Difference between revisions of "NONHSAT135716"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TTGGGGAAGAGAGCCAGGAGACTCTGATGATGAATTCTGACCAGAAGGCAGTGAAATTCCTGGCAAATTTTTACATCAATGGAGGCAAACACTGGACCCATGGTCACCTGAGGCAGACACAACCAGAGCCCACCCAGCCCAAGGCATCTGTGCTGTTGTTGGGCCCGGAGCCGGGGATGGCCTGGGATGAGACACAGCCCCCAAAGATGAAGGAGATCCCAGTTGGCCTCAGGTTACAGACGGGCACCCCCCAGGAGTCCCTGCCCACCTACACCCAGACCCTGAGGGAACTATAGGGCGGTGGCCGCAGGGCATGGCAGACTTTGTGGTTCCAGAGCGAAAGCCCCTTCACGCAGAAAGCTGACTTCGACCAAGAGCAAAAGTGGCCCTCGCCAGCCCACTACCAGCTGCTCAGCCGGCCCGCCTTCCCCGCCTTCAGCTTCAGAGGCTGCCACTCCGCTTCCAAGACACCTGAAGGCCACACCCACCTAGGGCTGCCTGGGGCTAGGGGGCTGGGCCTCAGGGTGCAGCCCCAGTCCCTGCTTCAGGCCTCTTTGCAGGCACCTGGCAAGAGATGCCCTGGCCCCAACACCTACAATATCCTTCCTGGGAGCCGCCTGCAGAGCCCCCGCTCGCCGGCCTTCTCGATGAGCCGCTCCCCTGCGTTCACCTCCTGGCTCAGCACCTCCCGAACCCCTGGCCCAGCCGCCTACCACGTGGAGGACTGCAACTCACGCTTCCCTTCGGCGCCTGGCGTGGTCATCCAGGGTGTACGCAGACCCAAGCGCCACGACACAGGCCCCTTCTGCACGCTCTAGAGCCAGCTGGGCACAACCTGCTTGGCCCGGCCACCGAGTGGAACCATGGCCTCCCCCGGGGCTTTCCCAGGCCTCCCCTGGGACTTGGGGCCCCAGCCTGGCCTTCTGACCCTCTGGGCACCCCGATGCACCCTTCTGGCTGGCCAACCCTTCTATGGGCTGTGGACAAGGCTGGCCCAGCCTGGATCCCCCATCTGCCCATCTCCCCGCTACACTGAGATGCTGTTGGTTTTCCCGA</dnaseq>| | sequence = <dnaseq>TTGGGGAAGAGAGCCAGGAGACTCTGATGATGAATTCTGACCAGAAGGCAGTGAAATTCCTGGCAAATTTTTACATCAATGGAGGCAAACACTGGACCCATGGTCACCTGAGGCAGACACAACCAGAGCCCACCCAGCCCAAGGCATCTGTGCTGTTGTTGGGCCCGGAGCCGGGGATGGCCTGGGATGAGACACAGCCCCCAAAGATGAAGGAGATCCCAGTTGGCCTCAGGTTACAGACGGGCACCCCCCAGGAGTCCCTGCCCACCTACACCCAGACCCTGAGGGAACTATAGGGCGGTGGCCGCAGGGCATGGCAGACTTTGTGGTTCCAGAGCGAAAGCCCCTTCACGCAGAAAGCTGACTTCGACCAAGAGCAAAAGTGGCCCTCGCCAGCCCACTACCAGCTGCTCAGCCGGCCCGCCTTCCCCGCCTTCAGCTTCAGAGGCTGCCACTCCGCTTCCAAGACACCTGAAGGCCACACCCACCTAGGGCTGCCTGGGGCTAGGGGGCTGGGCCTCAGGGTGCAGCCCCAGTCCCTGCTTCAGGCCTCTTTGCAGGCACCTGGCAAGAGATGCCCTGGCCCCAACACCTACAATATCCTTCCTGGGAGCCGCCTGCAGAGCCCCCGCTCGCCGGCCTTCTCGATGAGCCGCTCCCCTGCGTTCACCTCCTGGCTCAGCACCTCCCGAACCCCTGGCCCAGCCGCCTACCACGTGGAGGACTGCAACTCACGCTTCCCTTCGGCGCCTGGCGTGGTCATCCAGGGTGTACGCAGACCCAAGCGCCACGACACAGGCCCCTTCTGCACGCTCTAGAGCCAGCTGGGCACAACCTGCTTGGCCCGGCCACCGAGTGGAACCATGGCCTCCCCCGGGGCTTTCCCAGGCCTCCCCTGGGACTTGGGGCCCCAGCCTGGCCTTCTGACCCTCTGGGCACCCCGATGCACCCTTCTGGCTGGCCAACCCTTCTATGGGCTGTGGACAAGGCTGGCCCAGCCTGGATCCCCCATCTGCCCATCTCCCCGCTACACTGAGATGCTGTTGGTTTTCCCGA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG053861]][[Category:Transcripts]] |
Latest revision as of 02:38, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT135716 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
1056 nt |
| Genomic location |
chr9+:140145713..140147935 |
| Exon number |
5 |
| Exons |
140145713..140145848,140146190..140146347,140146889..140146977,140147114..140147417,140147567..140147935 |
| Genome context |
|
| Sequence |
000001 TTGGGGAAGA GAGCCAGGAG ACTCTGATGA TGAATTCTGA CCAGAAGGCA GTGAAATTCC TGGCAAATTT TTACATCAAT 000080
000081 GGAGGCAAAC ACTGGACCCA TGGTCACCTG AGGCAGACAC AACCAGAGCC CACCCAGCCC AAGGCATCTG TGCTGTTGTT 000160 000161 GGGCCCGGAG CCGGGGATGG CCTGGGATGA GACACAGCCC CCAAAGATGA AGGAGATCCC AGTTGGCCTC AGGTTACAGA 000240 000241 CGGGCACCCC CCAGGAGTCC CTGCCCACCT ACACCCAGAC CCTGAGGGAA CTATAGGGCG GTGGCCGCAG GGCATGGCAG 000320 000321 ACTTTGTGGT TCCAGAGCGA AAGCCCCTTC ACGCAGAAAG CTGACTTCGA CCAAGAGCAA AAGTGGCCCT CGCCAGCCCA 000400 000401 CTACCAGCTG CTCAGCCGGC CCGCCTTCCC CGCCTTCAGC TTCAGAGGCT GCCACTCCGC TTCCAAGACA CCTGAAGGCC 000480 000481 ACACCCACCT AGGGCTGCCT GGGGCTAGGG GGCTGGGCCT CAGGGTGCAG CCCCAGTCCC TGCTTCAGGC CTCTTTGCAG 000560 000561 GCACCTGGCA AGAGATGCCC TGGCCCCAAC ACCTACAATA TCCTTCCTGG GAGCCGCCTG CAGAGCCCCC GCTCGCCGGC 000640 000641 CTTCTCGATG AGCCGCTCCC CTGCGTTCAC CTCCTGGCTC AGCACCTCCC GAACCCCTGG CCCAGCCGCC TACCACGTGG 000720 000721 AGGACTGCAA CTCACGCTTC CCTTCGGCGC CTGGCGTGGT CATCCAGGGT GTACGCAGAC CCAAGCGCCA CGACACAGGC 000800 000801 CCCTTCTGCA CGCTCTAGAG CCAGCTGGGC ACAACCTGCT TGGCCCGGCC ACCGAGTGGA ACCATGGCCT CCCCCGGGGC 000880 000881 TTTCCCAGGC CTCCCCTGGG ACTTGGGGCC CCAGCCTGGC CTTCTGACCC TCTGGGCACC CCGATGCACC CTTCTGGCTG 000960 000961 GCCAACCCTT CTATGGGCTG TGGACAAGGC TGGCCCAGCC TGGATCCCCC ATCTGCCCAT CTCCCCGCTA CACTGAGATG 001040 001041 CTGTTGGTTT TCCCGA |
Predicted Small Protein
| Name | NONHSAT135716_smProtein_26:295 |
| Length | 90 |
| Molecular weight | 10038.396 |
| Aromaticity | 0.0674157303371 |
| Instability index | 46.4956179775 |
| Isoelectric point | 8.09515380859 |
| Runs | 9 |
| Runs residual | 0.0420797532496 |
| Runs probability | 0.0432491314844 |
| Amino acid sequence | MMNSDQKAVKFLANFYINGGKHWTHGHLRQTQPEPTQPKASVLLLGPEPGMAWDETQPPK MKEIPVGLRLQTGTPQESLPTYTQTLREL |
| Secondary structure | LLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLLLLLLLLLLLL LEEEEEEEEELLLLLLLLLLHHHHHHHHL |
| PRMN | - |
| PiMo | - |
