Difference between revisions of "NONHSAT138380"

From LncRNAWiki
Jump to: navigation, search
(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
 
(One intermediate revision by one other user not shown)
Line 42: Line 42:
 
sequence = <dnaseq>GGGAAGGAAGGCGCTGCCAGGAAAGGGGATCGCGAAGGGGAGCGGGAGCAGGAGCGAACTAGCGCGAGCGTCTGGGGCACTTTAGCCGCCCCTTTCCAGCCGCCCCCTCACGCGCGAGCTCCCCCGCCCCCCGGGCGGCTGCAGCGCTTCCCTCACCCCCACTCCCTGAGGTTTTTCTTCCCCCAGTCCCTCAGCTGCTGCTGCTGCTCAGGAGGTCAGATCTGCCACTGATGGTAATACCAGCACCACTCCGCCCACCTCTGCCAAGAAGAGAAAGTTAAAcagcagcagcagtagcagcagtaacagtagTAACGAGAGAGAAGACTTTGATTCCACCTCTTCCTCCTCTTCCACTCCTCCTTTACAACCCAGGGATTCGGCATCCCCTTCAACCTCGTCCTTCTGCCTGGGGGTTTCAGTGGCTGCTTCCAGCCACGTACCGATACAGAAGAAGCTGCGTTTTGAAGACACCCTGGAGTTTGTAGGGTTTGATGCGAAGATGGCTGAGGAAtcctcctcctcctcctcctcATCTTCACCAACTGCTGCAACATCTCAGCAGCAGCAACTTAAAAATAAGAGTATATTAATCTCTTCTGTGGCTTCGGTGCATCATGCAAACGGCCTAGCCAAATCTTCTACCACCGTCTCTAGCTTTGCTAACAGCAAACCTGGCTCTGCTAAGAAGTTAGTGATCAAGAACTTTAAAGATAAGCCTAAATTACCAGAAAACTACACAGATGAAACCTGGCAAAAACTGAAAGAAGCAGTGGAAGCTATTCAGAATAGTACTTCAATTAAGTACAATTTAGAAGAACTCTACCAGGTATGTA</dnaseq>|
 
sequence = <dnaseq>GGGAAGGAAGGCGCTGCCAGGAAAGGGGATCGCGAAGGGGAGCGGGAGCAGGAGCGAACTAGCGCGAGCGTCTGGGGCACTTTAGCCGCCCCTTTCCAGCCGCCCCCTCACGCGCGAGCTCCCCCGCCCCCCGGGCGGCTGCAGCGCTTCCCTCACCCCCACTCCCTGAGGTTTTTCTTCCCCCAGTCCCTCAGCTGCTGCTGCTGCTCAGGAGGTCAGATCTGCCACTGATGGTAATACCAGCACCACTCCGCCCACCTCTGCCAAGAAGAGAAAGTTAAAcagcagcagcagtagcagcagtaacagtagTAACGAGAGAGAAGACTTTGATTCCACCTCTTCCTCCTCTTCCACTCCTCCTTTACAACCCAGGGATTCGGCATCCCCTTCAACCTCGTCCTTCTGCCTGGGGGTTTCAGTGGCTGCTTCCAGCCACGTACCGATACAGAAGAAGCTGCGTTTTGAAGACACCCTGGAGTTTGTAGGGTTTGATGCGAAGATGGCTGAGGAAtcctcctcctcctcctcctcATCTTCACCAACTGCTGCAACATCTCAGCAGCAGCAACTTAAAAATAAGAGTATATTAATCTCTTCTGTGGCTTCGGTGCATCATGCAAACGGCCTAGCCAAATCTTCTACCACCGTCTCTAGCTTTGCTAACAGCAAACCTGGCTCTGCTAAGAAGTTAGTGATCAAGAACTTTAAAGATAAGCCTAAATTACCAGAAAACTACACAGATGAAACCTGGCAAAAACTGAAAGAAGCAGTGGAAGCTATTCAGAATAGTACTTCAATTAAGTACAATTTAGAAGAACTCTACCAGGTATGTA</dnaseq>|
 
}}
 
}}
[[Category:Sense]]
+
[[Category:Sense]][[Category:NONHSAG055217]][[Category:Transcripts]]

Latest revision as of 02:49, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT138380

Source

NONCODE4.0

Same with

,

Classification

sense

Length

836 nt

Genomic location

chrX-:119691772..119695157

Exon number

3

Exons

119691772..119691894,119693938..119694480,119694988..119695157

Genome context

Sequence
000001 GGGAAGGAAG GCGCTGCCAG GAAAGGGGAT CGCGAAGGGG AGCGGGAGCA GGAGCGAACT AGCGCGAGCG TCTGGGGCAC 000080
000081 TTTAGCCGCC CCTTTCCAGC CGCCCCCTCA CGCGCGAGCT CCCCCGCCCC CCGGGCGGCT GCAGCGCTTC CCTCACCCCC 000160
000161 ACTCCCTGAG GTTTTTCTTC CCCCAGTCCC TCAGCTGCTG CTGCTGCTCA GGAGGTCAGA TCTGCCACTG ATGGTAATAC 000240
000241 CAGCACCACT CCGCCCACCT CTGCCAAGAA GAGAAAGTTA AAcagcagca gcagtagcag cagtaacagt agTAACGAGA 000320
000321 GAGAAGACTT TGATTCCACC TCTTCCTCCT CTTCCACTCC TCCTTTACAA CCCAGGGATT CGGCATCCCC TTCAACCTCG 000400
000401 TCCTTCTGCC TGGGGGTTTC AGTGGCTGCT TCCAGCCACG TACCGATACA GAAGAAGCTG CGTTTTGAAG ACACCCTGGA 000480
000481 GTTTGTAGGG TTTGATGCGA AGATGGCTGA GGAAtcctcc tcctcctcct cctcATCTTC ACCAACTGCT GCAACATCTC 000560
000561 AGCAGCAGCA ACTTAAAAAT AAGAGTATAT TAATCTCTTC TGTGGCTTCG GTGCATCATG CAAACGGCCT AGCCAAATCT 000640
000641 TCTACCACCG TCTCTAGCTT TGCTAACAGC AAACCTGGCT CTGCTAAGAA GTTAGTGATC AAGAACTTTA AAGATAAGCC 000720
000721 TAAATTACCA GAAAACTACA CAGATGAAAC CTGGCAAAAA CTGAAAGAAG CAGTGGAAGC TATTCAGAAT AGTACTTCAA 000800
000801 TTAAGTACAA TTTAGAAGAA CTCTACCAGG TATGTA
[back to top]

Predicted Small Protein

Name NONHSAT138380_smProtein_494:592
Length 33
Molecular weight 3882.5483
Aromaticity 0.0625
Instability index 100.61875
Isoelectric point 12.0084838867
Runs 5
Runs residual 0.0353954081633
Runs probability 0.0331390213743
Amino acid sequence MRRWLRNPPPPPPHLHQLLQHLSSSNLKIRVY
Secondary structure LLLLLLLLLLLLHHHHHHHHHHLLLLLLEEEL
PRMN -
PiMo -