCTGGC TTTTCAGTGG GCGCGTCTCT CCTGGGGGCA TCACCAGACA 000080
000081 ACCCCAGGCG GAAGTGGCGG TGGCCCATCC TCATGCAAAC TGCAGTGTAA GAACTGGGGC CCGGGACTCC TCGCAAATGT 000160
000161 GGGACACTGA CATTCTGTGA TGCTGTCCCA ATGCCCTTTC AAAGCGCTCA GCCCCCAAAT TCCCAACCAA CAGCCATTTC 000240
000241 AGGGAGGGGC TACCCAGGAC CAGGCTTTTG ATGAACCACG ACTGTTCGGG GTGCCGTCTT GGGAGAGCCA CGTCAGTCCC 000320
000321 TCTGAGATTC CAAACGGCCG ACAGCGGACA CCTCGGGACC ACATCCAAGC CTCGGGGACC TGTCAAGACG CCATCGACGG 000400
000401 TCCTGGACCA AATCCCGCCC GGGAAGGGAA GGGTCGCGAC CGGACCCTGG AGACCCACGG CTGCCTGGCG ATCTGAGCCC 000480
000481 ACCCCGGCGC TGCCGTCCCG CCCCCACTTC CGATCGGTCG AAGGTCACGT GCCCTGACCC CGCCCCGCAG ACGCGACTCC 000560
000561 TCCAGCTGCG AGCGTCCCGG CTTTCCCTTC CGCCGGAAGT AGGGCGACTT TCCTTTTCCG GCTACGGGTC CCCAAGCGGA 000640
000641 GCGGGAGGCC GGACCGGGGA GCCGAgcggc ggcgtcggcg gcgtcggcgg cggcggcgac ggcggcgggg gcggTAATGG 000720
000721 CGGAGCTGGT GCAGGGGCAG AGCGCTCCTG TGGGGATGAA GGCCGAGGGC TTCGTGGATG CCCTGCACCG GGTCCGGCAG 000800
000801 AAAGCCACAG GAGTCATTGT ATTAGAAGAA GGTCTTCACT CGGGCGCTTG AAGATATGGT CTTTACATCT CTTTCCAGTA 000880
000881 TTCCAGGGGA GGGAACCCTA CCTGTTTCCC TGATAACTGA CTTTTCATGT TATATATTGA TGCTCCTATA GACATTATAT 000960
000961 TGGATCCCAG AACTTTCCAA ACCTGTGGTT CCACCTAAAA TTTTATCTGA TGAATTGTTA CTTTACTGCC TAGCTGCCAA 001040
001041 CCAGTACAGT AGTGAGTATC CATCTTACTT AGACTTCAGA TCCACCCATG GCTGTAATGG ATGAACATGC CACCCAGCTC 001120
001121 CCCTTCCACC ACTCTGCTTG CTGGCGTGTT ACAGTGCTCT CCTCTACAGT ACAGGGTCCT GAACCTTGTT TCTCACTGGC 001200
001201 TACTAATATG TAATGGCTTT CGCTCTGTGC TGATGTGTGA CAGTCACCTT GTTGGCCTTC TATGTCCGGG AAGAATTATA 001280
001281 GTCACTGCCC TAAAGGGCTC AGATCCTCAG TTTGCAGAAG GCCTGTAGTT GAACATAAAG TGAATTTTGA ACCATTGAGA 001360
001361 AGACATTCCG CTTCTCTTGA GCCAGTGGTT GAACTCATAT TCTTGGACAA CCTGCTCCAG AGGGAGACCC TCTGGTAAAT 001440
001441 GCTGACCTAA TGTGGATTGT TGAAGCAGTG GTGTTTACTA CTAGCAGTGA AAACTTCATT GGAATTGTTC TCAGCTCTGA 001520
001521 AATGCACCAT TGACTGGAGC AGTAATAAGC CCAATGGAGA CAGGGCTGTA AGTGTGTTCC TTCTGAATGT TAACAGCTGG 001600
001601 AGGTCCATAC TATCTCCAAG GATTTGATGG CCTTTAAAAA CTAAAGAAAA ACCAGGTTGG TGGGTAATTT TAGGTTTATT 001680
001681 GTATATAGAT TTGCATTGGG CAAGAACGGA ATGTTAGAAA TCTGTAATAC TGTATGCTGA TGGTAAACTT ACTGTAAGGA 001760
001761 TCTCATTTGG GTATCTGGAA GGTGATAGTT CTGTTTCTTT GTTATATACA CAGCATGTTA CAGAGATGTG ATTTTTCTCC 001840
001841 CCATTAAACA GAACTAAAAG ACAGTATATT TATTTAAACG CAAAGCTTTT TCCCCTTTTA TGTCTCCTCA TAAACTCCAG 001920
001921 AGACAGTCTG GAAGGCCCTC TTAAATTTGT CAAAGAGcag taaagtgtct cacgctcagt ttttctagca gatcgtaata 002000
002001 ctctcagttg accctgctgg gatttgaacc tgcagtttct attaagtttg gtgtgtgaag tccaacacct tatcaactag 002080
002081 gctttccctc tgacATCTTG AAGCCTCCGT GTATATCCTT TGGACTCTGC AGCAAAGTGC ATCAGTTGTT AGTTTACTCT 002160
002161 GAGCATGGTA TTCTTAGATT GAAAAGAAGT CTCTGAAGAT GTCAAATAAA ATGTAAACAT TTTCTCCA
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Predicted Small Protein

Name NONHSAT135152_smProtein_179:475
Length 99
Molecular weight 10632.641
Aromaticity 0.0510204081633
Instability index 49.35
Isoelectric point 5.82769775391
Runs 11
Runs residual 0.0267976349418
Runs probability 0.01677345795
Amino acid sequence MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD
HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLEELLLLLLLLLLLLLLLH
HHHLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLEELL
PRMN -
PiMo -