Difference between revisions of "NONHSAT136413"

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sequence = <dnaseq>ATAATTCTCAGGTGTACTGTTAACATTTTAATTTAAAAGTATTTCTCTTAGCAGTTTTTGTTTTGTAGACAGTTCCCATAAAAATATTTTATCAGAATTGCAGAACTGTAGTAACAGTTCAGTCAACTTTGTTTTTTTCCTGGAGTCACCAACCAGCTTTGGGAGACACAGCCGCCACTCCCCCAGTCTACTTCTTTAAAAAGCATTTAACAGatggagtttcactcttgttgcccaggctggagtgcaatagctcgatctcggctcactgcaacctcgcctccctggttcaagcaattctcctgcctcagcgattacaggaatgcaccaccacgcccagctaattttgtagagatggggtttctccatgttggtcaggctggtctcaaactcctgacctcaggtgatccgcccacctcggccttgcaaaatgctgggattacaggcatgagccaccatgcccagccATGTTTGGGGCTTTATTTTATAAGTTAGAACTTTGAAGAGGAAATGGTGCTATATGTTTATTGTTATTACTTTGTGTAACTTTGATGTAATGTTTATAAGCTATGAGAATCAGTTATAAAAGTATTAGCCATTTGTTGTAAATGCCAATAAAATATTCACCAGGGGCAAGAATGTACATTTTCTTTTTAGAAAACCAAATGTACTTTAGACATGAATGCAACTATTTAAAGAATAGCTTCATTTATGTTATTCCTTACATGTCATAAGATTCTTACTTAAACTTGGTCTTCTTTCAAGTTGTTTGTATGAAGATGCTGTACCCACTTGAACAGTCCTCAG</dnaseq>|
 
sequence = <dnaseq>ATAATTCTCAGGTGTACTGTTAACATTTTAATTTAAAAGTATTTCTCTTAGCAGTTTTTGTTTTGTAGACAGTTCCCATAAAAATATTTTATCAGAATTGCAGAACTGTAGTAACAGTTCAGTCAACTTTGTTTTTTTCCTGGAGTCACCAACCAGCTTTGGGAGACACAGCCGCCACTCCCCCAGTCTACTTCTTTAAAAAGCATTTAACAGatggagtttcactcttgttgcccaggctggagtgcaatagctcgatctcggctcactgcaacctcgcctccctggttcaagcaattctcctgcctcagcgattacaggaatgcaccaccacgcccagctaattttgtagagatggggtttctccatgttggtcaggctggtctcaaactcctgacctcaggtgatccgcccacctcggccttgcaaaatgctgggattacaggcatgagccaccatgcccagccATGTTTGGGGCTTTATTTTATAAGTTAGAACTTTGAAGAGGAAATGGTGCTATATGTTTATTGTTATTACTTTGTGTAACTTTGATGTAATGTTTATAAGCTATGAGAATCAGTTATAAAAGTATTAGCCATTTGTTGTAAATGCCAATAAAATATTCACCAGGGGCAAGAATGTACATTTTCTTTTTAGAAAACCAAATGTACTTTAGACATGAATGCAACTATTTAAAGAATAGCTTCATTTATGTTATTCCTTACATGTCATAAGATTCTTACTTAAACTTGGTCTTCTTTCAAGTTGTTTGTATGAAGATGCTGTACCCACTTGAACAGTCCTCAG</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG054111]][[Category:Transcripts]]

Latest revision as of 02:40, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT136413

Source

NONCODE4.0

Same with

,

Classification

sense

Length

807 nt

Genomic location

chrX-:18257505..18259345

Exon number

2

Exons

18257505..18258098,18259133..18259345

Genome context

Sequence
000001 ATAATTCTCA GGTGTACTGT TAACATTTTA ATTTAAAAGT ATTTCTCTTA GCAGTTTTTG TTTTGTAGAC AGTTCCCATA 000080
000081 AAAATATTTT ATCAGAATTG CAGAACTGTA GTAACAGTTC AGTCAACTTT GTTTTTTTCC TGGAGTCACC AACCAGCTTT 000160
000161 GGGAGACACA GCCGCCACTC CCCCAGTCTA CTTCTTTAAA AAGCATTTAA CAGatggagt ttcactcttg ttgcccaggc 000240
000241 tggagtgcaa tagctcgatc tcggctcact gcaacctcgc ctccctggtt caagcaattc tcctgcctca gcgattacag 000320
000321 gaatgcacca ccacgcccag ctaattttgt agagatgggg tttctccatg ttggtcaggc tggtctcaaa ctcctgacct 000400
000401 caggtgatcc gcccacctcg gccttgcaaa atgctgggat tacaggcatg agccaccatg cccagccATG TTTGGGGCTT 000480
000481 TATTTTATAA GTTAGAACTT TGAAGAGGAA ATGGTGCTAT ATGTTTATTG TTATTACTTT GTGTAACTTT GATGTAATGT 000560
000561 TTATAAGCTA TGAGAATCAG TTATAAAAGT ATTAGCCATT TGTTGTAAAT GCCAATAAAA TATTCACCAG GGGCAAGAAT 000640
000641 GTACATTTTC TTTTTAGAAA ACCAAATGTA CTTTAGACAT GAATGCAACT ATTTAAAGAA TAGCTTCATT TATGTTATTC 000720
000721 CTTACATGTC ATAAGATTCT TACTTAAACT TGGTCTTCTT TCAAGTTGTT TGTATGAAGA TGCTGTACCC ACTTGAACAG 000800
000801 TCCTCAG
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Predicted Small Protein

Name NONHSAT136413_smProtein_608:733
Length 42
Molecular weight 5106.9802
Aromaticity 0.243902439024
Instability index 70.8365853659
Isoelectric point 8.88958740234
Runs 6
Runs residual 0.0296274128385
Runs probability 0.0380821998468
Amino acid sequence MPIKYSPGARMYIFFLENQMYFRHECNYLKNSFIYVIPYMS
Secondary structure LLLLLLLLLEEEHHHHHHHHHHHHHHHHHHLLEEEEEELLL
PRMN -
PiMo -