Difference between revisions of "NONHSAT143681"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>GCGGCGACCGCCGGCAACTGTTGTGGCTGCCGCATTGCTCCCGCCGGGCTGTAGCTGAGCGCGGAGCCCGTGGGGGCCGGTGAGATGGAACTGTTTTCCCGCGTTGAGACGTGCGGTCCGCTTGTGCTTTCAGAACTAGTAAGACTGCTGCAGAGTCCGGAGGAAGAAGTCACCTAGAAAAGTCTGGGACAGGGCAGTAAGCTTCCTTCTTAATGTTTGACCTTTGGGGGCCGATGTGTGATACCTCGGATTTGAATCAAGAATCTCCAAGCCCATTTTCCGCATGCATGTAAACGTGATGTACCGGGATGGGGGCTGGTGGTGGAGGAGGAGCCAGCCCAACGGATATGCGTTTCCAGTGGCAGGGACTTGTGTTAATTTCTTttttcttttttctttttttttcttttttccgagacggagtctcactctgtcgcccaggcgggagtgcagtggcgcgatctcggctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggaatacaggtgtgcgccaccacgcccggctaatttttgtgtttttagtagagacggggtttcactatgttggccaggctggtctggaactcctgacctcgtgattcgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccAACTTGTGCTAATttcttaaacttgcgtgatcacctggtg</dnaseq>| | sequence = <dnaseq>GCGGCGACCGCCGGCAACTGTTGTGGCTGCCGCATTGCTCCCGCCGGGCTGTAGCTGAGCGCGGAGCCCGTGGGGGCCGGTGAGATGGAACTGTTTTCCCGCGTTGAGACGTGCGGTCCGCTTGTGCTTTCAGAACTAGTAAGACTGCTGCAGAGTCCGGAGGAAGAAGTCACCTAGAAAAGTCTGGGACAGGGCAGTAAGCTTCCTTCTTAATGTTTGACCTTTGGGGGCCGATGTGTGATACCTCGGATTTGAATCAAGAATCTCCAAGCCCATTTTCCGCATGCATGTAAACGTGATGTACCGGGATGGGGGCTGGTGGTGGAGGAGGAGCCAGCCCAACGGATATGCGTTTCCAGTGGCAGGGACTTGTGTTAATTTCTTttttcttttttctttttttttcttttttccgagacggagtctcactctgtcgcccaggcgggagtgcagtggcgcgatctcggctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggaatacaggtgtgcgccaccacgcccggctaatttttgtgtttttagtagagacggggtttcactatgttggccaggctggtctggaactcctgacctcgtgattcgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccAACTTGTGCTAATttcttaaacttgcgtgatcacctggtg</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG019971]][[Category:Transcripts]] |
Latest revision as of 03:10, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT143681 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
734 nt |
Genomic location |
chr16-:74400933..74402046 |
Exon number |
2 |
Exons |
74400933..74401582,74401963..74402046 |
Genome context |
|
Sequence |
000001 GCGGCGACCG CCGGCAACTG TTGTGGCTGC CGCATTGCTC CCGCCGGGCT GTAGCTGAGC GCGGAGCCCG TGGGGGCCGG 000080
000081 TGAGATGGAA CTGTTTTCCC GCGTTGAGAC GTGCGGTCCG CTTGTGCTTT CAGAACTAGT AAGACTGCTG CAGAGTCCGG 000160 000161 AGGAAGAAGT CACCTAGAAA AGTCTGGGAC AGGGCAGTAA GCTTCCTTCT TAATGTTTGA CCTTTGGGGG CCGATGTGTG 000240 000241 ATACCTCGGA TTTGAATCAA GAATCTCCAA GCCCATTTTC CGCATGCATG TAAACGTGAT GTACCGGGAT GGGGGCTGGT 000320 000321 GGTGGAGGAG GAGCCAGCCC AACGGATATG CGTTTCCAGT GGCAGGGACT TGTGTTAATT TCTTttttct tttttctttt 000400 000401 tttttctttt ttccgagacg gagtctcact ctgtcgccca ggcgggagtg cagtggcgcg atctcggctc actgcaacct 000480 000481 ctgcctcctg ggttcaagca attctcctgc ctcagcctcc caagtagctg ggaatacagg tgtgcgccac cacgcccggc 000560 000561 taatttttgt gtttttagta gagacggggt ttcactatgt tggccaggct ggtctggaac tcctgacctc gtgattcgcc 000640 000641 cgcctcagcc tcccaaagtg ctgggattac aggcgtgagc cactgcgccc ggccAACTTG TGCTAATttc ttaaacttgc 000720 000721 gtgatcacct ggtg |
Predicted Small Protein
Name | NONHSAT143681_smProtein_308:526 |
Length | 73 |
Molecular weight | 7700.8334 |
Aromaticity | 0.152777777778 |
Instability index | 44.7763888889 |
Isoelectric point | 11.4196166992 |
Runs | 9 |
Runs residual | 0.0159164639092 |
Runs probability | 0.0486663133722 |
Amino acid sequence | MGAGGGGGASPTDMRFQWQGLVLISFFFFLFFSFFRDGVSLCRPGGSAVARSRLTATSAS WVQAILLPQPPK |
Secondary structure | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLEEEELLLLLEEEEEEEELLLHH HHHHHHLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLL |
PiMo | oooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiii |