Difference between revisions of "NONHSAT144856"

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sequence = <dnaseq>CTCGTGCGTCACGACGCCGCCAGCTGATCGGAGCCTGGAGCCGGTGTGTGCTGGGTGCCGAGAAGAGACAGCGCCGCCGGCCGTGGGGAGCGGACGCAGTGATTTGCTCCCCCTCGTGCAGCAACCCCCACACCCAGCACCAGGAGCCTGTTCCTCTCACGCCCTCACCTGGCTGAGCCGCAGTAGTTCTTCAGTGGCAAGCTTTATGTCCTGACCCAGCTAAAGCTGCCAGTTGAAGAACTGTTGCCCTCTGCCCCTGGCTTCGAGGAGGAGGAGGAGCTGCTTTCCCCATCATCTGGAAGGTGACAGAAATGGGCTGGGAAGGTCCGAACAGCAGGGTGGATGATACGTTTTGGGCAAGTTGGAGAGCCTTTGCCCAGATTGGCCCAGCAAGGAGCGGTTTTAGATTAGAGACACTGGCTGGATTGAGGAGTAGAAGGCTCAAACAACCCAAGGAAGCTGTGTCTGTTCGATTTGGTGGGAGGAGATGTGCAGGGAGCTGTATCTTGTCCTCCGCTTGTGAAAAACTCAAGGATGTGGAGAAGAGTAGACCGTGGAACCCTGCTCTTCTGCAGCCAAGCTGAGGGGCAGGATGCGTGTGGGACAGTGGTAGAGAAGCAGGGGATAGACTCATAGGCTGCAACAAAGGTGACTCTGTCCCTGGACACTGCCTCCGTACTTTCTCCTTGCTTCACTGGCCACAGCATCTCCCTCCAGCCCTCGCTATGTGCCTCTGCCATCTTCACCCATCATGGAGCAGAGGTGAGGAGAGGCAGCCTGGGAATATGGAGACCAGTGAAGGACCAGGCCTGGAGAGCACAGGGTCCTACCTGGGCATCCAGCAGAGGAGCCCCTAAAGGCCAGGAGCACCCCAAGAGGAGGGAGGGCAGCCAGCCTCCATTGACGGCGAGCCTCCAGCCCTCTCCTACTTTGATCACCATTTCTCTCCAGGCTTTCTGCCTCCGAGATGTGGCACCATAGTGCGGTGCCCTGTGGCTTCACCGCCCTACTTCCACCTCCGCCCAGCCTGTAATGTTTATATAAGCAGCCTCAAGGACCAAGAACCATCTGCGAAAGGACACACACAGGAAATTCATAAAAGAAATCTGAATGGATAAAACCATGAAAAAAAGTATGCTTCATTAGTAATTAAAGAAAGGCAAATAGAGCTGGAAGCATTTTTCCCTTAGCAAACCATAACAGAAAAAAATAAGACCCAATATTGGCAAAGAGACTACTGAAAAAACATTCCCATACATTGCGTGTGGGAGTATACATCGGTGCAGGCTTCCTGGATGACAGTTGGGTGATATGTGTCATGTGGCCTAAAAGCCTCCATGTCATTTGACCTACGAATTCTATCTTTGGGAATTTATCCTAAGAAAATACTTAAGGATTTAGTTAGTGATAAGATGTTCATCCCAGCATTGCAATGGAGAAAAATGGGAAGCAATGGTTTGGTTGGGAATTTATTCCTTTTCTGCTGTAACGAAAGTTTGCAATAGGGGATTGCTTAAGTAAATTATTGTATCTCCATCCAGATGGTGGAGTACCGCGCAGACATTAAAAGTCATGTAAAAGAACATCTGACTGAAAGAAAAATGCTCCTTGAATATTAAAAGGTTGTAAAAATAGTGCATGTTATGTGATTTCAATTTTGTTTTTTAAAATATGGGTGTATGCTTGTATACGTAGAGCAGATAAAAAAGACGGAAGGCATACTAAAAAATGTTGAGTGGTTATCTTTGTATGGTGGAACAAAGTCACTGTAATTTTCATCTTTGGTTTTTCTGTAATTTCCAAATTTTCCACATTTTGTATTTCATATAATATAATTTAAGAGATCA</dnaseq>|
 
sequence = <dnaseq>CTCGTGCGTCACGACGCCGCCAGCTGATCGGAGCCTGGAGCCGGTGTGTGCTGGGTGCCGAGAAGAGACAGCGCCGCCGGCCGTGGGGAGCGGACGCAGTGATTTGCTCCCCCTCGTGCAGCAACCCCCACACCCAGCACCAGGAGCCTGTTCCTCTCACGCCCTCACCTGGCTGAGCCGCAGTAGTTCTTCAGTGGCAAGCTTTATGTCCTGACCCAGCTAAAGCTGCCAGTTGAAGAACTGTTGCCCTCTGCCCCTGGCTTCGAGGAGGAGGAGGAGCTGCTTTCCCCATCATCTGGAAGGTGACAGAAATGGGCTGGGAAGGTCCGAACAGCAGGGTGGATGATACGTTTTGGGCAAGTTGGAGAGCCTTTGCCCAGATTGGCCCAGCAAGGAGCGGTTTTAGATTAGAGACACTGGCTGGATTGAGGAGTAGAAGGCTCAAACAACCCAAGGAAGCTGTGTCTGTTCGATTTGGTGGGAGGAGATGTGCAGGGAGCTGTATCTTGTCCTCCGCTTGTGAAAAACTCAAGGATGTGGAGAAGAGTAGACCGTGGAACCCTGCTCTTCTGCAGCCAAGCTGAGGGGCAGGATGCGTGTGGGACAGTGGTAGAGAAGCAGGGGATAGACTCATAGGCTGCAACAAAGGTGACTCTGTCCCTGGACACTGCCTCCGTACTTTCTCCTTGCTTCACTGGCCACAGCATCTCCCTCCAGCCCTCGCTATGTGCCTCTGCCATCTTCACCCATCATGGAGCAGAGGTGAGGAGAGGCAGCCTGGGAATATGGAGACCAGTGAAGGACCAGGCCTGGAGAGCACAGGGTCCTACCTGGGCATCCAGCAGAGGAGCCCCTAAAGGCCAGGAGCACCCCAAGAGGAGGGAGGGCAGCCAGCCTCCATTGACGGCGAGCCTCCAGCCCTCTCCTACTTTGATCACCATTTCTCTCCAGGCTTTCTGCCTCCGAGATGTGGCACCATAGTGCGGTGCCCTGTGGCTTCACCGCCCTACTTCCACCTCCGCCCAGCCTGTAATGTTTATATAAGCAGCCTCAAGGACCAAGAACCATCTGCGAAAGGACACACACAGGAAATTCATAAAAGAAATCTGAATGGATAAAACCATGAAAAAAAGTATGCTTCATTAGTAATTAAAGAAAGGCAAATAGAGCTGGAAGCATTTTTCCCTTAGCAAACCATAACAGAAAAAAATAAGACCCAATATTGGCAAAGAGACTACTGAAAAAACATTCCCATACATTGCGTGTGGGAGTATACATCGGTGCAGGCTTCCTGGATGACAGTTGGGTGATATGTGTCATGTGGCCTAAAAGCCTCCATGTCATTTGACCTACGAATTCTATCTTTGGGAATTTATCCTAAGAAAATACTTAAGGATTTAGTTAGTGATAAGATGTTCATCCCAGCATTGCAATGGAGAAAAATGGGAAGCAATGGTTTGGTTGGGAATTTATTCCTTTTCTGCTGTAACGAAAGTTTGCAATAGGGGATTGCTTAAGTAAATTATTGTATCTCCATCCAGATGGTGGAGTACCGCGCAGACATTAAAAGTCATGTAAAAGAACATCTGACTGAAAGAAAAATGCTCCTTGAATATTAAAAGGTTGTAAAAATAGTGCATGTTATGTGATTTCAATTTTGTTTTTTAAAATATGGGTGTATGCTTGTATACGTAGAGCAGATAAAAAAGACGGAAGGCATACTAAAAAATGTTGAGTGGTTATCTTTGTATGGTGGAACAAAGTCACTGTAATTTTCATCTTTGGTTTTTCTGTAATTTCCAAATTTTCCACATTTTGTATTTCATATAATATAATTTAAGAGATCA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG020474]][[Category:Transcripts]]

Latest revision as of 03:15, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT144856

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1847 nt

Genomic location

chr17-:1614798..1619566

Exon number

3

Exons

1614798..1616189,1616997..1617308,1619424..1619566

Genome context

Sequence
000001 CTCGTGCGTC ACGACGCCGC CAGCTGATCG GAGCCTGGAG CCGGTGTGTG CTGGGTGCCG AGAAGAGACA GCGCCGCCGG 000080
000081 CCGTGGGGAG CGGACGCAGT GATTTGCTCC CCCTCGTGCA GCAACCCCCA CACCCAGCAC CAGGAGCCTG TTCCTCTCAC 000160
000161 GCCCTCACCT GGCTGAGCCG CAGTAGTTCT TCAGTGGCAA GCTTTATGTC CTGACCCAGC TAAAGCTGCC AGTTGAAGAA 000240
000241 CTGTTGCCCT CTGCCCCTGG CTTCGAGGAG GAGGAGGAGC TGCTTTCCCC ATCATCTGGA AGGTGACAGA AATGGGCTGG 000320
000321 GAAGGTCCGA ACAGCAGGGT GGATGATACG TTTTGGGCAA GTTGGAGAGC CTTTGCCCAG ATTGGCCCAG CAAGGAGCGG 000400
000401 TTTTAGATTA GAGACACTGG CTGGATTGAG GAGTAGAAGG CTCAAACAAC CCAAGGAAGC TGTGTCTGTT CGATTTGGTG 000480
000481 GGAGGAGATG TGCAGGGAGC TGTATCTTGT CCTCCGCTTG TGAAAAACTC AAGGATGTGG AGAAGAGTAG ACCGTGGAAC 000560
000561 CCTGCTCTTC TGCAGCCAAG CTGAGGGGCA GGATGCGTGT GGGACAGTGG TAGAGAAGCA GGGGATAGAC TCATAGGCTG 000640
000641 CAACAAAGGT GACTCTGTCC CTGGACACTG CCTCCGTACT TTCTCCTTGC TTCACTGGCC ACAGCATCTC CCTCCAGCCC 000720
000721 TCGCTATGTG CCTCTGCCAT CTTCACCCAT CATGGAGCAG AGGTGAGGAG AGGCAGCCTG GGAATATGGA GACCAGTGAA 000800
000801 GGACCAGGCC TGGAGAGCAC AGGGTCCTAC CTGGGCATCC AGCAGAGGAG CCCCTAAAGG CCAGGAGCAC CCCAAGAGGA 000880
000881 GGGAGGGCAG CCAGCCTCCA TTGACGGCGA GCCTCCAGCC CTCTCCTACT TTGATCACCA TTTCTCTCCA GGCTTTCTGC 000960
000961 CTCCGAGATG TGGCACCATA GTGCGGTGCC CTGTGGCTTC ACCGCCCTAC TTCCACCTCC GCCCAGCCTG TAATGTTTAT 001040
001041 ATAAGCAGCC TCAAGGACCA AGAACCATCT GCGAAAGGAC ACACACAGGA AATTCATAAA AGAAATCTGA ATGGATAAAA 001120
001121 CCATGAAAAA AAGTATGCTT CATTAGTAAT TAAAGAAAGG CAAATAGAGC TGGAAGCATT TTTCCCTTAG CAAACCATAA 001200
001201 CAGAAAAAAA TAAGACCCAA TATTGGCAAA GAGACTACTG AAAAAACATT CCCATACATT GCGTGTGGGA GTATACATCG 001280
001281 GTGCAGGCTT CCTGGATGAC AGTTGGGTGA TATGTGTCAT GTGGCCTAAA AGCCTCCATG TCATTTGACC TACGAATTCT 001360
001361 ATCTTTGGGA ATTTATCCTA AGAAAATACT TAAGGATTTA GTTAGTGATA AGATGTTCAT CCCAGCATTG CAATGGAGAA 001440
001441 AAATGGGAAG CAATGGTTTG GTTGGGAATT TATTCCTTTT CTGCTGTAAC GAAAGTTTGC AATAGGGGAT TGCTTAAGTA 001520
001521 AATTATTGTA TCTCCATCCA GATGGTGGAG TACCGCGCAG ACATTAAAAG TCATGTAAAA GAACATCTGA CTGAAAGAAA 001600
001601 AATGCTCCTT GAATATTAAA AGGTTGTAAA AATAGTGCAT GTTATGTGAT TTCAATTTTG TTTTTTAAAA TATGGGTGTA 001680
001681 TGCTTGTATA CGTAGAGCAG ATAAAAAAGA CGGAAGGCAT ACTAAAAAAT GTTGAGTGGT TATCTTTGTA TGGTGGAACA 001760
001761 AAGTCACTGT AATTTTCATC TTTGGTTTTT CTGTAATTTC CAAATTTTCC ACATTTTGTA TTTCATATAA TATAATTTAA 001840
001841 GAGATCA
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Predicted Small Protein

Name NONHSAT144856_smProtein_311:583
Length 91
Molecular weight 10034.3875
Aromaticity 0.0888888888889
Instability index 69.82
Isoelectric point 10.4857788086
Runs 13
Runs residual 0.00458553791887
Runs probability 0.0453100158983
Amino acid sequence MGWEGPNSRVDDTFWASWRAFAQIGPARSGFRLETLAGLRSRRLKQPKEAVSVRFGGRRC
AGSCILSSACEKLKDVEKSRPWNPALLQPS
Secondary structure LLLLLLLLLLLLLHHHHHHHHHHHLLLLLLLLHHHHHHLHHHHLLLLLEEEEEELLLEEE
LLLHHHHHHHHHHHHHHHLLLLLLLLLLLL
PRMN -
PiMo -