Difference between revisions of "NONHSAT138975"

From LncRNAWiki
Jump to: navigation, search
 
Line 42: Line 42:
 
sequence = <dnaseq>cgaggCTGCACCACCCTTATCAGGTTCCAGTTCtcggtgcgccccgttctgcaagacactctcctgtggtcagccctggtctgcagaggattcccgcgctggatctctgaaggatgctggcgccctctctgcagcacattcctgatgcccttgctgacacgtgtcctctgggccctctcctgaaacctgattctccggggtgtcttctggcctcacctcttctgtccagttccaACCCAGCACACCCTGCCTGCATGGCGCTGCGCTGCACCTTCACTCTGGTCACGGGTCTGGCAGTCAGCTCaccaattcctcctgcttccctgggacttgccggcttttagcactgcaattcactcagcaaactgggactgttggtcaccctacctggcagccagtgataagggctggtgtcattggcatgacagacctgccttggctgagcgttcacctgtctttggagttcagccaccttagcaagtcctgggtttgttcttcagactttgctgctcgcccattgcctggatcgggggctactttgtaaaccaccaggaagactccagtgtttctggttaatttttagatgtttgttaattgctcttggtctctcattaatcccctgtgggtcatccaggaaacatactcaccactgtctgttctctgagttttcatttccaggcatccgccctgcctggatctcctcacctgccaggaacttcctctccacaagccggccatcccagcaaaagttctaacaccaaaggtctggcaactagcctgccatcttgtgcctggagccgcctgcgtgccacctactcccgaagatgggaaccttgttgccagttgggcagatgcggggcaatcctgtaccaagaccccattttaccacctgctttctcagaccactctggaacccactgtctcagattgtgtcctccaggaagcagaccatgagagggagttggcagggccaaagatttactggggctaactaacactcaggaaagggataggaaggaaacagggctggagagcaggttgagcccgacctgacagtctcgagcagcccaacagggaggtgtggagcaagggttgcccactagaggggcctgcattgggtaCGGGTGATGGGGTCCACATGgtacctggcatatagcaggctgtgcaatccatattaactgactggataaatTAATGCCCAGAAAAGGTGCCCTGGAGAATGGGTGTGTGCTGAACACAATAGGGAAGGGCCCAGCATCTGCCTTGGCATAGGCAGAACTGTGCTGTGCCCTGCAACAGGCCACCTGAGAGCTGCTTTGATCTTGTGTGTACATTAGATGACTGCCAGGGGCATGAAGGGGATGTGCTTCCAGGGCATTTGCTGGCAGGGCGTCTCGTGATCTCTTGGTATTGGTGTGAGCACAGCCTGGCAGGAGAGGGCAGATCTCCATGCAAAGTATGTCAGAAAGCAGATGGAAGCCAGGCCCCCTCCTGAAAG</dnaseq>|
 
sequence = <dnaseq>cgaggCTGCACCACCCTTATCAGGTTCCAGTTCtcggtgcgccccgttctgcaagacactctcctgtggtcagccctggtctgcagaggattcccgcgctggatctctgaaggatgctggcgccctctctgcagcacattcctgatgcccttgctgacacgtgtcctctgggccctctcctgaaacctgattctccggggtgtcttctggcctcacctcttctgtccagttccaACCCAGCACACCCTGCCTGCATGGCGCTGCGCTGCACCTTCACTCTGGTCACGGGTCTGGCAGTCAGCTCaccaattcctcctgcttccctgggacttgccggcttttagcactgcaattcactcagcaaactgggactgttggtcaccctacctggcagccagtgataagggctggtgtcattggcatgacagacctgccttggctgagcgttcacctgtctttggagttcagccaccttagcaagtcctgggtttgttcttcagactttgctgctcgcccattgcctggatcgggggctactttgtaaaccaccaggaagactccagtgtttctggttaatttttagatgtttgttaattgctcttggtctctcattaatcccctgtgggtcatccaggaaacatactcaccactgtctgttctctgagttttcatttccaggcatccgccctgcctggatctcctcacctgccaggaacttcctctccacaagccggccatcccagcaaaagttctaacaccaaaggtctggcaactagcctgccatcttgtgcctggagccgcctgcgtgccacctactcccgaagatgggaaccttgttgccagttgggcagatgcggggcaatcctgtaccaagaccccattttaccacctgctttctcagaccactctggaacccactgtctcagattgtgtcctccaggaagcagaccatgagagggagttggcagggccaaagatttactggggctaactaacactcaggaaagggataggaaggaaacagggctggagagcaggttgagcccgacctgacagtctcgagcagcccaacagggaggtgtggagcaagggttgcccactagaggggcctgcattgggtaCGGGTGATGGGGTCCACATGgtacctggcatatagcaggctgtgcaatccatattaactgactggataaatTAATGCCCAGAAAAGGTGCCCTGGAGAATGGGTGTGTGCTGAACACAATAGGGAAGGGCCCAGCATCTGCCTTGGCATAGGCAGAACTGTGCTGTGCCCTGCAACAGGCCACCTGAGAGCTGCTTTGATCTTGTGTGTACATTAGATGACTGCCAGGGGCATGAAGGGGATGTGCTTCCAGGGCATTTGCTGGCAGGGCGTCTCGTGATCTCTTGGTATTGGTGTGAGCACAGCCTGGCAGGAGAGGGCAGATCTCCATGCAAAGTATGTCAGAAAGCAGATGGAAGCCAGGCCCCCTCCTGAAAG</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG055499]]
+
[[Category:Intergenic]][[Category:NONHSAG055499]][[Category:Transcripts]]

Latest revision as of 02:52, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT138975

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1498 nt

Genomic location

chrX+:149113543..149115552

Exon number

3

Exons

149113543..149113776,149114076..149114246,149114460..149115552

Genome context

Sequence
000001 cgaggCTGCA CCACCCTTAT CAGGTTCCAG TTCtcggtgc gccccgttct gcaagacact ctcctgtggt cagccctggt 000080
000081 ctgcagagga ttcccgcgct ggatctctga aggatgctgg cgccctctct gcagcacatt cctgatgccc ttgctgacac 000160
000161 gtgtcctctg ggccctctcc tgaaacctga ttctccgggg tgtcttctgg cctcacctct tctgtccagt tccaACCCAG 000240
000241 CACACCCTGC CTGCATGGCG CTGCGCTGCA CCTTCACTCT GGTCACGGGT CTGGCAGTCA GCTCaccaat tcctcctgct 000320
000321 tccctgggac ttgccggctt ttagcactgc aattcactca gcaaactggg actgttggtc accctacctg gcagccagtg 000400
000401 ataagggctg gtgtcattgg catgacagac ctgccttggc tgagcgttca cctgtctttg gagttcagcc accttagcaa 000480
000481 gtcctgggtt tgttcttcag actttgctgc tcgcccattg cctggatcgg gggctacttt gtaaaccacc aggaagactc 000560
000561 cagtgtttct ggttaatttt tagatgtttg ttaattgctc ttggtctctc attaatcccc tgtgggtcat ccaggaaaca 000640
000641 tactcaccac tgtctgttct ctgagttttc atttccaggc atccgccctg cctggatctc ctcacctgcc aggaacttcc 000720
000721 tctccacaag ccggccatcc cagcaaaagt tctaacacca aaggtctggc aactagcctg ccatcttgtg cctggagccg 000800
000801 cctgcgtgcc acctactccc gaagatggga accttgttgc cagttgggca gatgcggggc aatcctgtac caagacccca 000880
000881 ttttaccacc tgctttctca gaccactctg gaacccactg tctcagattg tgtcctccag gaagcagacc atgagaggga 000960
000961 gttggcaggg ccaaagattt actggggcta actaacactc aggaaaggga taggaaggaa acagggctgg agagcaggtt 001040
001041 gagcccgacc tgacagtctc gagcagccca acagggaggt gtggagcaag ggttgcccac tagaggggcc tgcattgggt 001120
001121 aCGGGTGATG GGGTCCACAT Ggtacctggc atatagcagg ctgtgcaatc catattaact gactggataa atTAATGCCC 001200
001201 AGAAAAGGTG CCCTGGAGAA TGGGTGTGTG CTGAACACAA TAGGGAAGGG CCCAGCATCT GCCTTGGCAT AGGCAGAACT 001280
001281 GTGCTGTGCC CTGCAACAGG CCACCTGAGA GCTGCTTTGA TCTTGTGTGT ACATTAGATG ACTGCCAGGG GCATGAAGGG 001360
001361 GATGTGCTTC CAGGGCATTT GCTGGCAGGG CGTCTCGTGA TCTCTTGGTA TTGGTGTGAG CACAGCCTGG CAGGAGAGGG 001440
001441 CAGATCTCCA TGCAAAGTAT GTCAGAAAGC AGATGGAAGC CAGGCCCCCT CCTGAAAG
[back to top]

Predicted Small Protein

Name NONHSAT138975_smProtein_113:343
Length 77
Molecular weight 7604.9275
Aromaticity 0.0263157894737
Instability index 75.7815789474
Isoelectric point 5.94317626953
Runs 10
Runs residual 0.00983061101028
Runs probability 0.0679738562092
Amino acid sequence MLAPSLQHIPDALADTCPLGPLLKPDSPGCLLASPLLSSSNPAHPACMALRCTFTLVTGL
AVSSPIPPASLGLAGF
Secondary structure LLLLLLLLLHHHHHLLLLLLLLLLLLLLLEEELLLLLLLLLLLLHHHHHHHHHEEEEELL
EELLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH
HHHLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTT
TTTooooooooooooo