Difference between revisions of "NONHSAT137365"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CAGCACCCCTGCCTCATTAACCAGATGGCTGGGATAAGACTCTTGATTTTGAAAATTCAACAACCAGAGTTCAGCTATTTGCAGTGATATGCAGTCATTTGTCACTATCAAAAAGGAAAATAACTAAAATGTGGTGTGTTGGCATTAGTTACTTACTAATGAGCAAGATCAGCACCTGCATTTCAGCTTGGCTCTGTCATTTTCTATTTATTGGAAGAATGGTGTTGTGGTTAAGTGTGTGGTGTGTAGAGGAAGACTATTTGTTTTTTTGTCTTGTTTTGTTTTTATTGAAATATAGCATGCATACTGAAAAATGCACAAATCATATGTGCAGAGCTCACTGAATTTCACAGAATGAATACACCCATGCAATAGCACTCAGATCAAGAGACAGAACATTAGCAGCACCCCCAGAAGGACCACCCCCAGGATCCCTTCCAGTAACCACACCCCCTCCAGTAGAAACTATTATCCTTACTTCTAACATCACAGATTACTTTTGCTTGGTTTTGTAACTTATATAAATGAAATCACACCATATCTACTCTTCGTGATTATTTTCACTCAACATTATGTTTGTGATATCCATTCGTATTGTTACAATAGTTGTTGTTGGTTAACTCTCATTGCTGTATAGTATTACATTGTGTAAATATACCAAAATTTATTTATTCAATTCATTGTACTATTCATGGTTATTAGTTTGCAATTATTGGCAATTATGAATAATGCTGCTATAACCATTTCTTTATATTCTTTGTAGTGAACATGCATGTATTTCTGTTGTTATATATTTAGGAATGAAACTGCTGTGTCATTTTGTGTGCATATATTCAAATATAATAGTTGTTGCCAAACACTTTTTCAAAGTGGTTGTACCACTTTGCATTTCCACCAGCAGTGTATGAGTGTTCTAGTTGCTCTAAATTCTCACCAACACTTGGCATTTTGGTATTTTTTATTTTAGCCAATGTGGTGATCATGTGGTGACCTCTCATTATGGTTTCCTTTTGCATTTCTCTGATGACTAATGAAATTGAGAATCTTTTCAATATATGTTGACTGGCCATTGTACATCTTGTTTTGTTTGTCTTTTAGATGTCTTTTGTCATTGATTTGTAAGGGCTCTTTATGTATTCTGGATATGAATCTTTTGTCAAATATATGCATTGCAAATATATACTTTTTTACTTATTGATATCTTTAATTTGTTTTAAGAAAATTTTTAATTTTTATGGAAATTTTATAGAAATGCTGAAAATCAAACGTTATCTGCAGTGGTAACAGTCTGACTTCTAAACTGCTATATGTAATAGAAGAACAATACATAATTGTTGTATATATTTATGAGGTACATGTAATATTTTGATACAAGCATAAAATATGTAATGATTGTTGATCTCTTTTAATGAACAGAATTCCTTAATCATAAAAAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>CAGCACCCCTGCCTCATTAACCAGATGGCTGGGATAAGACTCTTGATTTTGAAAATTCAACAACCAGAGTTCAGCTATTTGCAGTGATATGCAGTCATTTGTCACTATCAAAAAGGAAAATAACTAAAATGTGGTGTGTTGGCATTAGTTACTTACTAATGAGCAAGATCAGCACCTGCATTTCAGCTTGGCTCTGTCATTTTCTATTTATTGGAAGAATGGTGTTGTGGTTAAGTGTGTGGTGTGTAGAGGAAGACTATTTGTTTTTTTGTCTTGTTTTGTTTTTATTGAAATATAGCATGCATACTGAAAAATGCACAAATCATATGTGCAGAGCTCACTGAATTTCACAGAATGAATACACCCATGCAATAGCACTCAGATCAAGAGACAGAACATTAGCAGCACCCCCAGAAGGACCACCCCCAGGATCCCTTCCAGTAACCACACCCCCTCCAGTAGAAACTATTATCCTTACTTCTAACATCACAGATTACTTTTGCTTGGTTTTGTAACTTATATAAATGAAATCACACCATATCTACTCTTCGTGATTATTTTCACTCAACATTATGTTTGTGATATCCATTCGTATTGTTACAATAGTTGTTGTTGGTTAACTCTCATTGCTGTATAGTATTACATTGTGTAAATATACCAAAATTTATTTATTCAATTCATTGTACTATTCATGGTTATTAGTTTGCAATTATTGGCAATTATGAATAATGCTGCTATAACCATTTCTTTATATTCTTTGTAGTGAACATGCATGTATTTCTGTTGTTATATATTTAGGAATGAAACTGCTGTGTCATTTTGTGTGCATATATTCAAATATAATAGTTGTTGCCAAACACTTTTTCAAAGTGGTTGTACCACTTTGCATTTCCACCAGCAGTGTATGAGTGTTCTAGTTGCTCTAAATTCTCACCAACACTTGGCATTTTGGTATTTTTTATTTTAGCCAATGTGGTGATCATGTGGTGACCTCTCATTATGGTTTCCTTTTGCATTTCTCTGATGACTAATGAAATTGAGAATCTTTTCAATATATGTTGACTGGCCATTGTACATCTTGTTTTGTTTGTCTTTTAGATGTCTTTTGTCATTGATTTGTAAGGGCTCTTTATGTATTCTGGATATGAATCTTTTGTCAAATATATGCATTGCAAATATATACTTTTTTACTTATTGATATCTTTAATTTGTTTTAAGAAAATTTTTAATTTTTATGGAAATTTTATAGAAATGCTGAAAATCAAACGTTATCTGCAGTGGTAACAGTCTGACTTCTAAACTGCTATATGTAATAGAAGAACAATACATAATTGTTGTATATATTTATGAGGTACATGTAATATTTTGATACAAGCATAAAATATGTAATGATTGTTGATCTCTTTTAATGAACAGAATTCCTTAATCATAAAAAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG054671]][[Category:Transcripts]] |
Latest revision as of 02:44, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT137365 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1450 nt |
| Genomic location |
chrX-:67233312..67234743 |
| Exon number |
1 |
| Exons |
67233312..67234743 |
| Genome context |
|
| Sequence |
000001 CAGCACCCCT GCCTCATTAA CCAGATGGCT GGGATAAGAC TCTTGATTTT GAAAATTCAA CAACCAGAGT TCAGCTATTT 000080
000081 GCAGTGATAT GCAGTCATTT GTCACTATCA AAAAGGAAAA TAACTAAAAT GTGGTGTGTT GGCATTAGTT ACTTACTAAT 000160 000161 GAGCAAGATC AGCACCTGCA TTTCAGCTTG GCTCTGTCAT TTTCTATTTA TTGGAAGAAT GGTGTTGTGG TTAAGTGTGT 000240 000241 GGTGTGTAGA GGAAGACTAT TTGTTTTTTT GTCTTGTTTT GTTTTTATTG AAATATAGCA TGCATACTGA AAAATGCACA 000320 000321 AATCATATGT GCAGAGCTCA CTGAATTTCA CAGAATGAAT ACACCCATGC AATAGCACTC AGATCAAGAG ACAGAACATT 000400 000401 AGCAGCACCC CCAGAAGGAC CACCCCCAGG ATCCCTTCCA GTAACCACAC CCCCTCCAGT AGAAACTATT ATCCTTACTT 000480 000481 CTAACATCAC AGATTACTTT TGCTTGGTTT TGTAACTTAT ATAAATGAAA TCACACCATA TCTACTCTTC GTGATTATTT 000560 000561 TCACTCAACA TTATGTTTGT GATATCCATT CGTATTGTTA CAATAGTTGT TGTTGGTTAA CTCTCATTGC TGTATAGTAT 000640 000641 TACATTGTGT AAATATACCA AAATTTATTT ATTCAATTCA TTGTACTATT CATGGTTATT AGTTTGCAAT TATTGGCAAT 000720 000721 TATGAATAAT GCTGCTATAA CCATTTCTTT ATATTCTTTG TAGTGAACAT GCATGTATTT CTGTTGTTAT ATATTTAGGA 000800 000801 ATGAAACTGC TGTGTCATTT TGTGTGCATA TATTCAAATA TAATAGTTGT TGCCAAACAC TTTTTCAAAG TGGTTGTACC 000880 000881 ACTTTGCATT TCCACCAGCA GTGTATGAGT GTTCTAGTTG CTCTAAATTC TCACCAACAC TTGGCATTTT GGTATTTTTT 000960 000961 ATTTTAGCCA ATGTGGTGAT CATGTGGTGA CCTCTCATTA TGGTTTCCTT TTGCATTTCT CTGATGACTA ATGAAATTGA 001040 001041 GAATCTTTTC AATATATGTT GACTGGCCAT TGTACATCTT GTTTTGTTTG TCTTTTAGAT GTCTTTTGTC ATTGATTTGT 001120 001121 AAGGGCTCTT TATGTATTCT GGATATGAAT CTTTTGTCAA ATATATGCAT TGCAAATATA TACTTTTTTA CTTATTGATA 001200 001201 TCTTTAATTT GTTTTAAGAA AATTTTTAAT TTTTATGGAA ATTTTATAGA AATGCTGAAA ATCAAACGTT ATCTGCAGTG 001280 001281 GTAACAGTCT GACTTCTAAA CTGCTATATG TAATAGAAGA ACAATACATA ATTGTTGTAT ATATTTATGA GGTACATGTA 001360 001361 ATATTTTGAT ACAAGCATAA AATATGTAAT GATTGTTGAT CTCTTTTAAT GAACAGAATT CCTTAATCAT AAAAAAAAAA 001440 001441 AAAAAAAAAA |
Predicted Small Protein
| Name | NONHSAT137365_smProtein_128:343 |
| Length | 72 |
| Molecular weight | 8503.2542 |
| Aromaticity | 0.169014084507 |
| Instability index | 40.0971830986 |
| Isoelectric point | 7.60406494141 |
| Runs | 9 |
| Runs residual | 0.0217939214233 |
| Runs probability | 0.0162221044574 |
| Amino acid sequence | MWCVGISYLLMSKISTCISAWLCHFLFIGRMVLWLSVWCVEEDYLFFCLVLFLLKYSMHT EKCTNHMCRAH |
| Secondary structure | LEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEELLHHHHHHHHHHHHHHHHLLLH HHHHHHHHHLL |
| PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLLL LLLLLLLLLLL |
| PiMo | iiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTiii iiiiiiiiiii |
