Difference between revisions of "Lnc-PSD4-1:14"
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| + | ==Annotation== | ||
| + | ===Name=== | ||
| + | lnc-PSD4-1:14 | ||
| + | |||
| + | ===Alias=== | ||
| + | NA | ||
| + | |||
| + | ===Disease=== | ||
| + | Disease: papillary thyroid cancer [http://www.ncbi.nlm.nih.gov/pubmed/26003293 (PMID:26003293)] | ||
| + | |||
| + | Dysfunction type: expression | ||
| + | |||
| + | Description: We randomly chose a total of 10 differentially expressed lncRNAs for qPCR, of which TCONSNAl2NA00010365, n386477, n340790, lnc-LLPH-2:1 and NRNA003225.2 were up-regulated and lnc-PSD4-1:14, n335550, lnc-KCMF1-2:1, lnc-PLA2R1-1:1 and ENST00000422494.1 were down-regulated in PTC. The results of qPCR were consistent with those of the microarray, in that all 10 lncRNAs were differentially expressed with the same trend (up- or down-regulated) and reached statistical significance. | ||
| + | |||
| + | |||
| + | ===Function=== | ||
| + | Function Mechanism: NA [http://www.ncbi.nlm.nih.gov/pubmed/26003293 (PMID:26003293)] | ||
| + | |||
| + | Biological Process: pathogenic process | ||
| + | |||
| + | Description: NA | ||
| + | |||
| + | |||
| + | ===Function=== | ||
| + | Function Mechanism: ceRNA [http://www.ncbi.nlm.nih.gov/pubmed/29216366 (PMID:29216366)] | ||
| + | |||
| + | Biological Process: NA | ||
| + | |||
| + | Description: NA | ||
| + | |||
| + | |||
| + | |||
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Latest revision as of 08:52, 5 November 2018
Contents
Annotation
Name
lnc-PSD4-1:14
Alias
NA
Disease
Disease: papillary thyroid cancer (PMID:26003293)
Dysfunction type: expression
Description: We randomly chose a total of 10 differentially expressed lncRNAs for qPCR, of which TCONSNAl2NA00010365, n386477, n340790, lnc-LLPH-2:1 and NRNA003225.2 were up-regulated and lnc-PSD4-1:14, n335550, lnc-KCMF1-2:1, lnc-PLA2R1-1:1 and ENST00000422494.1 were down-regulated in PTC. The results of qPCR were consistent with those of the microarray, in that all 10 lncRNAs were differentially expressed with the same trend (up- or down-regulated) and reached statistical significance.
Function
Function Mechanism: NA (PMID:26003293)
Biological Process: pathogenic process
Description: NA
Function
Function Mechanism: ceRNA (PMID:29216366)
Biological Process: NA
Description: NA
Same as ENST00000553319.1
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Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000553319.1 |
| Source |
Gencode19 |
| Same with |
lnc-PSD4-1:14,NONHSAT073771 |
| Classification |
intergenic |
| Length |
582 nt |
| Genomic location |
chr2+:113998307..113998987 |
| Exon number |
2 |
| Exons |
113998307..113998678,113998778..113998987 |
| Genome context |
|
| Sequence |
000001 CTCATTCATT TGTTCATTCA TTCACTATAC CATTACTGTC TATTATAAGG GGGGCACAAT GGTAGGTGCT GGGAATAAAA 000080
000081 ACGATGTTTA ACGTTTCATG AGGCTTCCCT GTCCTTAAGG AGTCCGCGTG TCTTTGTACC TGTCTGTCTG CTAGATTATT 000160 000161 AAGTGACACT GTGAGAAGCT ACTGAGAGCA GCATGTGGGA CATGCAGAAG GGCAAGAGGC AGGAGAGATG ATTCATGTCG 000240 000241 GAGGGGCAGG GGAGGACTGA CGGAGAGGGT GATGTTTGGC TGAGTCATGA AGGCTAGTGG TATTTTTCCA TGCAGAGAAG 000320 000321 TGGGAGGAAA GGCATTCTGT GTGGAGGGCA CACAGTGTGC AAGGGCAGAG AGGTCATTAT GTGAAGGCTT TGTGCTACTG 000400 000401 CTTCAGAGTT GTGGAACGTG ATGTTGCAAT CTGGGAAAGA CGCTGATGGC AAGGGATAGC ATCATCAGGT TGTGCTGCCA 000480 000481 TCCCTGAAAG GCCCAGGCTC AAAGGTTTTG GGTGAAGGAA GCCAGGAGGG TTAGAAAGGG AGGAAGATGC CAGGGCATCT 000560 000561 GGTAAAATAA AGCATGTGTC AG |
