Difference between revisions of "ENST00000416894.1"

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==References==
 
==References==
Please input cited references here.
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[http://www.lncrnadb.org/LINC00568/ Annotation originally sourced from lncRNAdb.]
  
 
{{basic|
 
{{basic|
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sequence = <dnaseq>GCGCATCTCCTACGGCCTCCAGGACAGAGGAACCGGGGGAGGCAGGGGGAAAAGGCCGGCCCAGCAATTCCCCTACCCCCCGGTCCCACGTGTACCCTCCTGGCCTGGGTCGCCCCAGCCCACGGGGAGCGGGCGGAGTCCTGGCCCACGAAGCCTTGTCACCTGGCGGGCGAATCCGCAAGCGGAGACTTGTCTTTAAAGGGCTTTGGGCCGGGCGCGGTGGCTCATGCCTGGAATCCCAGCACTTTGGGAGGCCGAGGCGGTGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAAGAAGCTCATACTGACTAAGGCAGCAGAACATACAGGAGGAAGAGGAGCAGGTTTCACAGAGGGAAGACATGAGTTCAATTTTGGACTTCTCAGTAGTCGGTGTCCTCAGTGGTAGCAACTTCAAACGGAAGGTGTCAAAAGTCAAATTCTGGAGAGTTGAGTATGAATGGGAGATGAAGAAAAGGAGGCAGCACTTGTAGCCTGCTCTTAATGTATTTCTGCACTCTACACTAGCAGCCTATTACACAGGACACTTGGATGTCT</dnaseq>|
 
sequence = <dnaseq>GCGCATCTCCTACGGCCTCCAGGACAGAGGAACCGGGGGAGGCAGGGGGAAAAGGCCGGCCCAGCAATTCCCCTACCCCCCGGTCCCACGTGTACCCTCCTGGCCTGGGTCGCCCCAGCCCACGGGGAGCGGGCGGAGTCCTGGCCCACGAAGCCTTGTCACCTGGCGGGCGAATCCGCAAGCGGAGACTTGTCTTTAAAGGGCTTTGGGCCGGGCGCGGTGGCTCATGCCTGGAATCCCAGCACTTTGGGAGGCCGAGGCGGTGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAAGAAGCTCATACTGACTAAGGCAGCAGAACATACAGGAGGAAGAGGAGCAGGTTTCACAGAGGGAAGACATGAGTTCAATTTTGGACTTCTCAGTAGTCGGTGTCCTCAGTGGTAGCAACTTCAAACGGAAGGTGTCAAAAGTCAAATTCTGGAGAGTTGAGTATGAATGGGAGATGAAGAAAAGGAGGCAGCACTTGTAGCCTGCTCTTAATGTATTTCTGCACTCTACACTAGCAGCCTATTACACAGGACACTTGGATGTCT</dnaseq>|
 
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[[Category:Intergenic]]
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[[Category:Intergenic]][[Category:lnc-ECM1-1]][[Category:NONHSAG002854]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 03:17, 26 August 2015

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Annotated Information

Name

LINC00568

Characteristics

Spliced two exon transcript of ~550 nt in length (Arom (2010)). ~2kb downstream from 3' of Extracellular Matrix Protein 1 (ECM1), however a H3K4me3 peak at the TSS provides good evidence it is an independent transcript (Arom (2010)). In-vitro translation showed no sign of a protein product (Arom (2010)).

Function

LncRNA stimulates ECM1 gene expression (in HEK293 cells) (Arom (2010)).

Expression

ECM1 and LINC00568 are both upregulated during differentiation of primary human keratinocytes with TPA (Arom (2010)). LINC00568 identified as enriched in K562 and HepG2 nuclear fractions (Derrien (2012)).

Conservation

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Misc

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Transcriptomic Nomeclature

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Regulation

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

Annotation originally sourced from lncRNAdb.

Basic Information

Transcript ID

ENST00000416894.1

Source

Gencode19

Same with

lnc-ECM1-1:1,NONHSAT006301

Classification

intergenic

Length

566 nt

Genomic location

chr1+:150488233..150490508

Exon number

2

Exons

150488233..150488538,150490249..150490508

Genome context

Sequence
000001 GCGCATCTCC TACGGCCTCC AGGACAGAGG AACCGGGGGA GGCAGGGGGA AAAGGCCGGC CCAGCAATTC CCCTACCCCC 000080
000081 CGGTCCCACG TGTACCCTCC TGGCCTGGGT CGCCCCAGCC CACGGGGAGC GGGCGGAGTC CTGGCCCACG AAGCCTTGTC 000160
000161 ACCTGGCGGG CGAATCCGCA AGCGGAGACT TGTCTTTAAA GGGCTTTGGG CCGGGCGCGG TGGCTCATGC CTGGAATCCC 000240
000241 AGCACTTTGG GAGGCCGAGG CGGTGGATCA CGAGGTCAGG AGTTCAAGAC CAGCCTGGCC AAGAAGCTCA TACTGACTAA 000320
000321 GGCAGCAGAA CATACAGGAG GAAGAGGAGC AGGTTTCACA GAGGGAAGAC ATGAGTTCAA TTTTGGACTT CTCAGTAGTC 000400
000401 GGTGTCCTCA GTGGTAGCAA CTTCAAACGG AAGGTGTCAA AAGTCAAATT CTGGAGAGTT GAGTATGAAT GGGAGATGAA 000480
000481 GAAAAGGAGG CAGCACTTGT AGCCTGCTCT TAATGTATTT CTGCACTCTA CACTAGCAGC CTATTACACA GGACACTTGG 000560
000561 ATGTCT
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