Difference between revisions of "NONHSAT138105"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GCCTGAGAGTGGCAGCAAAGTCCTGGGGGGCCCTTGCAACTTCTATTGGCACAGCTGGCTTAGTTGCTCAGACCCTACCTGCCTTGGTTCAGCAGCGGGTCAATGCTGTCAGGAAACTTCAGGCAGCATATGCACAAGTAGAAGCTCAAGTCTATAAAGGTCTTTACGGTCTTGAAAAAAATGTGCTTCCTTTTATCAACCTCTGTTTGATAAAAGATCTGAGATTATCAGTGTAATGTATGAGCCCGTAGAAAGTGAATGTCAGTGGGAAGTAGGTGGTCAGGAAGGAAGGAGCTTGGGAGGAAATGGAAAGAGCATGAAAACAAAGGACAAATAGATGGAATACCTCGCTTTAGGTTGACAGCTTTTAAAAATGTAAGGATTTTTGGTAGGATGATCCCAGAAAATGATGAACTTGTACTAGAGCACTTGAAAGATGTGAAAATAAATCTTTCAGGGGTTGAGAAACCAATGAGCTTCACCACAAAATTTAAGTTATAGAAATATTTTTCAGTGAAGTGAAGTTCTGACAAAAACATGTCAAATATTATCAGACCCAGATGATTCCGATCTCTTCTCTCAAGGGCCAGGAACAATCAGCAGCACAGGGTGTGAGATCTGTTGGAAAGAGGGGAAAAATATTATGGTGAAAAATATCAAGAAGCAAAAATGTGAGGGTCCTGGAAGTGTTGTACTTACCAGTAGGAACATTCTCAGCTATTCTTTTTCCCCTACATATTTCTATTCCCCAGGTTCTGCTGAGCATAGAGTATGGGATACGGCTACTGAGGATAAACTGGAATACCTTTTCCAAGAACGTCTCCCAATATCTGAATTATTCTTCTCTAAAGAAGCGGCTGAATATAAGTATGAAAATTCTGATGAGGAGGCTCAAGAAG</dnaseq>| | sequence = <dnaseq>GCCTGAGAGTGGCAGCAAAGTCCTGGGGGGCCCTTGCAACTTCTATTGGCACAGCTGGCTTAGTTGCTCAGACCCTACCTGCCTTGGTTCAGCAGCGGGTCAATGCTGTCAGGAAACTTCAGGCAGCATATGCACAAGTAGAAGCTCAAGTCTATAAAGGTCTTTACGGTCTTGAAAAAAATGTGCTTCCTTTTATCAACCTCTGTTTGATAAAAGATCTGAGATTATCAGTGTAATGTATGAGCCCGTAGAAAGTGAATGTCAGTGGGAAGTAGGTGGTCAGGAAGGAAGGAGCTTGGGAGGAAATGGAAAGAGCATGAAAACAAAGGACAAATAGATGGAATACCTCGCTTTAGGTTGACAGCTTTTAAAAATGTAAGGATTTTTGGTAGGATGATCCCAGAAAATGATGAACTTGTACTAGAGCACTTGAAAGATGTGAAAATAAATCTTTCAGGGGTTGAGAAACCAATGAGCTTCACCACAAAATTTAAGTTATAGAAATATTTTTCAGTGAAGTGAAGTTCTGACAAAAACATGTCAAATATTATCAGACCCAGATGATTCCGATCTCTTCTCTCAAGGGCCAGGAACAATCAGCAGCACAGGGTGTGAGATCTGTTGGAAAGAGGGGAAAAATATTATGGTGAAAAATATCAAGAAGCAAAAATGTGAGGGTCCTGGAAGTGTTGTACTTACCAGTAGGAACATTCTCAGCTATTCTTTTTCCCCTACATATTTCTATTCCCCAGGTTCTGCTGAGCATAGAGTATGGGATACGGCTACTGAGGATAAACTGGAATACCTTTTCCAAGAACGTCTCCCAATATCTGAATTATTCTTCTCTAAAGAAGCGGCTGAATATAAGTATGAAAATTCTGATGAGGAGGCTCAAGAAG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG055063]][[Category:Transcripts]] |
Latest revision as of 02:48, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT138105 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
899 nt |
| Genomic location |
chrX-:105709772..105710670 |
| Exon number |
1 |
| Exons |
105709772..105710670 |
| Genome context |
|
| Sequence |
000001 GCCTGAGAGT GGCAGCAAAG TCCTGGGGGG CCCTTGCAAC TTCTATTGGC ACAGCTGGCT TAGTTGCTCA GACCCTACCT 000080
000081 GCCTTGGTTC AGCAGCGGGT CAATGCTGTC AGGAAACTTC AGGCAGCATA TGCACAAGTA GAAGCTCAAG TCTATAAAGG 000160 000161 TCTTTACGGT CTTGAAAAAA ATGTGCTTCC TTTTATCAAC CTCTGTTTGA TAAAAGATCT GAGATTATCA GTGTAATGTA 000240 000241 TGAGCCCGTA GAAAGTGAAT GTCAGTGGGA AGTAGGTGGT CAGGAAGGAA GGAGCTTGGG AGGAAATGGA AAGAGCATGA 000320 000321 AAACAAAGGA CAAATAGATG GAATACCTCG CTTTAGGTTG ACAGCTTTTA AAAATGTAAG GATTTTTGGT AGGATGATCC 000400 000401 CAGAAAATGA TGAACTTGTA CTAGAGCACT TGAAAGATGT GAAAATAAAT CTTTCAGGGG TTGAGAAACC AATGAGCTTC 000480 000481 ACCACAAAAT TTAAGTTATA GAAATATTTT TCAGTGAAGT GAAGTTCTGA CAAAAACATG TCAAATATTA TCAGACCCAG 000560 000561 ATGATTCCGA TCTCTTCTCT CAAGGGCCAG GAACAATCAG CAGCACAGGG TGTGAGATCT GTTGGAAAGA GGGGAAAAAT 000640 000641 ATTATGGTGA AAAATATCAA GAAGCAAAAA TGTGAGGGTC CTGGAAGTGT TGTACTTACC AGTAGGAACA TTCTCAGCTA 000720 000721 TTCTTTTTCC CCTACATATT TCTATTCCCC AGGTTCTGCT GAGCATAGAG TATGGGATAC GGCTACTGAG GATAAACTGG 000800 000801 AATACCTTTT CCAAGAACGT CTCCCAATAT CTGAATTATT CTTCTCTAAA GAAGCGGCTG AATATAAGTA TGAAAATTCT 000880 000881 GATGAGGAGG CTCAAGAAG |
Predicted Small Protein
| Name | NONHSAT138105_smProtein_560:649 |
| Length | 30 |
| Molecular weight | 3125.6465 |
| Aromaticity | 0.0344827586207 |
| Instability index | 64.4448275862 |
| Isoelectric point | 11.0969848633 |
| Runs | 5 |
| Runs residual | 0.0271551724138 |
| Runs probability | 0.0472354707648 |
| Amino acid sequence | MIPISSLKGQEQSAAQGVRSVGKRGKILW |
| Secondary structure | LLLLLLLLLHHHHHHHHHHHHLLLLEEEL |
| PRMN | - |
| PiMo | - |
