Difference between revisions of "NONHSAT138978"
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sequence = <dnaseq>CTGATCCTGCAGCTCCTCGAGGGTGTCATCGCTTTCCCCCTTCCCAGACCCAGCACACCCTGCCTGCATGGCGCTGCGCTGCACCTTCACTCTGGTCACGGGTCTGGCAGTCAGCTCaccaattcctcctgcttccctgggacttgccggcttttagcactgcaattcactcagcaaactgggactgttggtcaccctacctggcagccagtgataaggtgagggccactcctgggagggaggacacctgtggggaaaattcttgtgttatttatttctccttcgggatagggtgcctgcagcgcttcatgggagggggtgggctgatgctgcgggctcagaagtttcaagggcatctggggagaccagatattcagagaccttctagatgtgcctgttccatgtatcagggacgcaggttttcccaacagggctggtgtcattggcatgacagacctgccttggctgagcgttcacctgtctttggagttcagccaccttagcaagtcctgggtttgttcttcagactttgctgctcgcccattgcctggatcgggggctactttgtaaaccaccaggaagactccagtgtttctggttaatttttagatgtttgttaattgctcttggtctctcattaatcccctgtgggtcatccaggaaacatactcaccactgtctgttctctgagttttcatttccaggcatccgccctgcctggatctcctcacctgccaggaacttcctctccacaagccggccatcccagcaaaagttctaacaccaaagATGACTGCCAGGGGCATGAAGGGGATGTGCTTCCAGGGCATTTGCTGGCAGGGCGTCTCGTGATCTCTTGGTATTGGTGTGAGCACAGCCTGGCAGGAGAGGGCAGATCTCCATGCAAAGTATGTCAGAAAGCAGATGGAAGCCAGGCCCCCTCCTGAAAGAGGCTCCTTGAAGGTAGGTGCACACTCATGTCTTTGTTACTTGTAAGGGGGCATCTTACAGGCAAGAGGAGTTAGGTGAATGTGAagaggaaggaactactctgggcagggggctgggggacgcttcgtagaggagggggtgtttgagctgggccttgaaggtcaaaagggttttgttaggtgggaaatgggggaaggacagtctgaaagggttaggtacattcaaggagcccagagAAGGTTCGTGGCTGGAGCAGACGCATTCGTAGAGTGAAGTCATGGGAGAGAAGAGGCTGGGAAACTAGATTGGTTCCAACTCCTAAAGGACCACTGAAGGAGTGTGGGCTGCACGCTGGGTGCAGCAGGTGAGTTTCCTCACTTGGGTTTCACTGTCAGCATTTTAAAAAGGCAAACTGGT</dnaseq>| | sequence = <dnaseq>CTGATCCTGCAGCTCCTCGAGGGTGTCATCGCTTTCCCCCTTCCCAGACCCAGCACACCCTGCCTGCATGGCGCTGCGCTGCACCTTCACTCTGGTCACGGGTCTGGCAGTCAGCTCaccaattcctcctgcttccctgggacttgccggcttttagcactgcaattcactcagcaaactgggactgttggtcaccctacctggcagccagtgataaggtgagggccactcctgggagggaggacacctgtggggaaaattcttgtgttatttatttctccttcgggatagggtgcctgcagcgcttcatgggagggggtgggctgatgctgcgggctcagaagtttcaagggcatctggggagaccagatattcagagaccttctagatgtgcctgttccatgtatcagggacgcaggttttcccaacagggctggtgtcattggcatgacagacctgccttggctgagcgttcacctgtctttggagttcagccaccttagcaagtcctgggtttgttcttcagactttgctgctcgcccattgcctggatcgggggctactttgtaaaccaccaggaagactccagtgtttctggttaatttttagatgtttgttaattgctcttggtctctcattaatcccctgtgggtcatccaggaaacatactcaccactgtctgttctctgagttttcatttccaggcatccgccctgcctggatctcctcacctgccaggaacttcctctccacaagccggccatcccagcaaaagttctaacaccaaagATGACTGCCAGGGGCATGAAGGGGATGTGCTTCCAGGGCATTTGCTGGCAGGGCGTCTCGTGATCTCTTGGTATTGGTGTGAGCACAGCCTGGCAGGAGAGGGCAGATCTCCATGCAAAGTATGTCAGAAAGCAGATGGAAGCCAGGCCCCCTCCTGAAAGAGGCTCCTTGAAGGTAGGTGCACACTCATGTCTTTGTTACTTGTAAGGGGGCATCTTACAGGCAAGAGGAGTTAGGTGAATGTGAagaggaaggaactactctgggcagggggctgggggacgcttcgtagaggagggggtgtttgagctgggccttgaaggtcaaaagggttttgttaggtgggaaatgggggaaggacagtctgaaagggttaggtacattcaaggagcccagagAAGGTTCGTGGCTGGAGCAGACGCATTCGTAGAGTGAAGTCATGGGAGAGAAGAGGCTGGGAAACTAGATTGGTTCCAACTCCTAAAGGACCACTGAAGGAGTGTGGGCTGCACGCTGGGTGCAGCAGGTGAGTTTCCTCACTTGGGTTTCACTGTCAGCATTTTAAAAAGGCAAACTGGT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG055499]] | + | [[Category:Intergenic]][[Category:NONHSAG055499]][[Category:Transcripts]] |
Latest revision as of 02:52, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT138978 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1368 nt |
Genomic location |
chrX+:149114029..149115970 |
Exon number |
2 |
Exons |
149114029..149114817,149115392..149115970 |
Genome context |
|
Sequence |
000001 CTGATCCTGC AGCTCCTCGA GGGTGTCATC GCTTTCCCCC TTCCCAGACC CAGCACACCC TGCCTGCATG GCGCTGCGCT 000080
000081 GCACCTTCAC TCTGGTCACG GGTCTGGCAG TCAGCTCacc aattcctcct gcttccctgg gacttgccgg cttttagcac 000160 000161 tgcaattcac tcagcaaact gggactgttg gtcaccctac ctggcagcca gtgataaggt gagggccact cctgggaggg 000240 000241 aggacacctg tggggaaaat tcttgtgtta tttatttctc cttcgggata gggtgcctgc agcgcttcat gggagggggt 000320 000321 gggctgatgc tgcgggctca gaagtttcaa gggcatctgg ggagaccaga tattcagaga ccttctagat gtgcctgttc 000400 000401 catgtatcag ggacgcaggt tttcccaaca gggctggtgt cattggcatg acagacctgc cttggctgag cgttcacctg 000480 000481 tctttggagt tcagccacct tagcaagtcc tgggtttgtt cttcagactt tgctgctcgc ccattgcctg gatcgggggc 000560 000561 tactttgtaa accaccagga agactccagt gtttctggtt aatttttaga tgtttgttaa ttgctcttgg tctctcatta 000640 000641 atcccctgtg ggtcatccag gaaacatact caccactgtc tgttctctga gttttcattt ccaggcatcc gccctgcctg 000720 000721 gatctcctca cctgccagga acttcctctc cacaagccgg ccatcccagc aaaagttcta acaccaaagA TGACTGCCAG 000800 000801 GGGCATGAAG GGGATGTGCT TCCAGGGCAT TTGCTGGCAG GGCGTCTCGT GATCTCTTGG TATTGGTGTG AGCACAGCCT 000880 000881 GGCAGGAGAG GGCAGATCTC CATGCAAAGT ATGTCAGAAA GCAGATGGAA GCCAGGCCCC CTCCTGAAAG AGGCTCCTTG 000960 000961 AAGGTAGGTG CACACTCATG TCTTTGTTAC TTGTAAGGGG GCATCTTACA GGCAAGAGGA GTTAGGTGAA TGTGAagagg 001040 001041 aaggaactac tctgggcagg gggctggggg acgcttcgta gaggaggggg tgtttgagct gggccttgaa ggtcaaaagg 001120 001121 gttttgttag gtgggaaatg ggggaaggac agtctgaaag ggttaggtac attcaaggag cccagagAAG GTTCGTGGCT 001200 001201 GGAGCAGACG CATTCGTAGA GTGAAGTCAT GGGAGAGAAG AGGCTGGGAA ACTAGATTGG TTCCAACTCC TAAAGGACCA 001280 001281 CTGAAGGAGT GTGGGCTGCA CGCTGGGTGC AGCAGGTGAG TTTCCTCACT TGGGTTTCAC TGTCAGCATT TTAAAAAGGC 001360 001361 AAACTGGT |
Predicted Small Protein
Name | NONHSAT138978_smProtein_308:502 |
Length | 65 |
Molecular weight | 7236.2391 |
Aromaticity | 0.09375 |
Instability index | 92.903125 |
Isoelectric point | 10.7061157227 |
Runs | 9 |
Runs residual | 0.00796875 |
Runs probability | 0.0371155469195 |
Amino acid sequence | MGGGGLMLRAQKFQGHLGRPDIQRPSRCACSMYQGRRFSQQGWCHWHDRPALAERSPVFG VQPP |
Secondary structure | LLLLHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLEEELLLLEEEEELLLHHHLLLLLLL LLLL |
PRMN | - |
PiMo | - |