Difference between revisions of "NONHSAT022631"
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sequence = <dnaseq>GGGAAGGGTGGGGGAGGGCTGGCTTTTGAGGGCAGTGGGTTCCCATGCCCAGCCCCATGAAGGACGGGGTTCACGGAAGACCCCAGTATCGCAAGTCTGTAGCCAGCACGGGGGGCCTGCATTCCTTCTGCAGGAGAAGCACGAAAGAGCTATTCTTCTCAATTCGCCAAGGAGGAAACTGAGGCCCAGCAGGGCAGGAGAGCCCGGGTTACAGCGCAGGCGGGAGGCTGAGCTCAGCCTCAAGTCCCATCTGCACGCCCAAGGTGCGGCCCCCCTTAGTAGGAGCCGCGACTAAGGGTGACGCTGTTTCTCGGCCCAGGGGGCAAAAGAGCCCGACCGGAAGCTGCTCTTGGAAGACAGAAGCCCATGTGCAGGGAATGTGCCAGTGCCCAGCAGATGGTGCATTTCATTATGGGAAGCTCCGGGCCTCCCAGCTGGCCTGTTTGGCCACAGTGTTGCTCTTCAGTGTCATTTGATGGCATGTGCCAACAGATACAGtatacgtgctgccgaagcgagcacTTTGCGGACATTTTAATAGTCACCGGGGATGCAAGCATCAGGTGACAAGGAGCGCAGACCAACAAGCTGTCAGGAGGGTGGCTTCCTGGTAGGAGGCAGCACAGGGGAGCCCTTTTCAACGATATTTTATTTCCATCCCGTTGGCATTGCCCACAGGGAAGAATACCTCAGAGCACGGGCCAAGCTGTCTGCAACTCAGTGGGAAGTTGAACAAACCAAACTTTACAAAGGGAGGAAGAACGAGGTGCCCCAAATTATGGAGACACAGGGACTGGTTACCAAGACCATGGACCGGAACAAGAACCTCGCTCCCCATTAACCAACCGCATGGCCTTGGTGTGCCTAGATTTCCTCTTTTGTAAAGTGAGGCTGAAGTGTCTCCCTTTGGATGGTAGGCGAGGACCAAGAGGCCCAGCGCCTGGCGGTGGTGAGTCCAGGCCAGGGAGGCAAAGGTCTCTTCTAATAAAGGAGCTCTAGCGTGGGGCACAGTGGATGTctcagcacagtggatgtgtggggctggatcatcctctgtggtgggagctggcttgtgcagtgtgggacattttgcaggcaccctgg</dnaseq>| | sequence = <dnaseq>GGGAAGGGTGGGGGAGGGCTGGCTTTTGAGGGCAGTGGGTTCCCATGCCCAGCCCCATGAAGGACGGGGTTCACGGAAGACCCCAGTATCGCAAGTCTGTAGCCAGCACGGGGGGCCTGCATTCCTTCTGCAGGAGAAGCACGAAAGAGCTATTCTTCTCAATTCGCCAAGGAGGAAACTGAGGCCCAGCAGGGCAGGAGAGCCCGGGTTACAGCGCAGGCGGGAGGCTGAGCTCAGCCTCAAGTCCCATCTGCACGCCCAAGGTGCGGCCCCCCTTAGTAGGAGCCGCGACTAAGGGTGACGCTGTTTCTCGGCCCAGGGGGCAAAAGAGCCCGACCGGAAGCTGCTCTTGGAAGACAGAAGCCCATGTGCAGGGAATGTGCCAGTGCCCAGCAGATGGTGCATTTCATTATGGGAAGCTCCGGGCCTCCCAGCTGGCCTGTTTGGCCACAGTGTTGCTCTTCAGTGTCATTTGATGGCATGTGCCAACAGATACAGtatacgtgctgccgaagcgagcacTTTGCGGACATTTTAATAGTCACCGGGGATGCAAGCATCAGGTGACAAGGAGCGCAGACCAACAAGCTGTCAGGAGGGTGGCTTCCTGGTAGGAGGCAGCACAGGGGAGCCCTTTTCAACGATATTTTATTTCCATCCCGTTGGCATTGCCCACAGGGAAGAATACCTCAGAGCACGGGCCAAGCTGTCTGCAACTCAGTGGGAAGTTGAACAAACCAAACTTTACAAAGGGAGGAAGAACGAGGTGCCCCAAATTATGGAGACACAGGGACTGGTTACCAAGACCATGGACCGGAACAAGAACCTCGCTCCCCATTAACCAACCGCATGGCCTTGGTGTGCCTAGATTTCCTCTTTTGTAAAGTGAGGCTGAAGTGTCTCCCTTTGGATGGTAGGCGAGGACCAAGAGGCCCAGCGCCTGGCGGTGGTGAGTCCAGGCCAGGGAGGCAAAGGTCTCTTCTAATAAAGGAGCTCTAGCGTGGGGCACAGTGGATGTctcagcacagtggatgtgtggggctggatcatcctctgtggtgggagctggcttgtgcagtgtgggacattttgcaggcaccctgg</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]][[Category:NONHSAG008906]] | + | [[Category:Antisense]][[Category:NONHSAG008906]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:38, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT022631 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
antisense |
| Length |
1104 nt |
| Genomic location |
chr11-:69920887..69931427 |
| Exon number |
4 |
| Exons |
69920887..69921492,69921608..69921709,69930302..69930378,69931109..69931427 |
| Genome context |
|
| Sequence |
000001 GGGAAGGGTG GGGGAGGGCT GGCTTTTGAG GGCAGTGGGT TCCCATGCCC AGCCCCATGA AGGACGGGGT TCACGGAAGA 000080
000081 CCCCAGTATC GCAAGTCTGT AGCCAGCACG GGGGGCCTGC ATTCCTTCTG CAGGAGAAGC ACGAAAGAGC TATTCTTCTC 000160 000161 AATTCGCCAA GGAGGAAACT GAGGCCCAGC AGGGCAGGAG AGCCCGGGTT ACAGCGCAGG CGGGAGGCTG AGCTCAGCCT 000240 000241 CAAGTCCCAT CTGCACGCCC AAGGTGCGGC CCCCCTTAGT AGGAGCCGCG ACTAAGGGTG ACGCTGTTTC TCGGCCCAGG 000320 000321 GGGCAAAAGA GCCCGACCGG AAGCTGCTCT TGGAAGACAG AAGCCCATGT GCAGGGAATG TGCCAGTGCC CAGCAGATGG 000400 000401 TGCATTTCAT TATGGGAAGC TCCGGGCCTC CCAGCTGGCC TGTTTGGCCA CAGTGTTGCT CTTCAGTGTC ATTTGATGGC 000480 000481 ATGTGCCAAC AGATACAGta tacgtgctgc cgaagcgagc acTTTGCGGA CATTTTAATA GTCACCGGGG ATGCAAGCAT 000560 000561 CAGGTGACAA GGAGCGCAGA CCAACAAGCT GTCAGGAGGG TGGCTTCCTG GTAGGAGGCA GCACAGGGGA GCCCTTTTCA 000640 000641 ACGATATTTT ATTTCCATCC CGTTGGCATT GCCCACAGGG AAGAATACCT CAGAGCACGG GCCAAGCTGT CTGCAACTCA 000720 000721 GTGGGAAGTT GAACAAACCA AACTTTACAA AGGGAGGAAG AACGAGGTGC CCCAAATTAT GGAGACACAG GGACTGGTTA 000800 000801 CCAAGACCAT GGACCGGAAC AAGAACCTCG CTCCCCATTA ACCAACCGCA TGGCCTTGGT GTGCCTAGAT TTCCTCTTTT 000880 000881 GTAAAGTGAG GCTGAAGTGT CTCCCTTTGG ATGGTAGGCG AGGACCAAGA GGCCCAGCGC CTGGCGGTGG TGAGTCCAGG 000960 000961 CCAGGGAGGC AAAGGTCTCT TCTAATAAAG GAGCTCTAGC GTGGGGCACA GTGGATGTct cagcacagtg gatgtgtggg 001040 001041 gctggatcat cctctgtggt gggagctggc ttgtgcagtg tgggacattt tgcaggcacc ctgg |
Predicted Small Protein
| Name | NONHSAT022631_smProtein_44:181 |
| Length | 46 |
| Molecular weight | 5009.6689 |
| Aromaticity | 0.0888888888889 |
| Instability index | 61.2177777778 |
| Isoelectric point | 10.9531860352 |
| Runs | 9 |
| Runs residual | 0.0377525252525 |
| Runs probability | 0.0220710906986 |
| Amino acid sequence | MPSPMKDGVHGRPQYRKSVASTGGLHSFCRRSTKELFFSIRQGGN |
| Secondary structure | LLLLLLLLLLLLLLLLEEELLLLLEEHHHHLLLHHHHEEEELLLL |
| PRMN | - |
| PiMo | - |
