Difference between revisions of "NONHSAT146018"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>ttgttctcacttaatacatgagaaaatgcaatatttggctgtttttgcgttaattcacgtaggataatgaccttcagctgcatctgtgttgctgcaaaggacatgattttgttcttttttatgactgcctagtactttgtggtgtatatgcaccacattttctttatttaatgaaccgttggtggatacttaccttggttccatgaccttgctgttaagttgaactaattgacacctaccaCCGCTTGCTGGAGGTTGAGGACGCCCAGTGAGTGTGCACCCGGGCTGGAGAAGGGAGGAGGTATGGCCCGGAAAAGAGACACAGAAAGGTAAtccaagagggctttctggaggaggtggcagctgagcctagaggtgaaTTTCATTGGGGAAGAGGGAGTGAGGCCTAGGCAGCTTAGGCCATGACCCCCATGGTGGGAGACGGCTGCATAAGGGTCTCTCTCCTGGCATCCATCTTTACCCATGCCTGGGCATCCTACCCCCATCACCCTTTAACCCCCGAGGGCCTTGGCTGGGTCCCAGAAATTCCCAGGAGGGTGCTCAGAGAAGACCACGGGGACTCTCATCACCCCCACCCTGGCTCACTTCCAAAAAGGCTGCAAGAAGGGTGTTGGAGGGTCTCCTGGAGGCTGCCAAGGGCATTTTCTCATGGAGCCCACGTCTCTCCCCGATCGTGGTGGCTGTGATCGGTAATTCCAGCTTCATACTGGCTACAGGTGGATGATGCCCACCTGGCTGCTGATGACTTCTGCACCAAGTGAGGCTGGGTCTCTGGAGCTGCCCCAGGGGCTGGACAAGCTGACCCTGCCTGGAGCCAACCTGGAGATGCAGCCTGAGAACCTCAAGGAGGACCTGGTCTACCTGAAGAAGAACCATGAGGAGGAAATGAACGCCCTTTGAGGTCAGGTGGACGAGGATGTCAGTGTGAAGATGGACACTGTGCCTGGAGTGAACCTGAGCTGCATCCTGAATGAGATGCGTGACCAGGACAAGAAACTGGTGGAGAAGAGCTGCAAGGATGCCCAGGGCTGGTTCTTCAGCGTGGTGGGTGGCCGTGTGTAAGCAGGTGTGCACACGTGTGGGCACATACGCCGTGTGCTGGTGCAGTTGGAACACCGGCagattcacaggctgtcccagttggaaggacttttggaaaccagtcggaccagcccttcatgtcttcgatgtaaaatgtgaggctcagagaggactcaagctcacacagcccttcactgtggcctgcaaaatagatccagttctcTGCAAGTCTGGTCTTGGGTTTCCACCACAGCTGTTTACAGGATGTGTGTATTTGAGTACATACAcatacccttggcaagcacaggctgagtgtgtccggtgtcctagggacagcaacaggtgcaaaagaataacacccagtgcctgtctttgaggtgctgtagttcggtaggagtaagaaatgcaaacGACCGCAGAGTAGGCTGAATTCCTCCAAGGTCCAACGTGGGTGCAGAGGGTCTTTGTGTGCAGGTGCCTTTGGGGCCCCATAGAGGCCAGGGAGGGTTTAGGGGATGGTTCTGGGAGGCGAGGGCTCAGGAACAGCCCCTTTCCTGTGCCCCACTTGTGAAAGTCTCCATAAACCCCTGTGGCCCACTCTGCCTTCCAGAGAGAGAGGCTGAACTGCGAGGTGGCCACCAACACAGAGGCCCTGCAGAGCGGCAGGATGGAGATATGGAGCTCTACATCTCTGTGCAGAACCTGAGCCGTCCCAGCTCAGCAAGAAAGCATCGCTGGAGGGCAGCCTGGTGGAGACGGAGGTGTGTTACAGGACCCAGCTGGCCCAGCTGCAGGGGCTCATCAGAAGCATGGAACAGCAGCTGTGCGAGCTCTGCTGTGATGCAGAGCACCAGGACCACGAGCACCAGGTCCTTCTGGACGTGAAGACGCGGCTGGAGCAGGAGATCGCCACCTACAGCCGCTTGCTAGAGGTTGAGGACGCCCGGTGAGTGTGCACCCAGgaggtgaaactgacgatgcaggctggagtctgactgaggagccttgactgccaagttaaagcgtctggactagatcacGGGAACCTCCTCTGCCAGGGCCTGCTTCTCCCCAGCAGTGCTTACAGGGGCCTGGGCTGGCTGGCATCCCTGGGTCGATGGGTGCTCCTCTCCCTGCAGGCTGGCCACTCAGTACTCCTTGTCCCTGGCCTCGCAGCCCACCCGGGAAGCCACGGTGACCAGCCACCAGGTGTGCCATCGTGGAGGAAGTCCAGGTTGGAGAGGTGGTCTTCTGTAAGCAGGTCCATCTCTCCACCCACTGAGGCCCCTTTCTGCCTGTGACAGCCCCACCTCGAGGGTCACGGCACAGCCATCAGCTCCAGCTCCCAGCATGCTACTGCCACGCCCCGAGTGTCCGTCTGGGCACTGGTCCATGACCTGTTGTCTTTCTGTATCTACTTTCTGCAGCCCCTCACTGAGGAGGCCTCCTGGGTTTGTCCAGTGCCTGCTATTAAAGCTTTGCTCCAAGTTCAA</dnaseq>| | sequence = <dnaseq>ttgttctcacttaatacatgagaaaatgcaatatttggctgtttttgcgttaattcacgtaggataatgaccttcagctgcatctgtgttgctgcaaaggacatgattttgttcttttttatgactgcctagtactttgtggtgtatatgcaccacattttctttatttaatgaaccgttggtggatacttaccttggttccatgaccttgctgttaagttgaactaattgacacctaccaCCGCTTGCTGGAGGTTGAGGACGCCCAGTGAGTGTGCACCCGGGCTGGAGAAGGGAGGAGGTATGGCCCGGAAAAGAGACACAGAAAGGTAAtccaagagggctttctggaggaggtggcagctgagcctagaggtgaaTTTCATTGGGGAAGAGGGAGTGAGGCCTAGGCAGCTTAGGCCATGACCCCCATGGTGGGAGACGGCTGCATAAGGGTCTCTCTCCTGGCATCCATCTTTACCCATGCCTGGGCATCCTACCCCCATCACCCTTTAACCCCCGAGGGCCTTGGCTGGGTCCCAGAAATTCCCAGGAGGGTGCTCAGAGAAGACCACGGGGACTCTCATCACCCCCACCCTGGCTCACTTCCAAAAAGGCTGCAAGAAGGGTGTTGGAGGGTCTCCTGGAGGCTGCCAAGGGCATTTTCTCATGGAGCCCACGTCTCTCCCCGATCGTGGTGGCTGTGATCGGTAATTCCAGCTTCATACTGGCTACAGGTGGATGATGCCCACCTGGCTGCTGATGACTTCTGCACCAAGTGAGGCTGGGTCTCTGGAGCTGCCCCAGGGGCTGGACAAGCTGACCCTGCCTGGAGCCAACCTGGAGATGCAGCCTGAGAACCTCAAGGAGGACCTGGTCTACCTGAAGAAGAACCATGAGGAGGAAATGAACGCCCTTTGAGGTCAGGTGGACGAGGATGTCAGTGTGAAGATGGACACTGTGCCTGGAGTGAACCTGAGCTGCATCCTGAATGAGATGCGTGACCAGGACAAGAAACTGGTGGAGAAGAGCTGCAAGGATGCCCAGGGCTGGTTCTTCAGCGTGGTGGGTGGCCGTGTGTAAGCAGGTGTGCACACGTGTGGGCACATACGCCGTGTGCTGGTGCAGTTGGAACACCGGCagattcacaggctgtcccagttggaaggacttttggaaaccagtcggaccagcccttcatgtcttcgatgtaaaatgtgaggctcagagaggactcaagctcacacagcccttcactgtggcctgcaaaatagatccagttctcTGCAAGTCTGGTCTTGGGTTTCCACCACAGCTGTTTACAGGATGTGTGTATTTGAGTACATACAcatacccttggcaagcacaggctgagtgtgtccggtgtcctagggacagcaacaggtgcaaaagaataacacccagtgcctgtctttgaggtgctgtagttcggtaggagtaagaaatgcaaacGACCGCAGAGTAGGCTGAATTCCTCCAAGGTCCAACGTGGGTGCAGAGGGTCTTTGTGTGCAGGTGCCTTTGGGGCCCCATAGAGGCCAGGGAGGGTTTAGGGGATGGTTCTGGGAGGCGAGGGCTCAGGAACAGCCCCTTTCCTGTGCCCCACTTGTGAAAGTCTCCATAAACCCCTGTGGCCCACTCTGCCTTCCAGAGAGAGAGGCTGAACTGCGAGGTGGCCACCAACACAGAGGCCCTGCAGAGCGGCAGGATGGAGATATGGAGCTCTACATCTCTGTGCAGAACCTGAGCCGTCCCAGCTCAGCAAGAAAGCATCGCTGGAGGGCAGCCTGGTGGAGACGGAGGTGTGTTACAGGACCCAGCTGGCCCAGCTGCAGGGGCTCATCAGAAGCATGGAACAGCAGCTGTGCGAGCTCTGCTGTGATGCAGAGCACCAGGACCACGAGCACCAGGTCCTTCTGGACGTGAAGACGCGGCTGGAGCAGGAGATCGCCACCTACAGCCGCTTGCTAGAGGTTGAGGACGCCCGGTGAGTGTGCACCCAGgaggtgaaactgacgatgcaggctggagtctgactgaggagccttgactgccaagttaaagcgtctggactagatcacGGGAACCTCCTCTGCCAGGGCCTGCTTCTCCCCAGCAGTGCTTACAGGGGCCTGGGCTGGCTGGCATCCCTGGGTCGATGGGTGCTCCTCTCCCTGCAGGCTGGCCACTCAGTACTCCTTGTCCCTGGCCTCGCAGCCCACCCGGGAAGCCACGGTGACCAGCCACCAGGTGTGCCATCGTGGAGGAAGTCCAGGTTGGAGAGGTGGTCTTCTGTAAGCAGGTCCATCTCTCCACCCACTGAGGCCCCTTTCTGCCTGTGACAGCCCCACCTCGAGGGTCACGGCACAGCCATCAGCTCCAGCTCCCAGCATGCTACTGCCACGCCCCGAGTGTCCGTCTGGGCACTGGTCCATGACCTGTTGTCTTTCTGTATCTACTTTCTGCAGCCCCTCACTGAGGAGGCCTCCTGGGTTTGTCCAGTGCCTGCTATTAAAGCTTTGCTCCAAGTTCAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG020982]][[Category:Transcripts]] |
Latest revision as of 03:20, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
Please input regulation information here.
Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT146018 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2555 nt |
Genomic location |
chr17-:16750949..16756090 |
Exon number |
7 |
Exons |
16750949..16751252,16751411..16751559,16752314..16752391,16752499..16752735,16752984..16753867,16755039..16755725,16755875..16756090 |
Genome context |
|
Sequence |
000001 ttgttctcac ttaatacatg agaaaatgca atatttggct gtttttgcgt taattcacgt aggataatga ccttcagctg 000080
000081 catctgtgtt gctgcaaagg acatgatttt gttctttttt atgactgcct agtactttgt ggtgtatatg caccacattt 000160 000161 tctttattta atgaaccgtt ggtggatact taccttggtt ccatgacctt gctgttaagt tgaactaatt gacacctacc 000240 000241 aCCGCTTGCT GGAGGTTGAG GACGCCCAGT GAGTGTGCAC CCGGGCTGGA GAAGGGAGGA GGTATGGCCC GGAAAAGAGA 000320 000321 CACAGAAAGG TAAtccaaga gggctttctg gaggaggtgg cagctgagcc tagaggtgaa TTTCATTGGG GAAGAGGGAG 000400 000401 TGAGGCCTAG GCAGCTTAGG CCATGACCCC CATGGTGGGA GACGGCTGCA TAAGGGTCTC TCTCCTGGCA TCCATCTTTA 000480 000481 CCCATGCCTG GGCATCCTAC CCCCATCACC CTTTAACCCC CGAGGGCCTT GGCTGGGTCC CAGAAATTCC CAGGAGGGTG 000560 000561 CTCAGAGAAG ACCACGGGGA CTCTCATCAC CCCCACCCTG GCTCACTTCC AAAAAGGCTG CAAGAAGGGT GTTGGAGGGT 000640 000641 CTCCTGGAGG CTGCCAAGGG CATTTTCTCA TGGAGCCCAC GTCTCTCCCC GATCGTGGTG GCTGTGATCG GTAATTCCAG 000720 000721 CTTCATACTG GCTACAGGTG GATGATGCCC ACCTGGCTGC TGATGACTTC TGCACCAAGT GAGGCTGGGT CTCTGGAGCT 000800 000801 GCCCCAGGGG CTGGACAAGC TGACCCTGCC TGGAGCCAAC CTGGAGATGC AGCCTGAGAA CCTCAAGGAG GACCTGGTCT 000880 000881 ACCTGAAGAA GAACCATGAG GAGGAAATGA ACGCCCTTTG AGGTCAGGTG GACGAGGATG TCAGTGTGAA GATGGACACT 000960 000961 GTGCCTGGAG TGAACCTGAG CTGCATCCTG AATGAGATGC GTGACCAGGA CAAGAAACTG GTGGAGAAGA GCTGCAAGGA 001040 001041 TGCCCAGGGC TGGTTCTTCA GCGTGGTGGG TGGCCGTGTG TAAGCAGGTG TGCACACGTG TGGGCACATA CGCCGTGTGC 001120 001121 TGGTGCAGTT GGAACACCGG Cagattcaca ggctgtccca gttggaagga cttttggaaa ccagtcggac cagcccttca 001200 001201 tgtcttcgat gtaaaatgtg aggctcagag aggactcaag ctcacacagc ccttcactgt ggcctgcaaa atagatccag 001280 001281 ttctcTGCAA GTCTGGTCTT GGGTTTCCAC CACAGCTGTT TACAGGATGT GTGTATTTGA GTACATACAc atacccttgg 001360 001361 caagcacagg ctgagtgtgt ccggtgtcct agggacagca acaggtgcaa aagaataaca cccagtgcct gtctttgagg 001440 001441 tgctgtagtt cggtaggagt aagaaatgca aacGACCGCA GAGTAGGCTG AATTCCTCCA AGGTCCAACG TGGGTGCAGA 001520 001521 GGGTCTTTGT GTGCAGGTGC CTTTGGGGCC CCATAGAGGC CAGGGAGGGT TTAGGGGATG GTTCTGGGAG GCGAGGGCTC 001600 001601 AGGAACAGCC CCTTTCCTGT GCCCCACTTG TGAAAGTCTC CATAAACCCC TGTGGCCCAC TCTGCCTTCC AGAGAGAGAG 001680 001681 GCTGAACTGC GAGGTGGCCA CCAACACAGA GGCCCTGCAG AGCGGCAGGA TGGAGATATG GAGCTCTACA TCTCTGTGCA 001760 001761 GAACCTGAGC CGTCCCAGCT CAGCAAGAAA GCATCGCTGG AGGGCAGCCT GGTGGAGACG GAGGTGTGTT ACAGGACCCA 001840 001841 GCTGGCCCAG CTGCAGGGGC TCATCAGAAG CATGGAACAG CAGCTGTGCG AGCTCTGCTG TGATGCAGAG CACCAGGACC 001920 001921 ACGAGCACCA GGTCCTTCTG GACGTGAAGA CGCGGCTGGA GCAGGAGATC GCCACCTACA GCCGCTTGCT AGAGGTTGAG 002000 002001 GACGCCCGGT GAGTGTGCAC CCAGgaggtg aaactgacga tgcaggctgg agtctgactg aggagccttg actgccaagt 002080 002081 taaagcgtct ggactagatc acGGGAACCT CCTCTGCCAG GGCCTGCTTC TCCCCAGCAG TGCTTACAGG GGCCTGGGCT 002160 002161 GGCTGGCATC CCTGGGTCGA TGGGTGCTCC TCTCCCTGCA GGCTGGCCAC TCAGTACTCC TTGTCCCTGG CCTCGCAGCC 002240 002241 CACCCGGGAA GCCACGGTGA CCAGCCACCA GGTGTGCCAT CGTGGAGGAA GTCCAGGTTG GAGAGGTGGT CTTCTGTAAG 002320 002321 CAGGTCCATC TCTCCACCCA CTGAGGCCCC TTTCTGCCTG TGACAGCCCC ACCTCGAGGG TCACGGCACA GCCATCAGCT 002400 002401 CCAGCTCCCA GCATGCTACT GCCACGCCCC GAGTGTCCGT CTGGGCACTG GTCCATGACC TGTTGTCTTT CTGTATCTAC 002480 002481 TTTCTGCAGC CCCTCACTGA GGAGGCCTCC TGGGTTTGTC CAGTGCCTGC TATTAAAGCT TTGCTCCAAG TTCAA |
Predicted Small Protein
Name | NONHSAT146018_smProtein_422:706 |
Length | 95 |
Molecular weight | 10739.1697 |
Aromaticity | 0.0957446808511 |
Instability index | 46.6606382979 |
Isoelectric point | 9.48724365234 |
Runs | 12 |
Runs residual | 0.00115633672525 |
Runs probability | 0.0357857857858 |
Amino acid sequence | MTPMVGDGCIRVSLLASIFTHAWASYPHHPLTPEGLGWVPEIPRRVLREDHGDSHHPHPG SLPKRLQEGCWRVSWRLPRAFSHGAHVSPRSWWL |
Secondary structure | LLLLLLLLEEEHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLHHHHHLLLLLLLLLLLL LLHHHHHHLLEEEEEELLLLLLLLLLLLLLLEEL |
PRMN | - |
PiMo | - |