Difference between revisions of "NONHSAT129210"

Latest revision as of 05:57, 25 June 2016

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Annotated Information

Name

PTCSC1 :papillary thyroid carcinoma susceptibility candidate 1 (non-protein coding)

AK023948

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

Annotation originally sourced from lncRNAdb.

Basic Information

Transcript ID	NONHSAT129210
Source	NONCODE4.0
Same with	,
Classification	intronic(AS)
Length	2807 nt
Genomic location	chr8+:134067204..134070012
Exon number	1
Exons	134067204..134070012
Genome context
Sequence	000001 TTTGTCACTT CCAGTGCCCT GCCCAGCCCT ACAGAAAATA CGTGATTATT TAAGGGTGAA GAAGCCAAAG CTGGGAGAGT 000080 000081 TTTAGTCACC TATCTAGGGG AAAGTGTGAA GATTTCAAAG CCCAGGGTCC TTCACGGAGC CACACGGCTC TCCTTGGCAC 000160 000161 TTAATCTTCA AGCTCTCCTC AGCCCACACT TGACCCTTAA CAGGGGAGAC AAAGGCAGAC TCCAGGTAAG TTGTCAGGGT 000240 000241 TAGCATAAGC AGCTCAGGGC AACTGGTGGG TAGGGAGCTG TACAGCCCAG GGATTGCAGC CTCTTGTTTT GCATTTCCTG 000320 000321 GAGTCAAGGC TAAACTCATG GTCTCCTCAG GGGTCAAAGC AGGCCTGACT TTCAGTGTCA TCTTCAGGAC ACACACACGC 000400 000401 ACGCGCACAC ACACACACAC ACACACACAC ACACACACAC ACACACAGGA TTATACATGC AACTAACCAA TCACACAGAG 000480 000481 CTGGACCATC TAGCCTGGTA GAAGGTCTGC CGAGTTCTGC GGGTCACCAT GAACCAGGCT TGTGAGCCCT CTTAGTCATA 000560 000561 TGTAAAGGGC TGTGTTTGAG ACCCGGTAGC CCACAAAGCT CTTTTCTGCC CAAGCCTTGG TTTTTCCGTA TGTTAGTGGG 000640 000641 GACAGATTGG AACTAAACAG ACCTTGAGTC TTTTCAGGGT CAGTCTCAAC TCTCTTAGAT GCTAGAGGGA TATAGGCAGG 000720 000721 GCTAGCACAG AACAGAAGCA AGAAATAGTC AAAATGAATA TTTTGGACTG CATAGACTCA GAATGTGCTT TACTTGGGCA 000800 000801 CCCAGGGCTT CTCAGACTTC AGTTGTTTTC ATTCCACCAT TCCCTTCCTC CCCCTCCTCA TCACCAGCAG CAGCAGCAGC 000880 000881 AGCAGCAGCA GCAGCAGCAG CAGCAGCAGC AGGGCGCACA GCTCTGGGGG GAATCAGGCA CTGGGCTGTG GTGGTACCGA 000960 000961 GGTTACCCCT GAAGTCCTCA CGCCTCCCTG TGAGGTTGAT AGATTGAAAC TACCTTATTT TGAGTATGAG GAAATAGAGG 001040 001041 CACAGTGAGG TCCAGAGACC GCCCAAGAGC ACACACCTAG GAAGCTGAGT GCCAGGTTTC AAAACCAGGT CTCCCTGGGC 001120 001121 AGGGCAGGGC ATGGCTGTGT TTGAACCACT CAGGTCTCCT TTGTCATAGT TGACAGCACT AGTTACTTGA TAATGTCTTT 001200 001201 TTAAAAATTA ATTTACTTAA AAAAACTTGA GTGCTATTCT AAGCAATGTG ACATCGTGGA TTTCTTGGGC TAGTTATATA 001280 001281 TTTTATGATG TTCATCAATG TACAATTATG TAAAAGTTGA ATGATCAAGT TCTGCCTAAG ACCATCTCAT GTACCAGCAG 001360 001361 CGAGGTTAGA TTCAAATAGA AAAAAGGGAT CTGGTCCAAG ATTTGACACG GATTCACTGT CTGTGGGACC CCTTGCTAGG 001440 001441 GCACTTGATC ATCTGGGTCA TTAAATCTGG GGGCCAGGCA CATTCTCATT CATTCGAGAC GAGCCCATCC TCTTCCAGAG 001520 001521 CATGGGGGCT TCTTGAAACC CTGTCCTTTC CAGGCACACA CTGAGGTGGG GAGAGGGACC CTGGAGTCAG ACCACCTGGC 001600 001601 TTTGAATCCC AGCTGTCTCC TCTGAGCTGT ATGGCCTAAG GCAAGTCATT TAAGCTTCTT GTACCTCAGA TTCTCCAACT 001680 001681 GCAAAACGGA GATGATAATA GGCAGAAGCC TCGTGGGGCT GTGAGAATCG AGTCTGCATA TGTAAAGCAC TGGGCACTGT 001760 001761 GTCTGGAGGC TGTGAGCACC AAGCGGC

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 ==Annotated Information==
+===Name===
+''PTCSC1'' :papillary thyroid carcinoma susceptibility candidate 1 (non-protein coding)
+AK023948
 ===Transcriptomic Nomeclature===
 Please input transcriptomic nomeclature information here.
@@ Line 26: / Line 31: @@
 ==References==
-Please input cited references here.
+[http://www.lncrnadb.org/AK023948/ Annotation originally sourced from lncRNAdb.]
 {{basic|
@@ Line 42: / Line 47: @@
 sequence = <dnaseq>TTTGTCACTTCCAGTGCCCTGCCCAGCCCTACAGAAAATACGTGATTATTTAAGGGTGAAGAAGCCAAAGCTGGGAGAGTTTTAGTCACCTATCTAGGGGAAAGTGTGAAGATTTCAAAGCCCAGGGTCCTTCACGGAGCCACACGGCTCTCCTTGGCACTTAATCTTCAAGCTCTCCTCAGCCCACACTTGACCCTTAACAGGGGAGACAAAGGCAGACTCCAGGTAAGTTGTCAGGGTTAGCATAAGCAGCTCAGGGCAACTGGTGGGTAGGGAGCTGTACAGCCCAGGGATTGCAGCCTCTTGTTTTGCATTTCCTGGAGTCAAGGCTAAACTCATGGTCTCCTCAGGGGTCAAAGCAGGCCTGACTTTCAGTGTCATCTTCAGGACACACACACGCACGCGCACACACACACACACACACACACACACACACACACACACACAGGATTATACATGCAACTAACCAATCACACAGAGCTGGACCATCTAGCCTGGTAGAAGGTCTGCCGAGTTCTGCGGGTCACCATGAACCAGGCTTGTGAGCCCTCTTAGTCATATGTAAAGGGCTGTGTTTGAGACCCGGTAGCCCACAAAGCTCTTTTCTGCCCAAGCCTTGGTTTTTCCGTATGTTAGTGGGGACAGATTGGAACTAAACAGACCTTGAGTCTTTTCAGGGTCAGTCTCAACTCTCTTAGATGCTAGAGGGATATAGGCAGGGCTAGCACAGAACAGAAGCAAGAAATAGTCAAAATGAATATTTTGGACTGCATAGACTCAGAATGTGCTTTACTTGGGCACCCAGGGCTTCTCAGACTTCAGTTGTTTTCATTCCACCATTCCCTTCCTCCCCCTCCTCATCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGCGCACAGCTCTGGGGGGAATCAGGCACTGGGCTGTGGTGGTACCGAGGTTACCCCTGAAGTCCTCACGCCTCCCTGTGAGGTTGATAGATTGAAACTACCTTATTTTGAGTATGAGGAAATAGAGGCACAGTGAGGTCCAGAGACCGCCCAAGAGCACACACCTAGGAAGCTGAGTGCCAGGTTTCAAAACCAGGTCTCCCTGGGCAGGGCAGGGCATGGCTGTGTTTGAACCACTCAGGTCTCCTTTGTCATAGTTGACAGCACTAGTTACTTGATAATGTCTTTTTAAAAATTAATTTACTTAAAAAAACTTGAGTGCTATTCTAAGCAATGTGACATCGTGGATTTCTTGGGCTAGTTATATATTTTATGATGTTCATCAATGTACAATTATGTAAAAGTTGAATGATCAAGTTCTGCCTAAGACCATCTCATGTACCAGCAGCGAGGTTAGATTCAAATAGAAAAAAGGGATCTGGTCCAAGATTTGACACGGATTCACTGTCTGTGGGACCCCTTGCTAGGGCACTTGATCATCTGGGTCATTAAATCTGGGGGCCAGGCACATTCTCATTCATTCGAGACGAGCCCATCCTCTTCCAGAGCATGGGGGCTTCTTGAAACCCTGTCCTTTCCAGGCACACACTGAGGTGGGGAGAGGGACCCTGGAGTCAGACCACCTGGCTTTGAATCCCAGCTGTCTCCTCTGAGCTGTATGGCCTAAGGCAAGTCATTTAAGCTTCTTGTACCTCAGATTCTCCAACTGCAAAACGGAGATGATAATAGGCAGAAGCCTCGTGGGGCTGTGAGAATCGAGTCTGCATATGTAAAGCACTGGGCACTGTGTCTGGAGGCTGTGAGCACCAAGCGGCTCTAATCATTCCCGTTTTACAAAGGAGGACAGAGAGACTAAGGAGACAAACTCTTTCTCATCTCTCGTTGTGTGTCAGTGCAGGGGCAGGACTAAAAGCTGGTCTGTGGTCTGCAAGCTTTAGGGGTTACAGAGTCCCCAGGAACTCCTAGGAAATTCAGCTGGCGGCTACCTTCCACCATCCCCAGGTTCTGATTCGTGGGCCTGGGGTGGGACCCAGGAATCTGCATTTCAGTTACTTCCCAGGGGATTCTGATGCAGGTGGTGCGAAGACCACTTACTGAGAAGCTGCAAGCTGGGTTTGAGAGGTCCCTACCTCCTTCTTCCTTCCCCGAGCCCCACCCGCCCCCTTCTTTCCACTGGGCAACTATGTAAACAGCATTATTTCTACCCTTGCACGGACAGAAAGGGGTCTGTGCTGCTGCCTCTGTTGGTGCCTCTTCAGGTCAGGGTGATAAGAAGAGAAGGAACAAAGAGGGGAAAAAGATCACAGCAGAGAGACAGAGTGCTCATTTTAAGGTGGAAATATGCCATTTCCTGACCACAGCGGGACTTCCCTAGGTTGTATTAAAAAATCCTGTACTGCCCATGTCTGGTACAGAAGTATGTATAGAATTGTAGAGAAAATGAACACTTTGGGATGATTTGAAAGCAAATTACAGAACTACCAGTTTCACCACTTTAAAACTTTTGGGGAATGGCCATTTAGATATAACCTGGTGCAGTCAGGTAACCCCAAACAGAGTTTTTAAAAGTTTCCACACCCTTCTTTGCTGGTGCCTGCCCTGCATCATGCTGTCGCTGTGAGGAGGGACTTGTTCCAGATCTCTGGGGCAGCCCGAGTGTCTCACCTAAAGTCACACAGCTTCCACGGAACATTACTGGAAGCTCAGTGAGGGCCTTCTGCCTCTGAAACTTGCTCTATTTCCCTCAAGTCCTGCTTCCTTTTGTAGGTTTAAGACATTAGTTCCTGAGAAATTGACTAATCAAGAATATTCTGGAAATCTTAGTTTAGCAAAAC</dnaseq>|
 }}
-[[Category:Intronic(AS)]]
+[[Category:Intronic(AS)]][[Category:NONHSAG051327]][[Category:Transcripts]]
-{{lncrnadb|
-tID = NONHSAT129210|
-ltID = AK023948|
-ann = <tab class=wikitable sep=tab head=top>
-Section	Description
-ID	AK023948
-Features	AK023948 is embedded in the TG-SLA (thyroglobulin and Src-like adaptor) locus on chromosome 8q24, a susceptibility locus for papillary thyroid carcinoma (PTC). An unspliced cDNA, AK023948 is located in an intron of both the TG (sense orientation) and SLA (antisense) genes. A 12 Kb haplotype containing 8 SNP markers for PTC is harboured in the TG-SLA locus, which also includes two additional putative noncoding RNA genes. AK023948 (cDNA FLJ13886 fis, clone THYRO1001559) was cloned from thyroid gland and is 2,807b long [http://www.ncbi.nlm.nih.gov/pubmed/14702039 (Ota (2004))]. The transcript is significantly down-regulated in most PTC tumors, thus representing a candidate susceptibility gene for PTC.
-</tab>|
-}}