Difference between revisions of "NONHSAT146018"

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sequence = <dnaseq>ttgttctcacttaatacatgagaaaatgcaatatttggctgtttttgcgttaattcacgtaggataatgaccttcagctgcatctgtgttgctgcaaaggacatgattttgttcttttttatgactgcctagtactttgtggtgtatatgcaccacattttctttatttaatgaaccgttggtggatacttaccttggttccatgaccttgctgttaagttgaactaattgacacctaccaCCGCTTGCTGGAGGTTGAGGACGCCCAGTGAGTGTGCACCCGGGCTGGAGAAGGGAGGAGGTATGGCCCGGAAAAGAGACACAGAAAGGTAAtccaagagggctttctggaggaggtggcagctgagcctagaggtgaaTTTCATTGGGGAAGAGGGAGTGAGGCCTAGGCAGCTTAGGCCATGACCCCCATGGTGGGAGACGGCTGCATAAGGGTCTCTCTCCTGGCATCCATCTTTACCCATGCCTGGGCATCCTACCCCCATCACCCTTTAACCCCCGAGGGCCTTGGCTGGGTCCCAGAAATTCCCAGGAGGGTGCTCAGAGAAGACCACGGGGACTCTCATCACCCCCACCCTGGCTCACTTCCAAAAAGGCTGCAAGAAGGGTGTTGGAGGGTCTCCTGGAGGCTGCCAAGGGCATTTTCTCATGGAGCCCACGTCTCTCCCCGATCGTGGTGGCTGTGATCGGTAATTCCAGCTTCATACTGGCTACAGGTGGATGATGCCCACCTGGCTGCTGATGACTTCTGCACCAAGTGAGGCTGGGTCTCTGGAGCTGCCCCAGGGGCTGGACAAGCTGACCCTGCCTGGAGCCAACCTGGAGATGCAGCCTGAGAACCTCAAGGAGGACCTGGTCTACCTGAAGAAGAACCATGAGGAGGAAATGAACGCCCTTTGAGGTCAGGTGGACGAGGATGTCAGTGTGAAGATGGACACTGTGCCTGGAGTGAACCTGAGCTGCATCCTGAATGAGATGCGTGACCAGGACAAGAAACTGGTGGAGAAGAGCTGCAAGGATGCCCAGGGCTGGTTCTTCAGCGTGGTGGGTGGCCGTGTGTAAGCAGGTGTGCACACGTGTGGGCACATACGCCGTGTGCTGGTGCAGTTGGAACACCGGCagattcacaggctgtcccagttggaaggacttttggaaaccagtcggaccagcccttcatgtcttcgatgtaaaatgtgaggctcagagaggactcaagctcacacagcccttcactgtggcctgcaaaatagatccagttctcTGCAAGTCTGGTCTTGGGTTTCCACCACAGCTGTTTACAGGATGTGTGTATTTGAGTACATACAcatacccttggcaagcacaggctgagtgtgtccggtgtcctagggacagcaacaggtgcaaaagaataacacccagtgcctgtctttgaggtgctgtagttcggtaggagtaagaaatgcaaacGACCGCAGAGTAGGCTGAATTCCTCCAAGGTCCAACGTGGGTGCAGAGGGTCTTTGTGTGCAGGTGCCTTTGGGGCCCCATAGAGGCCAGGGAGGGTTTAGGGGATGGTTCTGGGAGGCGAGGGCTCAGGAACAGCCCCTTTCCTGTGCCCCACTTGTGAAAGTCTCCATAAACCCCTGTGGCCCACTCTGCCTTCCAGAGAGAGAGGCTGAACTGCGAGGTGGCCACCAACACAGAGGCCCTGCAGAGCGGCAGGATGGAGATATGGAGCTCTACATCTCTGTGCAGAACCTGAGCCGTCCCAGCTCAGCAAGAAAGCATCGCTGGAGGGCAGCCTGGTGGAGACGGAGGTGTGTTACAGGACCCAGCTGGCCCAGCTGCAGGGGCTCATCAGAAGCATGGAACAGCAGCTGTGCGAGCTCTGCTGTGATGCAGAGCACCAGGACCACGAGCACCAGGTCCTTCTGGACGTGAAGACGCGGCTGGAGCAGGAGATCGCCACCTACAGCCGCTTGCTAGAGGTTGAGGACGCCCGGTGAGTGTGCACCCAGgaggtgaaactgacgatgcaggctggagtctgactgaggagccttgactgccaagttaaagcgtctggactagatcacGGGAACCTCCTCTGCCAGGGCCTGCTTCTCCCCAGCAGTGCTTACAGGGGCCTGGGCTGGCTGGCATCCCTGGGTCGATGGGTGCTCCTCTCCCTGCAGGCTGGCCACTCAGTACTCCTTGTCCCTGGCCTCGCAGCCCACCCGGGAAGCCACGGTGACCAGCCACCAGGTGTGCCATCGTGGAGGAAGTCCAGGTTGGAGAGGTGGTCTTCTGTAAGCAGGTCCATCTCTCCACCCACTGAGGCCCCTTTCTGCCTGTGACAGCCCCACCTCGAGGGTCACGGCACAGCCATCAGCTCCAGCTCCCAGCATGCTACTGCCACGCCCCGAGTGTCCGTCTGGGCACTGGTCCATGACCTGTTGTCTTTCTGTATCTACTTTCTGCAGCCCCTCACTGAGGAGGCCTCCTGGGTTTGTCCAGTGCCTGCTATTAAAGCTTTGCTCCAAGTTCAA</dnaseq>|
 
sequence = <dnaseq>ttgttctcacttaatacatgagaaaatgcaatatttggctgtttttgcgttaattcacgtaggataatgaccttcagctgcatctgtgttgctgcaaaggacatgattttgttcttttttatgactgcctagtactttgtggtgtatatgcaccacattttctttatttaatgaaccgttggtggatacttaccttggttccatgaccttgctgttaagttgaactaattgacacctaccaCCGCTTGCTGGAGGTTGAGGACGCCCAGTGAGTGTGCACCCGGGCTGGAGAAGGGAGGAGGTATGGCCCGGAAAAGAGACACAGAAAGGTAAtccaagagggctttctggaggaggtggcagctgagcctagaggtgaaTTTCATTGGGGAAGAGGGAGTGAGGCCTAGGCAGCTTAGGCCATGACCCCCATGGTGGGAGACGGCTGCATAAGGGTCTCTCTCCTGGCATCCATCTTTACCCATGCCTGGGCATCCTACCCCCATCACCCTTTAACCCCCGAGGGCCTTGGCTGGGTCCCAGAAATTCCCAGGAGGGTGCTCAGAGAAGACCACGGGGACTCTCATCACCCCCACCCTGGCTCACTTCCAAAAAGGCTGCAAGAAGGGTGTTGGAGGGTCTCCTGGAGGCTGCCAAGGGCATTTTCTCATGGAGCCCACGTCTCTCCCCGATCGTGGTGGCTGTGATCGGTAATTCCAGCTTCATACTGGCTACAGGTGGATGATGCCCACCTGGCTGCTGATGACTTCTGCACCAAGTGAGGCTGGGTCTCTGGAGCTGCCCCAGGGGCTGGACAAGCTGACCCTGCCTGGAGCCAACCTGGAGATGCAGCCTGAGAACCTCAAGGAGGACCTGGTCTACCTGAAGAAGAACCATGAGGAGGAAATGAACGCCCTTTGAGGTCAGGTGGACGAGGATGTCAGTGTGAAGATGGACACTGTGCCTGGAGTGAACCTGAGCTGCATCCTGAATGAGATGCGTGACCAGGACAAGAAACTGGTGGAGAAGAGCTGCAAGGATGCCCAGGGCTGGTTCTTCAGCGTGGTGGGTGGCCGTGTGTAAGCAGGTGTGCACACGTGTGGGCACATACGCCGTGTGCTGGTGCAGTTGGAACACCGGCagattcacaggctgtcccagttggaaggacttttggaaaccagtcggaccagcccttcatgtcttcgatgtaaaatgtgaggctcagagaggactcaagctcacacagcccttcactgtggcctgcaaaatagatccagttctcTGCAAGTCTGGTCTTGGGTTTCCACCACAGCTGTTTACAGGATGTGTGTATTTGAGTACATACAcatacccttggcaagcacaggctgagtgtgtccggtgtcctagggacagcaacaggtgcaaaagaataacacccagtgcctgtctttgaggtgctgtagttcggtaggagtaagaaatgcaaacGACCGCAGAGTAGGCTGAATTCCTCCAAGGTCCAACGTGGGTGCAGAGGGTCTTTGTGTGCAGGTGCCTTTGGGGCCCCATAGAGGCCAGGGAGGGTTTAGGGGATGGTTCTGGGAGGCGAGGGCTCAGGAACAGCCCCTTTCCTGTGCCCCACTTGTGAAAGTCTCCATAAACCCCTGTGGCCCACTCTGCCTTCCAGAGAGAGAGGCTGAACTGCGAGGTGGCCACCAACACAGAGGCCCTGCAGAGCGGCAGGATGGAGATATGGAGCTCTACATCTCTGTGCAGAACCTGAGCCGTCCCAGCTCAGCAAGAAAGCATCGCTGGAGGGCAGCCTGGTGGAGACGGAGGTGTGTTACAGGACCCAGCTGGCCCAGCTGCAGGGGCTCATCAGAAGCATGGAACAGCAGCTGTGCGAGCTCTGCTGTGATGCAGAGCACCAGGACCACGAGCACCAGGTCCTTCTGGACGTGAAGACGCGGCTGGAGCAGGAGATCGCCACCTACAGCCGCTTGCTAGAGGTTGAGGACGCCCGGTGAGTGTGCACCCAGgaggtgaaactgacgatgcaggctggagtctgactgaggagccttgactgccaagttaaagcgtctggactagatcacGGGAACCTCCTCTGCCAGGGCCTGCTTCTCCCCAGCAGTGCTTACAGGGGCCTGGGCTGGCTGGCATCCCTGGGTCGATGGGTGCTCCTCTCCCTGCAGGCTGGCCACTCAGTACTCCTTGTCCCTGGCCTCGCAGCCCACCCGGGAAGCCACGGTGACCAGCCACCAGGTGTGCCATCGTGGAGGAAGTCCAGGTTGGAGAGGTGGTCTTCTGTAAGCAGGTCCATCTCTCCACCCACTGAGGCCCCTTTCTGCCTGTGACAGCCCCACCTCGAGGGTCACGGCACAGCCATCAGCTCCAGCTCCCAGCATGCTACTGCCACGCCCCGAGTGTCCGTCTGGGCACTGGTCCATGACCTGTTGTCTTTCTGTATCTACTTTCTGCAGCCCCTCACTGAGGAGGCCTCCTGGGTTTGTCCAGTGCCTGCTATTAAAGCTTTGCTCCAAGTTCAA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG020982]][[Category:Transcripts]]

Latest revision as of 03:20, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT146018

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2555 nt

Genomic location

chr17-:16750949..16756090

Exon number

7

Exons

16750949..16751252,16751411..16751559,16752314..16752391,16752499..16752735,16752984..16753867,16755039..16755725,16755875..16756090

Genome context

Sequence
000001 ttgttctcac ttaatacatg agaaaatgca atatttggct gtttttgcgt taattcacgt aggataatga ccttcagctg 000080
000081 catctgtgtt gctgcaaagg acatgatttt gttctttttt atgactgcct agtactttgt ggtgtatatg caccacattt 000160
000161 tctttattta atgaaccgtt ggtggatact taccttggtt ccatgacctt gctgttaagt tgaactaatt gacacctacc 000240
000241 aCCGCTTGCT GGAGGTTGAG GACGCCCAGT GAGTGTGCAC CCGGGCTGGA GAAGGGAGGA GGTATGGCCC GGAAAAGAGA 000320
000321 CACAGAAAGG TAAtccaaga gggctttctg gaggaggtgg cagctgagcc tagaggtgaa TTTCATTGGG GAAGAGGGAG 000400
000401 TGAGGCCTAG GCAGCTTAGG CCATGACCCC CATGGTGGGA GACGGCTGCA TAAGGGTCTC TCTCCTGGCA TCCATCTTTA 000480
000481 CCCATGCCTG GGCATCCTAC CCCCATCACC CTTTAACCCC CGAGGGCCTT GGCTGGGTCC CAGAAATTCC CAGGAGGGTG 000560
000561 CTCAGAGAAG ACCACGGGGA CTCTCATCAC CCCCACCCTG GCTCACTTCC AAAAAGGCTG CAAGAAGGGT GTTGGAGGGT 000640
000641 CTCCTGGAGG CTGCCAAGGG CATTTTCTCA TGGAGCCCAC GTCTCTCCCC GATCGTGGTG GCTGTGATCG GTAATTCCAG 000720
000721 CTTCATACTG GCTACAGGTG GATGATGCCC ACCTGGCTGC TGATGACTTC TGCACCAAGT GAGGCTGGGT CTCTGGAGCT 000800
000801 GCCCCAGGGG CTGGACAAGC TGACCCTGCC TGGAGCCAAC CTGGAGATGC AGCCTGAGAA CCTCAAGGAG GACCTGGTCT 000880
000881 ACCTGAAGAA GAACCATGAG GAGGAAATGA ACGCCCTTTG AGGTCAGGTG GACGAGGATG TCAGTGTGAA GATGGACACT 000960
000961 GTGCCTGGAG TGAACCTGAG CTGCATCCTG AATGAGATGC GTGACCAGGA CAAGAAACTG GTGGAGAAGA GCTGCAAGGA 001040
001041 TGCCCAGGGC TGGTTCTTCA GCGTGGTGGG TGGCCGTGTG TAAGCAGGTG TGCACACGTG TGGGCACATA CGCCGTGTGC 001120
001121 TGGTGCAGTT GGAACACCGG Cagattcaca ggctgtccca gttggaagga cttttggaaa ccagtcggac cagcccttca 001200
001201 tgtcttcgat gtaaaatgtg aggctcagag aggactcaag ctcacacagc ccttcactgt ggcctgcaaa atagatccag 001280
001281 ttctcTGCAA GTCTGGTCTT GGGTTTCCAC CACAGCTGTT TACAGGATGT GTGTATTTGA GTACATACAc atacccttgg 001360
001361 caagcacagg ctgagtgtgt ccggtgtcct agggacagca acaggtgcaa aagaataaca cccagtgcct gtctttgagg 001440
001441 tgctgtagtt cggtaggagt aagaaatgca aacGACCGCA GAGTAGGCTG AATTCCTCCA AGGTCCAACG TGGGTGCAGA 001520
001521 GGGTCTTTGT GTGCAGGTGC CTTTGGGGCC CCATAGAGGC CAGGGAGGGT TTAGGGGATG GTTCTGGGAG GCGAGGGCTC 001600
001601 AGGAACAGCC CCTTTCCTGT GCCCCACTTG TGAAAGTCTC CATAAACCCC TGTGGCCCAC TCTGCCTTCC AGAGAGAGAG 001680
001681 GCTGAACTGC GAGGTGGCCA CCAACACAGA GGCCCTGCAG AGCGGCAGGA TGGAGATATG GAGCTCTACA TCTCTGTGCA 001760
001761 GAACCTGAGC CGTCCCAGCT CAGCAAGAAA GCATCGCTGG AGGGCAGCCT GGTGGAGACG GAGGTGTGTT ACAGGACCCA 001840
001841 GCTGGCCCAG CTGCAGGGGC TCATCAGAAG CATGGAACAG CAGCTGTGCG AGCTCTGCTG TGATGCAGAG CACCAGGACC 001920
001921 ACGAGCACCA GGTCCTTCTG GACGTGAAGA CGCGGCTGGA GCAGGAGATC GCCACCTACA GCCGCTTGCT AGAGGTTGAG 002000
002001 GACGCCCGGT GAGTGTGCAC CCAGgaggtg aaactgacga tgcaggctgg agtctgactg aggagccttg actgccaagt 002080
002081 taaagcgtct ggactagatc acGGGAACCT CCTCTGCCAG GGCCTGCTTC TCCCCAGCAG TGCTTACAGG GGCCTGGGCT 002160
002161 GGCTGGCATC CCTGGGTCGA TGGGTGCTCC TCTCCCTGCA GGCTGGCCAC TCAGTACTCC TTGTCCCTGG CCTCGCAGCC 002240
002241 CACCCGGGAA GCCACGGTGA CCAGCCACCA GGTGTGCCAT CGTGGAGGAA GTCCAGGTTG GAGAGGTGGT CTTCTGTAAG 002320
002321 CAGGTCCATC TCTCCACCCA CTGAGGCCCC TTTCTGCCTG TGACAGCCCC ACCTCGAGGG TCACGGCACA GCCATCAGCT 002400
002401 CCAGCTCCCA GCATGCTACT GCCACGCCCC GAGTGTCCGT CTGGGCACTG GTCCATGACC TGTTGTCTTT CTGTATCTAC 002480
002481 TTTCTGCAGC CCCTCACTGA GGAGGCCTCC TGGGTTTGTC CAGTGCCTGC TATTAAAGCT TTGCTCCAAG TTCAA
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Predicted Small Protein

Name NONHSAT146018_smProtein_422:706
Length 95
Molecular weight 10739.1697
Aromaticity 0.0957446808511
Instability index 46.6606382979
Isoelectric point 9.48724365234
Runs 12
Runs residual 0.00115633672525
Runs probability 0.0357857857858
Amino acid sequence MTPMVGDGCIRVSLLASIFTHAWASYPHHPLTPEGLGWVPEIPRRVLREDHGDSHHPHPG
SLPKRLQEGCWRVSWRLPRAFSHGAHVSPRSWWL
Secondary structure LLLLLLLLEEEHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLHHHHHLLLLLLLLLLLL
LLHHHHHHLLEEEEEELLLLLLLLLLLLLLLEEL
PRMN -
PiMo -