Difference between revisions of "NONHSAT139163"

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sequence = <dnaseq>GCTGGGCACCGGCGCAGGTTCGCTTTCCGGCGGTTGCACCGGGCCGGGGTGCCAGCGCCCGCCTTCCCGTTTCCTCCCGTTCCGCAGCGCGCCCACGGCCTGTGACCCCGGCGACCGCTCCCCAGTGACGAGAGAGCGGGGCCGGGCGCTGCTCCGGCCTGACCTGCGAAGGGACCTCGGTCCAGTCCCCTGTTGCGCCGCGCCCCCTGTCCGTCCGTGCGCGGGCCAGTCAGGGGCCAGTGTCTCGAGCGGTCGAGGTCGCAGACCTAGAGGCGCCCCACAggccggcccggggcgctgggagcgccggccgcgggccgggTGGGGATGCCTCTGCACGTGAAGTGGCCGTTCCCCGCGGTGCCGCCGCTCACCTGGACCCTGGCCAGCAGCGTCGTCATGGGCTTGGTGGGCACCTACAGCTGCTTCTGGACCAAGTACATGAACCACCTGACCGTGCACAACAGGGAGGTGCTGTACGAGCTCATCGAGAAGCGAGGCCCGGCCACGCCCCTCATCACCGTGTCCAATCACCAGTCCTGCATGGACGACCCTCATCTCTGGGGGATCCTGAAACTCCGCCACATCTGGAACCTGAAGTTGATGCGTTGGTGAGGAGGAATGGGCCCCTCGAAGTGGGCCGGGCCGGCCCCACCTGCCTCTGCCCAGATTTGCCCTCCTCCTGCTCTGCCCAGGAGGACCCCTGCAGCTGCAGACATCTGCTTCACCAAGGAGCTACACTCCCACTTCTTCAGCTTGGGCAAGTGTGTGCCTGTGTGCCGAGGAGATGGCGTCTACCAGAAGGGGATGGACTTCATTTTGGAGAAGCTCAACCATGGGGACTGGGTGCATATCTTCCCAGAAGGTCAGCAGGGCTGACTGGGTCGAGCCCCCCCAGTATGAGCGGGATGGGCTCCCAAGCCTCGCCTCTGTGCTCTCTCACCAGGGAAAGTGAACATGAGTTCCGAATTCCTGCGTTTCAAGTGGGGTAAGGGCTGCTGGTCTCTGGCCACAGCCATCCTCCCGGCCCAGAGATGGCCCTGTGGGCCCCTGGCTCCCGCCCCCTCGGGCTGGCTTGTATGGGGGTAGATGGGCGTGTTTGTAGCGCCAGGAAGGGGACAGGTGCTGAGACTAGGCCTGCCTCTCGCAGGGGCTTGCCCAAGGGAGCTGAATTGAACTGGAGGATGTCGGGGGTGGCAGTGGCCAGAGGCTGGCACAGAAGCTTGGCTCAGGGCCCAGCTTATGCTAACATTTCTACCTCCCCCCTGGGCAGGAATCGGGCGCCTGATTGCTGAGTGTCATCTCAACCCCATCATCCTGCCCCTGTGGCATGTCGGAATGAATGACGTCCTTCCTAACAGTCCGCCCTACTTCCCCCGCTTTGGACAGAAAATCACTGTGCTGATCGGGAAGCCCTTCAGTGCCCTGCCTGTACTCGAGCGGCTCCGGGCGGAGAACAAGTCGGCTGTGGAGATGCGGAAAGCCCTGACGGACTTCATTCAAGAGGAATTCCAGCATCTGAAGACTCAGGCAGAGCAGCTCCACAACCACCTCCAGCCTGGGAGATAGGCCTTGCTTGCTGCCTTCTGGATTCTTGGCCCGCACAGAGCTGGGGCTGAGGGATGGACTGATGCTTTTAGCTCAAACGTGGCTTTTAGACAGATTTGTTCATAGACCCTCTCAAGTGCCCTCTCCGAGCTGGTAGGCATTCCAGCTCCTCCGTGCTTCCTCAGTTACACAAAGGACCTCAGCTGCTTCTCCCACTTGGCCAAGCAGGGAGGAAGAAGCTTAGGCAGGGCTCTCTTTCCTTCTTGCCTTCAGATGTTCTCTCCCAGGGGCTGGCTTCAGGAGGGAGCATAGAAGGCAGGTGAGCAACCAGTTGGCTAGGGGAGCAGGGGGCCCACCAGAGCTGTGGAGAGGGGACCCTAAGACTCCTCGGCCTGGCTCCTACCCACCGCCCTTGCCGAACCAGGAGCTGCTCACTACCTCCTCAGGGATGGCCGTTGGCCACGTCTTCCTTCTGCCTGAGCTTCCCCCCGACCACAGGCCCTTTCCTCAGGCAAGGTCTGGCCTCAGGTGGGCCGCAGGCGGGAAAAGCAGCCCTTGGCCAGAAGTCAAGCCCAGCCACGTGGAGCCTAGAGTGAGGGCCTGAGGTCTGGCTGCTTGCCCCCATGCTGGCGCCAACAACTTCTCCATCCTTTCTGCCTCTCAACATCACTTGAATC</dnaseq>|
 
sequence = <dnaseq>GCTGGGCACCGGCGCAGGTTCGCTTTCCGGCGGTTGCACCGGGCCGGGGTGCCAGCGCCCGCCTTCCCGTTTCCTCCCGTTCCGCAGCGCGCCCACGGCCTGTGACCCCGGCGACCGCTCCCCAGTGACGAGAGAGCGGGGCCGGGCGCTGCTCCGGCCTGACCTGCGAAGGGACCTCGGTCCAGTCCCCTGTTGCGCCGCGCCCCCTGTCCGTCCGTGCGCGGGCCAGTCAGGGGCCAGTGTCTCGAGCGGTCGAGGTCGCAGACCTAGAGGCGCCCCACAggccggcccggggcgctgggagcgccggccgcgggccgggTGGGGATGCCTCTGCACGTGAAGTGGCCGTTCCCCGCGGTGCCGCCGCTCACCTGGACCCTGGCCAGCAGCGTCGTCATGGGCTTGGTGGGCACCTACAGCTGCTTCTGGACCAAGTACATGAACCACCTGACCGTGCACAACAGGGAGGTGCTGTACGAGCTCATCGAGAAGCGAGGCCCGGCCACGCCCCTCATCACCGTGTCCAATCACCAGTCCTGCATGGACGACCCTCATCTCTGGGGGATCCTGAAACTCCGCCACATCTGGAACCTGAAGTTGATGCGTTGGTGAGGAGGAATGGGCCCCTCGAAGTGGGCCGGGCCGGCCCCACCTGCCTCTGCCCAGATTTGCCCTCCTCCTGCTCTGCCCAGGAGGACCCCTGCAGCTGCAGACATCTGCTTCACCAAGGAGCTACACTCCCACTTCTTCAGCTTGGGCAAGTGTGTGCCTGTGTGCCGAGGAGATGGCGTCTACCAGAAGGGGATGGACTTCATTTTGGAGAAGCTCAACCATGGGGACTGGGTGCATATCTTCCCAGAAGGTCAGCAGGGCTGACTGGGTCGAGCCCCCCCAGTATGAGCGGGATGGGCTCCCAAGCCTCGCCTCTGTGCTCTCTCACCAGGGAAAGTGAACATGAGTTCCGAATTCCTGCGTTTCAAGTGGGGTAAGGGCTGCTGGTCTCTGGCCACAGCCATCCTCCCGGCCCAGAGATGGCCCTGTGGGCCCCTGGCTCCCGCCCCCTCGGGCTGGCTTGTATGGGGGTAGATGGGCGTGTTTGTAGCGCCAGGAAGGGGACAGGTGCTGAGACTAGGCCTGCCTCTCGCAGGGGCTTGCCCAAGGGAGCTGAATTGAACTGGAGGATGTCGGGGGTGGCAGTGGCCAGAGGCTGGCACAGAAGCTTGGCTCAGGGCCCAGCTTATGCTAACATTTCTACCTCCCCCCTGGGCAGGAATCGGGCGCCTGATTGCTGAGTGTCATCTCAACCCCATCATCCTGCCCCTGTGGCATGTCGGAATGAATGACGTCCTTCCTAACAGTCCGCCCTACTTCCCCCGCTTTGGACAGAAAATCACTGTGCTGATCGGGAAGCCCTTCAGTGCCCTGCCTGTACTCGAGCGGCTCCGGGCGGAGAACAAGTCGGCTGTGGAGATGCGGAAAGCCCTGACGGACTTCATTCAAGAGGAATTCCAGCATCTGAAGACTCAGGCAGAGCAGCTCCACAACCACCTCCAGCCTGGGAGATAGGCCTTGCTTGCTGCCTTCTGGATTCTTGGCCCGCACAGAGCTGGGGCTGAGGGATGGACTGATGCTTTTAGCTCAAACGTGGCTTTTAGACAGATTTGTTCATAGACCCTCTCAAGTGCCCTCTCCGAGCTGGTAGGCATTCCAGCTCCTCCGTGCTTCCTCAGTTACACAAAGGACCTCAGCTGCTTCTCCCACTTGGCCAAGCAGGGAGGAAGAAGCTTAGGCAGGGCTCTCTTTCCTTCTTGCCTTCAGATGTTCTCTCCCAGGGGCTGGCTTCAGGAGGGAGCATAGAAGGCAGGTGAGCAACCAGTTGGCTAGGGGAGCAGGGGGCCCACCAGAGCTGTGGAGAGGGGACCCTAAGACTCCTCGGCCTGGCTCCTACCCACCGCCCTTGCCGAACCAGGAGCTGCTCACTACCTCCTCAGGGATGGCCGTTGGCCACGTCTTCCTTCTGCCTGAGCTTCCCCCCGACCACAGGCCCTTTCCTCAGGCAAGGTCTGGCCTCAGGTGGGCCGCAGGCGGGAAAAGCAGCCCTTGGCCAGAAGTCAAGCCCAGCCACGTGGAGCCTAGAGTGAGGGCCTGAGGTCTGGCTGCTTGCCCCCATGCTGGCGCCAACAACTTCTCCATCCTTTCTGCCTCTCAACATCACTTGAATC</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG055589]]
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[[Category:Sense]][[Category:NONHSAG055589]][[Category:Transcripts]]

Latest revision as of 02:53, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT139163

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2225 nt

Genomic location

chrX+:153639854..153649999

Exon number

8

Exons

153639854..153640289,153640423..153640551,153641544..153641676,153641819..153641904,153647882..153648433,153648551..153648603,153648997..153649074,153649242..153649999

Genome context

Sequence
000001 GCTGGGCACC GGCGCAGGTT CGCTTTCCGG CGGTTGCACC GGGCCGGGGT GCCAGCGCCC GCCTTCCCGT TTCCTCCCGT 000080
000081 TCCGCAGCGC GCCCACGGCC TGTGACCCCG GCGACCGCTC CCCAGTGACG AGAGAGCGGG GCCGGGCGCT GCTCCGGCCT 000160
000161 GACCTGCGAA GGGACCTCGG TCCAGTCCCC TGTTGCGCCG CGCCCCCTGT CCGTCCGTGC GCGGGCCAGT CAGGGGCCAG 000240
000241 TGTCTCGAGC GGTCGAGGTC GCAGACCTAG AGGCGCCCCA CAggccggcc cggggcgctg ggagcgccgg ccgcgggccg 000320
000321 ggTGGGGATG CCTCTGCACG TGAAGTGGCC GTTCCCCGCG GTGCCGCCGC TCACCTGGAC CCTGGCCAGC AGCGTCGTCA 000400
000401 TGGGCTTGGT GGGCACCTAC AGCTGCTTCT GGACCAAGTA CATGAACCAC CTGACCGTGC ACAACAGGGA GGTGCTGTAC 000480
000481 GAGCTCATCG AGAAGCGAGG CCCGGCCACG CCCCTCATCA CCGTGTCCAA TCACCAGTCC TGCATGGACG ACCCTCATCT 000560
000561 CTGGGGGATC CTGAAACTCC GCCACATCTG GAACCTGAAG TTGATGCGTT GGTGAGGAGG AATGGGCCCC TCGAAGTGGG 000640
000641 CCGGGCCGGC CCCACCTGCC TCTGCCCAGA TTTGCCCTCC TCCTGCTCTG CCCAGGAGGA CCCCTGCAGC TGCAGACATC 000720
000721 TGCTTCACCA AGGAGCTACA CTCCCACTTC TTCAGCTTGG GCAAGTGTGT GCCTGTGTGC CGAGGAGATG GCGTCTACCA 000800
000801 GAAGGGGATG GACTTCATTT TGGAGAAGCT CAACCATGGG GACTGGGTGC ATATCTTCCC AGAAGGTCAG CAGGGCTGAC 000880
000881 TGGGTCGAGC CCCCCCAGTA TGAGCGGGAT GGGCTCCCAA GCCTCGCCTC TGTGCTCTCT CACCAGGGAA AGTGAACATG 000960
000961 AGTTCCGAAT TCCTGCGTTT CAAGTGGGGT AAGGGCTGCT GGTCTCTGGC CACAGCCATC CTCCCGGCCC AGAGATGGCC 001040
001041 CTGTGGGCCC CTGGCTCCCG CCCCCTCGGG CTGGCTTGTA TGGGGGTAGA TGGGCGTGTT TGTAGCGCCA GGAAGGGGAC 001120
001121 AGGTGCTGAG ACTAGGCCTG CCTCTCGCAG GGGCTTGCCC AAGGGAGCTG AATTGAACTG GAGGATGTCG GGGGTGGCAG 001200
001201 TGGCCAGAGG CTGGCACAGA AGCTTGGCTC AGGGCCCAGC TTATGCTAAC ATTTCTACCT CCCCCCTGGG CAGGAATCGG 001280
001281 GCGCCTGATT GCTGAGTGTC ATCTCAACCC CATCATCCTG CCCCTGTGGC ATGTCGGAAT GAATGACGTC CTTCCTAACA 001360
001361 GTCCGCCCTA CTTCCCCCGC TTTGGACAGA AAATCACTGT GCTGATCGGG AAGCCCTTCA GTGCCCTGCC TGTACTCGAG 001440
001441 CGGCTCCGGG CGGAGAACAA GTCGGCTGTG GAGATGCGGA AAGCCCTGAC GGACTTCATT CAAGAGGAAT TCCAGCATCT 001520
001521 GAAGACTCAG GCAGAGCAGC TCCACAACCA CCTCCAGCCT GGGAGATAGG CCTTGCTTGC TGCCTTCTGG ATTCTTGGCC 001600
001601 CGCACAGAGC TGGGGCTGAG GGATGGACTG ATGCTTTTAG CTCAAACGTG GCTTTTAGAC AGATTTGTTC ATAGACCCTC 001680
001681 TCAAGTGCCC TCTCCGAGCT GGTAGGCATT CCAGCTCCTC CGTGCTTCCT CAGTTACACA AAGGACCTCA GCTGCTTCTC 001760
001761 CCACTTGGCC AAGCAGGGAG GAAGAAGCTT AGGCAGGGCT CTCTTTCCTT CTTGCCTTCA GATGTTCTCT CCCAGGGGCT 001840
001841 GGCTTCAGGA GGGAGCATAG AAGGCAGGTG AGCAACCAGT TGGCTAGGGG AGCAGGGGGC CCACCAGAGC TGTGGAGAGG 001920
001921 GGACCCTAAG ACTCCTCGGC CTGGCTCCTA CCCACCGCCC TTGCCGAACC AGGAGCTGCT CACTACCTCC TCAGGGATGG 002000
002001 CCGTTGGCCA CGTCTTCCTT CTGCCTGAGC TTCCCCCCGA CCACAGGCCC TTTCCTCAGG CAAGGTCTGG CCTCAGGTGG 002080
002081 GCCGCAGGCG GGAAAAGCAG CCCTTGGCCA GAAGTCAAGC CCAGCCACGT GGAGCCTAGA GTGAGGGCCT GAGGTCTGGC 002160
002161 TGCTTGCCCC CATGCTGGCG CCAACAACTT CTCCATCCTT TCTGCCTCTC AACATCACTT GAATC
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Predicted Small Protein

Name NONHSAT139163_smProtein_1034:1294
Length 87
Molecular weight 9016.2736
Aromaticity 0.046511627907
Instability index 65.126744186
Isoelectric point 11.3810424805
Runs 11
Runs residual 0.0117146824019
Runs probability 0.0334104157634
Amino acid sequence MALWAPGSRPLGLACMGVDGRVCSARKGTGAETRPASRRGLPKGAELNWRMSGVAVARGW
HRSLAQGPAYANISTSPLGRNRAPDC
Secondary structure LLLLLLLLLLLLEEEELLLLEEELLLLLLLLLLLLLLLLLLLLLLEEEEEEEEEEEEELL
LHHHLLLLEEEEELLLLLLLLLLLLL
PRMN -
PiMo -