Difference between revisions of "NONHSAT145394"

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sequence = <dnaseq>CCGGAACCCTGTGTGCTGGGGAGGAATCCCGCAGTGGCCGGGGGGCTTGAGGCCGCTGCTTTGTCTCTTCGTCCAGAGCCTTATGTAAGAGCTTTTCTCGGGAAACAGGAAGTCCTGCTTGCCAATTTCAGCACAGGGAGTAGTGCAGGCCTTATTCCAACACACCCGGCCCAGCCTTAACCCCAGAACTCAGCCAGTTTCTTGCTTCCGTGCCCCTGGTTCTCCTCCCCATCGAGCCCACCCCTCCTTTCCCACCTTCAGTCACCCCTAGTGAACTGCCCCAGCGATCTCTGCTGTGCTTGACCCCGAGGGTCTTCCACCCTCGCCCTGACCCTGGACACTGCCCAGCTTGGCCCCCCATCCTGCTCCTGGCACAATGCCCTCTAGCCAGCCAACCTTCCCTCCCCCAACCCTGGGGCCGCCCCAGGGTTCCTGCGCACTGCCTGTTCCTCCTGGGTGTCACTGGCAGCCCTGTCCTTCCTAGAGGGACTGGAACCTAATTCTCCTGAGGCTGAGGGAGGGTGGAGGGTCTCAAGGCAACGCTGGCCCCACGACGGAGTGCCAGGAGCACTAACAGTACCCTTAGCTTGCTTTCCTCCTCCCTCCTTTTTATTTTCAAGTTCCTTTTTATTTCTCCTTGCGTAACAACCTTCTTCCCTTCTGCACCACTGCCCGTACCCTTACCCGCCCCGCCACCTCCTTGCTACCCCACTCTTGAAACCACAGCTGTTGGCAGGGTCCCCAGCTCATGCCAGCCTCATCTCCTTTCTTGCTAGCCCCCAAAGGGCCTCCAGGCAACATGGGGGGCCCAGTCAGAGAGCCGGCACTCTCAGTTGCCCTCTGGTTGAGTTGGGGGGCAGCTCTGGGGGCCGTGGCTTGTGCCATGGCTCTGCTGACCCAACAAACAGAGCTGCAGAGCCTCAGGAGAGAGGTGAGCCGGCTGCAGGGGACAGGAGGCCCCTCCCAGAATGGGGAAGGGTATCCCTGGCAGAGTCTCCCGGAGCAGATGACTCCGATGTGACAGAGGTGATGTGGCAACCAGCTCTTAGGCGTGGGAGAGGCCTACAGGCCCAAGGATATGGTGTCCGAATCCAGGATGCTGGAGTTTATCTGCTGTATAGCCAGGTCCTGTTTCAAGACGTGACTTTCACCATGGGTCAGGTGGTGTCTCGAGAAGGCCAAGGAAGGCAGGAGACTCTATTCCGATGTATAAGAAGTATGCCCTCCCACCCGGACCGGGCCTACAACAGCTGCTATAGCGCAGGTGTCTTCCATTTACACCAAGGGGATATTCTGAGTGTCATAATTCCCCGGGCAAGGGCGAAACTTAACCTCTCTCCACATGGAACCTTCCTGGGGTTTGTGAAACTGTGATTGTGTTATAAAAAGTGGCTCCCAGCTTGGAAGACCAGGGTGGGTACATACTGGAGACAGCCAAGAGCTGAGTATATAAAGGAGAGGGAATGTGCAGGAACAGAGGCGTCTTCCTGGGTTTGGCTCCCCGTTCCTCACTTTTCCCTTTTCATTCCCACCCCCTAGACTTTGATTTTACGGATATCTTGCTTCTGTTCCCCATGGAGCTCCGAATTCTTGCGTGTGTGTAGATGAGGGGCGGGGGACGGGCGCCAGGCATTGTCCAGACCTGGTCGGGGCCCACTGGAAGCATCCAGAACAGCACCACCATCTAGCGGCCGCTCGAGGGAAGCACCCGCCGGTTGGCCGAAGTCCACGAAGCCGCCCTCTGCTAGGGAAAACCCCTGGTTCTCCATGCCACACCTCTCTCCAGGTGCCCTCTGCCTCTTCACCCCACAAGAAGCCTTATCCTACGTCCTTCTCTCCATCTATCGGACCCCAGTTTCCATCACTATCTCCAGAGATGTAGCTATTATGCGCCCGTCTACAGGGGGTGCCCGACGATGACGGTGCCTTCGCAGTCAAATTACTCTTCGGGTCCCAAGGTTTGGCTTTCACGCGCTCCATTGCCCCGGCGTGGCAGGCCATTCCAAGCCCTTCCGGGCTGGAACTGGTGTCGGAGGAGCCTCGGGTGTATCGTACGCCCTGGTGTTGGTGTTGCCTCACTCCTCTGAGCTCTTCTTTCTGATCAAGCCCTGCTTAAAGTTAAATAAAATAGAATGAATGATACCCCGGC</dnaseq>|
 
sequence = <dnaseq>CCGGAACCCTGTGTGCTGGGGAGGAATCCCGCAGTGGCCGGGGGGCTTGAGGCCGCTGCTTTGTCTCTTCGTCCAGAGCCTTATGTAAGAGCTTTTCTCGGGAAACAGGAAGTCCTGCTTGCCAATTTCAGCACAGGGAGTAGTGCAGGCCTTATTCCAACACACCCGGCCCAGCCTTAACCCCAGAACTCAGCCAGTTTCTTGCTTCCGTGCCCCTGGTTCTCCTCCCCATCGAGCCCACCCCTCCTTTCCCACCTTCAGTCACCCCTAGTGAACTGCCCCAGCGATCTCTGCTGTGCTTGACCCCGAGGGTCTTCCACCCTCGCCCTGACCCTGGACACTGCCCAGCTTGGCCCCCCATCCTGCTCCTGGCACAATGCCCTCTAGCCAGCCAACCTTCCCTCCCCCAACCCTGGGGCCGCCCCAGGGTTCCTGCGCACTGCCTGTTCCTCCTGGGTGTCACTGGCAGCCCTGTCCTTCCTAGAGGGACTGGAACCTAATTCTCCTGAGGCTGAGGGAGGGTGGAGGGTCTCAAGGCAACGCTGGCCCCACGACGGAGTGCCAGGAGCACTAACAGTACCCTTAGCTTGCTTTCCTCCTCCCTCCTTTTTATTTTCAAGTTCCTTTTTATTTCTCCTTGCGTAACAACCTTCTTCCCTTCTGCACCACTGCCCGTACCCTTACCCGCCCCGCCACCTCCTTGCTACCCCACTCTTGAAACCACAGCTGTTGGCAGGGTCCCCAGCTCATGCCAGCCTCATCTCCTTTCTTGCTAGCCCCCAAAGGGCCTCCAGGCAACATGGGGGGCCCAGTCAGAGAGCCGGCACTCTCAGTTGCCCTCTGGTTGAGTTGGGGGGCAGCTCTGGGGGCCGTGGCTTGTGCCATGGCTCTGCTGACCCAACAAACAGAGCTGCAGAGCCTCAGGAGAGAGGTGAGCCGGCTGCAGGGGACAGGAGGCCCCTCCCAGAATGGGGAAGGGTATCCCTGGCAGAGTCTCCCGGAGCAGATGACTCCGATGTGACAGAGGTGATGTGGCAACCAGCTCTTAGGCGTGGGAGAGGCCTACAGGCCCAAGGATATGGTGTCCGAATCCAGGATGCTGGAGTTTATCTGCTGTATAGCCAGGTCCTGTTTCAAGACGTGACTTTCACCATGGGTCAGGTGGTGTCTCGAGAAGGCCAAGGAAGGCAGGAGACTCTATTCCGATGTATAAGAAGTATGCCCTCCCACCCGGACCGGGCCTACAACAGCTGCTATAGCGCAGGTGTCTTCCATTTACACCAAGGGGATATTCTGAGTGTCATAATTCCCCGGGCAAGGGCGAAACTTAACCTCTCTCCACATGGAACCTTCCTGGGGTTTGTGAAACTGTGATTGTGTTATAAAAAGTGGCTCCCAGCTTGGAAGACCAGGGTGGGTACATACTGGAGACAGCCAAGAGCTGAGTATATAAAGGAGAGGGAATGTGCAGGAACAGAGGCGTCTTCCTGGGTTTGGCTCCCCGTTCCTCACTTTTCCCTTTTCATTCCCACCCCCTAGACTTTGATTTTACGGATATCTTGCTTCTGTTCCCCATGGAGCTCCGAATTCTTGCGTGTGTGTAGATGAGGGGCGGGGGACGGGCGCCAGGCATTGTCCAGACCTGGTCGGGGCCCACTGGAAGCATCCAGAACAGCACCACCATCTAGCGGCCGCTCGAGGGAAGCACCCGCCGGTTGGCCGAAGTCCACGAAGCCGCCCTCTGCTAGGGAAAACCCCTGGTTCTCCATGCCACACCTCTCTCCAGGTGCCCTCTGCCTCTTCACCCCACAAGAAGCCTTATCCTACGTCCTTCTCTCCATCTATCGGACCCCAGTTTCCATCACTATCTCCAGAGATGTAGCTATTATGCGCCCGTCTACAGGGGGTGCCCGACGATGACGGTGCCTTCGCAGTCAAATTACTCTTCGGGTCCCAAGGTTTGGCTTTCACGCGCTCCATTGCCCCGGCGTGGCAGGCCATTCCAAGCCCTTCCGGGCTGGAACTGGTGTCGGAGGAGCCTCGGGTGTATCGTACGCCCTGGTGTTGGTGTTGCCTCACTCCTCTGAGCTCTTCTTTCTGATCAAGCCCTGCTTAAAGTTAAATAAAATAGAATGAATGATACCCCGGC</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG020715]][[Category:Transcripts]]

Latest revision as of 03:17, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT145394

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2149 nt

Genomic location

chr17+:7461609..7464925

Exon number

4

Exons

7461609..7462614,7463366..7463484,7463667..7463805,7464041..7464925

Genome context

Sequence
000001 CCGGAACCCT GTGTGCTGGG GAGGAATCCC GCAGTGGCCG GGGGGCTTGA GGCCGCTGCT TTGTCTCTTC GTCCAGAGCC 000080
000081 TTATGTAAGA GCTTTTCTCG GGAAACAGGA AGTCCTGCTT GCCAATTTCA GCACAGGGAG TAGTGCAGGC CTTATTCCAA 000160
000161 CACACCCGGC CCAGCCTTAA CCCCAGAACT CAGCCAGTTT CTTGCTTCCG TGCCCCTGGT TCTCCTCCCC ATCGAGCCCA 000240
000241 CCCCTCCTTT CCCACCTTCA GTCACCCCTA GTGAACTGCC CCAGCGATCT CTGCTGTGCT TGACCCCGAG GGTCTTCCAC 000320
000321 CCTCGCCCTG ACCCTGGACA CTGCCCAGCT TGGCCCCCCA TCCTGCTCCT GGCACAATGC CCTCTAGCCA GCCAACCTTC 000400
000401 CCTCCCCCAA CCCTGGGGCC GCCCCAGGGT TCCTGCGCAC TGCCTGTTCC TCCTGGGTGT CACTGGCAGC CCTGTCCTTC 000480
000481 CTAGAGGGAC TGGAACCTAA TTCTCCTGAG GCTGAGGGAG GGTGGAGGGT CTCAAGGCAA CGCTGGCCCC ACGACGGAGT 000560
000561 GCCAGGAGCA CTAACAGTAC CCTTAGCTTG CTTTCCTCCT CCCTCCTTTT TATTTTCAAG TTCCTTTTTA TTTCTCCTTG 000640
000641 CGTAACAACC TTCTTCCCTT CTGCACCACT GCCCGTACCC TTACCCGCCC CGCCACCTCC TTGCTACCCC ACTCTTGAAA 000720
000721 CCACAGCTGT TGGCAGGGTC CCCAGCTCAT GCCAGCCTCA TCTCCTTTCT TGCTAGCCCC CAAAGGGCCT CCAGGCAACA 000800
000801 TGGGGGGCCC AGTCAGAGAG CCGGCACTCT CAGTTGCCCT CTGGTTGAGT TGGGGGGCAG CTCTGGGGGC CGTGGCTTGT 000880
000881 GCCATGGCTC TGCTGACCCA ACAAACAGAG CTGCAGAGCC TCAGGAGAGA GGTGAGCCGG CTGCAGGGGA CAGGAGGCCC 000960
000961 CTCCCAGAAT GGGGAAGGGT ATCCCTGGCA GAGTCTCCCG GAGCAGATGA CTCCGATGTG ACAGAGGTGA TGTGGCAACC 001040
001041 AGCTCTTAGG CGTGGGAGAG GCCTACAGGC CCAAGGATAT GGTGTCCGAA TCCAGGATGC TGGAGTTTAT CTGCTGTATA 001120
001121 GCCAGGTCCT GTTTCAAGAC GTGACTTTCA CCATGGGTCA GGTGGTGTCT CGAGAAGGCC AAGGAAGGCA GGAGACTCTA 001200
001201 TTCCGATGTA TAAGAAGTAT GCCCTCCCAC CCGGACCGGG CCTACAACAG CTGCTATAGC GCAGGTGTCT TCCATTTACA 001280
001281 CCAAGGGGAT ATTCTGAGTG TCATAATTCC CCGGGCAAGG GCGAAACTTA ACCTCTCTCC ACATGGAACC TTCCTGGGGT 001360
001361 TTGTGAAACT GTGATTGTGT TATAAAAAGT GGCTCCCAGC TTGGAAGACC AGGGTGGGTA CATACTGGAG ACAGCCAAGA 001440
001441 GCTGAGTATA TAAAGGAGAG GGAATGTGCA GGAACAGAGG CGTCTTCCTG GGTTTGGCTC CCCGTTCCTC ACTTTTCCCT 001520
001521 TTTCATTCCC ACCCCCTAGA CTTTGATTTT ACGGATATCT TGCTTCTGTT CCCCATGGAG CTCCGAATTC TTGCGTGTGT 001600
001601 GTAGATGAGG GGCGGGGGAC GGGCGCCAGG CATTGTCCAG ACCTGGTCGG GGCCCACTGG AAGCATCCAG AACAGCACCA 001680
001681 CCATCTAGCG GCCGCTCGAG GGAAGCACCC GCCGGTTGGC CGAAGTCCAC GAAGCCGCCC TCTGCTAGGG AAAACCCCTG 001760
001761 GTTCTCCATG CCACACCTCT CTCCAGGTGC CCTCTGCCTC TTCACCCCAC AAGAAGCCTT ATCCTACGTC CTTCTCTCCA 001840
001841 TCTATCGGAC CCCAGTTTCC ATCACTATCT CCAGAGATGT AGCTATTATG CGCCCGTCTA CAGGGGGTGC CCGACGATGA 001920
001921 CGGTGCCTTC GCAGTCAAAT TACTCTTCGG GTCCCAAGGT TTGGCTTTCA CGCGCTCCAT TGCCCCGGCG TGGCAGGCCA 002000
002001 TTCCAAGCCC TTCCGGGCTG GAACTGGTGT CGGAGGAGCC TCGGGTGTAT CGTACGCCCT GGTGTTGGTG TTGCCTCACT 002080
002081 CCTCTGAGCT CTTCTTTCTG ATCAAGCCCT GCTTAAAGTT AAATAAAATA GAATGAATGA TACCCCGGC
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Predicted Small Protein

Name NONHSAT145394_smProtein_1916:2086
Length 57
Molecular weight 6164.1607
Aromaticity 0.0892857142857
Instability index 80.6375
Isoelectric point 11.8822631836
Runs 9
Runs residual 0.00741608118657
Runs probability 0.0293921372353
Amino acid sequence MTVPSQSNYSSGPKVWLSRAPLPRRGRPFQALPGWNWCRRSLGCIVRPGVGVASLL
Secondary structure LLLLLLLLLLLLLEEEEELLLLLLLLLLLLLLLLLLHHHLLLLEEEELLLLEEEEL
PRMN -
PiMo -