Difference between revisions of "NONHSAT050228"
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sequence = <dnaseq>TACGTGTCCAGCACTGTGTTATGTGTGATCAAAGGCATGATAGAATCTAAAGGCAATTCTCAAGAGTCCTTGTCTTTAAGTGGGATGGCAACAAGATGTCTACCCTCTACCAATCTGTTATTTATTTGGAACTAATTGTTAAATCACCCTTATTCTCCACTTTTCCAGGCTAATATTTCTTTAAAGTTTTTAGCTTTTAAAGTAATTCTTAATATTCGGTTCTGTCAGTTCTTACAATTCTTACTTACAAACATATGCCTTTTAATAGCTTTAACCTAGTGCCCTTAATATTTTTCAAAGGCACCTGAGAAAAGTATAAGAATTTAAATTCATTTTATTCTAATTTTTGAAGTAGAGAGGAGGTTTTCGGTTCCACTGTGGCATTCTATAATGTCAATCAACCAAACAAAAAGCAAAGCAAACAAACACCAACCCAGCTCTTCATGTATTGGTATTAAATAGATATAATAGCGGGGCTGGACGTGGTAGCTCAGACCCATAATCCCAACACTTTGGGAGGCCGATGCAGGTGGATCACTTGAGGCCACAAGTTCGAGACCAACCTGGCCAACATGGTGAAATGTTGTCTCTACTAAAAATACAAAAATTAGCCGGGTATGGTGGCCTGCGCCTGTAATCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATCACTTAAACACGGTAGGCCAAGGTTGCAGTGAGCCAAGATGGTGCCACTGCA</dnaseq>| | sequence = <dnaseq>TACGTGTCCAGCACTGTGTTATGTGTGATCAAAGGCATGATAGAATCTAAAGGCAATTCTCAAGAGTCCTTGTCTTTAAGTGGGATGGCAACAAGATGTCTACCCTCTACCAATCTGTTATTTATTTGGAACTAATTGTTAAATCACCCTTATTCTCCACTTTTCCAGGCTAATATTTCTTTAAAGTTTTTAGCTTTTAAAGTAATTCTTAATATTCGGTTCTGTCAGTTCTTACAATTCTTACTTACAAACATATGCCTTTTAATAGCTTTAACCTAGTGCCCTTAATATTTTTCAAAGGCACCTGAGAAAAGTATAAGAATTTAAATTCATTTTATTCTAATTTTTGAAGTAGAGAGGAGGTTTTCGGTTCCACTGTGGCATTCTATAATGTCAATCAACCAAACAAAAAGCAAAGCAAACAAACACCAACCCAGCTCTTCATGTATTGGTATTAAATAGATATAATAGCGGGGCTGGACGTGGTAGCTCAGACCCATAATCCCAACACTTTGGGAGGCCGATGCAGGTGGATCACTTGAGGCCACAAGTTCGAGACCAACCTGGCCAACATGGTGAAATGTTGTCTCTACTAAAAATACAAAAATTAGCCGGGTATGGTGGCCTGCGCCTGTAATCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATCACTTAAACACGGTAGGCCAAGGTTGCAGTGAGCCAAGATGGTGCCACTGCA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG018003]] | + | [[Category:Intergenic]][[Category:NONHSAG018003]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 22:08, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT050228 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
722 nt |
| Genomic location |
chr15-:96793550..96794277 |
| Exon number |
1 |
| Exons |
96793550..96794277 |
| Genome context |
|
| Sequence |
000001 TACGTGTCCA GCACTGTGTT ATGTGTGATC AAAGGCATGA TAGAATCTAA AGGCAATTCT CAAGAGTCCT TGTCTTTAAG 000080
000081 TGGGATGGCA ACAAGATGTC TACCCTCTAC CAATCTGTTA TTTATTTGGA ACTAATTGTT AAATCACCCT TATTCTCCAC 000160 000161 TTTTCCAGGC TAATATTTCT TTAAAGTTTT TAGCTTTTAA AGTAATTCTT AATATTCGGT TCTGTCAGTT CTTACAATTC 000240 000241 TTACTTACAA ACATATGCCT TTTAATAGCT TTAACCTAGT GCCCTTAATA TTTTTCAAAG GCACCTGAGA AAAGTATAAG 000320 000321 AATTTAAATT CATTTTATTC TAATTTTTGA AGTAGAGAGG AGGTTTTCGG TTCCACTGTG GCATTCTATA ATGTCAATCA 000400 000401 ACCAAACAAA AAGCAAAGCA AACAAACACC AACCCAGCTC TTCATGTATT GGTATTAAAT AGATATAATA GCGGGGCTGG 000480 000481 ACGTGGTAGC TCAGACCCAT AATCCCAACA CTTTGGGAGG CCGATGCAGG TGGATCACTT GAGGCCACAA GTTCGAGACC 000560 000561 AACCTGGCCA ACATGGTGAA ATGTTGTCTC TACTAAAAAT ACAAAAATTA GCCGGGTATG GTGGCCTGCG CCTGTAATCC 000640 000641 CAGCTACTTG AGAGGCTGAG GCAGGAGAAT CACTTAAACA CGGTAGGCCA AGGTTGCAGT GAGCCAAGAT GGTGCCACTG 000720 000721 CA |
Predicted Small Protein
| Name | NONHSAT050228_smProtein_95:172 |
| Length | 26 |
| Molecular weight | 2834.3271 |
| Aromaticity | 0.16 |
| Instability index | 70.42 |
| Isoelectric point | 5.75250244141 |
| Runs | 4 |
| Runs residual | 0.0483018867925 |
| Runs probability | 0.0355944179474 |
| Amino acid sequence | MSTLYQSVIYLELIVKSPLFSTFPG |
| Secondary structure | LLLHHHHEEEEEEEELLLLLLLLLL |
| PRMN | - |
| PiMo | - |
