Difference between revisions of "NONHSAT136908"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TCAGAGTACGCATGCTCTGATATTCTCTTTGGATTCTTCCAAAATCAGAGGTGAGGAGACCTGGAGGGGGCAGAGCAGTGGCCCAGGGGACAGTGTGGGGTGATCAGATTTCTGAGGAGGGGAGGACAGAGGTACTGGGGACAAGGAGCAGGGTCTCGGGGGAGATCTGGACCCTTGGGAGCCTCCCACCCTCGCTCTGTCATCACCTAGCGTCTTCGATGATATTGCCAAATATTTCTCTAAGAAAGAATGCGAAAAGACGAAAGCCTGGGAGAAAATCATCTAGGTGTATATGAAGATAAACTATGAGGTCATGACTAAACTAGGTTTCAACGTCACCCTCTCACCTTTCATGCGTAATAAACGGGCTGCAGACTTCCAGGGGAATGATTCTGATAATGACCGTAACCATGGGAATCAGGTTGAACGTCCTCAGATGACTTTTGGCAGGCTCCAGGGAATCTtcaggaaatagggaggcccaagaaaaggaggcgaaacagggaacagctcatcggtggagcagtcagaacacacacaacattaatcgattacgttcgtcatctcctgtgggtgcagttcctgctacctccaaaacaattacccacaacaggGACCCAAAAGGGGGAAACATGCCTGGACCCAAAGACTGTGTGATAGAAAGCAGCTGGTGATTTATGAAGAGATCAGCGACCCTGAGGAAGATGACGAGTAACTGGATATGACACATGCCCATGATGAGAAGCAGAATGTGGTGACCTTTCACGAACATGGGCATGGCTGCAGACCCTCGTCATCAGGTGTATAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAAAGTTGAGCATCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGCGTTTCCATTGTATTTTCTTACAGTGTGCCATTCTGTTAGATATTATCCTTTTCATTGATGAGCAAGACATACTTAATGCATTTTTGGTTTGTGTATCCATGCACCTACTTAGAAAAGAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTACCTTCCTCTCTCCCCAGATGTGACTACTGAGGGCAGATCTGAGTGTTTAATTTCAGATTTTCTCCTCTGCATTTacacaccacacacacacacacacacacacacacacCAAGTACCAGTATAAGCATCTCCCATCTGCTTTTCCCCATTGCCATGCATCCTGGTCAAGCCCCCCCTCAATTTGTTTCCTGTTCAGCATGTACTCCCCTCCTCTGATTCCCCATATCAGTCACTGACAGTTAATACACCTTTGCAAACGTTC</dnaseq>| | sequence = <dnaseq>TCAGAGTACGCATGCTCTGATATTCTCTTTGGATTCTTCCAAAATCAGAGGTGAGGAGACCTGGAGGGGGCAGAGCAGTGGCCCAGGGGACAGTGTGGGGTGATCAGATTTCTGAGGAGGGGAGGACAGAGGTACTGGGGACAAGGAGCAGGGTCTCGGGGGAGATCTGGACCCTTGGGAGCCTCCCACCCTCGCTCTGTCATCACCTAGCGTCTTCGATGATATTGCCAAATATTTCTCTAAGAAAGAATGCGAAAAGACGAAAGCCTGGGAGAAAATCATCTAGGTGTATATGAAGATAAACTATGAGGTCATGACTAAACTAGGTTTCAACGTCACCCTCTCACCTTTCATGCGTAATAAACGGGCTGCAGACTTCCAGGGGAATGATTCTGATAATGACCGTAACCATGGGAATCAGGTTGAACGTCCTCAGATGACTTTTGGCAGGCTCCAGGGAATCTtcaggaaatagggaggcccaagaaaaggaggcgaaacagggaacagctcatcggtggagcagtcagaacacacacaacattaatcgattacgttcgtcatctcctgtgggtgcagttcctgctacctccaaaacaattacccacaacaggGACCCAAAAGGGGGAAACATGCCTGGACCCAAAGACTGTGTGATAGAAAGCAGCTGGTGATTTATGAAGAGATCAGCGACCCTGAGGAAGATGACGAGTAACTGGATATGACACATGCCCATGATGAGAAGCAGAATGTGGTGACCTTTCACGAACATGGGCATGGCTGCAGACCCTCGTCATCAGGTGTATAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAAAGTTGAGCATCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGCGTTTCCATTGTATTTTCTTACAGTGTGCCATTCTGTTAGATATTATCCTTTTCATTGATGAGCAAGACATACTTAATGCATTTTTGGTTTGTGTATCCATGCACCTACTTAGAAAAGAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTACCTTCCTCTCTCCCCAGATGTGACTACTGAGGGCAGATCTGAGTGTTTAATTTCAGATTTTCTCCTCTGCATTTacacaccacacacacacacacacacacacacacacCAAGTACCAGTATAAGCATCTCCCATCTGCTTTTCCCCATTGCCATGCATCCTGGTCAAGCCCCCCCTCAATTTGTTTCCTGTTCAGCATGTACTCCCCTCCTCTGATTCCCCATATCAGTCACTGACAGTTAATACACCTTTGCAAACGTTC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG054403]][[Category:Transcripts]] |
Latest revision as of 02:42, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT136908 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1300 nt |
| Genomic location |
chrX+:48015795..48025778 |
| Exon number |
8 |
| Exons |
48015795..48015843,48017442..48017603,48017876..48017990,48018699..48018793,48020363..48020405,48023474..48023623,48024316..48024418,48025196..48025778 |
| Genome context |
|
| Sequence |
000001 TCAGAGTACG CATGCTCTGA TATTCTCTTT GGATTCTTCC AAAATCAGAG GTGAGGAGAC CTGGAGGGGG CAGAGCAGTG 000080
000081 GCCCAGGGGA CAGTGTGGGG TGATCAGATT TCTGAGGAGG GGAGGACAGA GGTACTGGGG ACAAGGAGCA GGGTCTCGGG 000160 000161 GGAGATCTGG ACCCTTGGGA GCCTCCCACC CTCGCTCTGT CATCACCTAG CGTCTTCGAT GATATTGCCA AATATTTCTC 000240 000241 TAAGAAAGAA TGCGAAAAGA CGAAAGCCTG GGAGAAAATC ATCTAGGTGT ATATGAAGAT AAACTATGAG GTCATGACTA 000320 000321 AACTAGGTTT CAACGTCACC CTCTCACCTT TCATGCGTAA TAAACGGGCT GCAGACTTCC AGGGGAATGA TTCTGATAAT 000400 000401 GACCGTAACC ATGGGAATCA GGTTGAACGT CCTCAGATGA CTTTTGGCAG GCTCCAGGGA ATCTtcagga aatagggagg 000480 000481 cccaagaaaa ggaggcgaaa cagggaacag ctcatcggtg gagcagtcag aacacacaca acattaatcg attacgttcg 000560 000561 tcatctcctg tgggtgcagt tcctgctacc tccaaaacaa ttacccacaa caggGACCCA AAAGGGGGAA ACATGCCTGG 000640 000641 ACCCAAAGAC TGTGTGATAG AAAGCAGCTG GTGATTTATG AAGAGATCAG CGACCCTGAG GAAGATGACG AGTAACTGGA 000720 000721 TATGACACAT GCCCATGATG AGAAGCAGAA TGTGGTGACC TTTCACGAAC ATGGGCATGG CTGCAGACCC TCGTCATCAG 000800 000801 GTGTATAGCA AGTGAAAGCA AGTGTTCACA ACAGTGAAAA GTTGAGCATC ATTTTTCTTA GTGTGCCAAG AGTTCGATGT 000880 000881 TAGCGTTTCC ATTGTATTTT CTTACAGTGT GCCATTCTGT TAGATATTAT CCTTTTCATT GATGAGCAAG ACATACTTAA 000960 000961 TGCATTTTTG GTTTGTGTAT CCATGCACCT ACTTAGAAAA GAAGTATTGT CAGGTATTCT CTCCATAGAA CAGCACTACC 001040 001041 TTCCTCTCTC CCCAGATGTG ACTACTGAGG GCAGATCTGA GTGTTTAATT TCAGATTTTC TCCTCTGCAT TTacacacca 001120 001121 cacacacaca cacacacaca cacacacCAA GTACCAGTAT AAGCATCTCC CATCTGCTTT TCCCCATTGC CATGCATCCT 001200 001201 GGTCAAGCCC CCCCTCAATT TGTTTCCTGT TCAGCATGTA CTCCCCTCCT CTGATTCCCC ATATCAGTCA CTGACAGTTA 001280 001281 ATACACCTTT GCAAACGTTC |
Predicted Small Protein
| Name | NONHSAT136908_smProtein_941:1027 |
| Length | 29 |
| Molecular weight | 3541.1866 |
| Aromaticity | 0.285714285714 |
| Instability index | 63.0607142857 |
| Isoelectric point | 8.71087646484 |
| Runs | 6 |
| Runs residual | 0.0110663983903 |
| Runs probability | 0.0401136430548 |
| Amino acid sequence | MSKTYLMHFWFVYPCTYLEKKYCQVFSP |
| Secondary structure | LLLEEEEEEEEELLLLHHHHHHEEELLL |
| PRMN | - |
| PiMo | - |
