Difference between revisions of "ENST00000580854.1"
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sequence = <dnaseq>GCTCCCGCGACTCCGCTGCGGGTCTGCACACCCGAGGACTCGGTTTGAAACGCCCGCTTATTTATTTTCTTGTCGCCTCGCTACAAGATTCTATCCTTGTTTGGGCATGAGTGGGGGGCGGCAGTCTCGTGGGACCGGCGGCATTCGTCGTTCCTCCTTACGGGGATAATTCGAGAAGTGCGGTCCGGGGGTACTTAACCGAAACTAGCAATCCCAGGCGGTACAAGGCCCTCCATCGTAGGCAAAGCACTACCTGAATGTAGATTTGGGCCATACGTTGGAAAATAAGACATGAGAGTATGCTCCGATCAACTTTTACTGTTCACTGGACAACTATTTTGGGAATTTGCAGACCTATAAAGCCCATCTATAAATCTCAAGCATGTCCACTTTCAGAGAAGAGAAATGCTGACAACCATTTAGTCTCTGAGGACAACACTTTTAAAGTGTAACAATGTGGCATCCAGAGCTTATCCAGATGAGCGGAGAGCAAATGAATTTCCTTCTGCTCCCCTGTTGAAGAGGAGAGAAAAATTCTTCAAGCTGACTCCATCATAGGACTGGAGAGAGATTGGATGTCAGAGTGATTGATGTGCTCCTACTGGAAGAAGGCAAACATCCATATGTGAACTGCCTGTGGGGTTTCCAAGGAAAGGAACGGCAGGCAGCCTCTATGAGCTTAAAGAAGATAACTGGGACTTTAGTCCTATAACCTCAAGGAACAGTATTCTGTGAACCATCTGAGAAGCTTGGAAGAGGACCCCAAACTCCAAATAAGAAGCTCAGTGTG</dnaseq>| | sequence = <dnaseq>GCTCCCGCGACTCCGCTGCGGGTCTGCACACCCGAGGACTCGGTTTGAAACGCCCGCTTATTTATTTTCTTGTCGCCTCGCTACAAGATTCTATCCTTGTTTGGGCATGAGTGGGGGGCGGCAGTCTCGTGGGACCGGCGGCATTCGTCGTTCCTCCTTACGGGGATAATTCGAGAAGTGCGGTCCGGGGGTACTTAACCGAAACTAGCAATCCCAGGCGGTACAAGGCCCTCCATCGTAGGCAAAGCACTACCTGAATGTAGATTTGGGCCATACGTTGGAAAATAAGACATGAGAGTATGCTCCGATCAACTTTTACTGTTCACTGGACAACTATTTTGGGAATTTGCAGACCTATAAAGCCCATCTATAAATCTCAAGCATGTCCACTTTCAGAGAAGAGAAATGCTGACAACCATTTAGTCTCTGAGGACAACACTTTTAAAGTGTAACAATGTGGCATCCAGAGCTTATCCAGATGAGCGGAGAGCAAATGAATTTCCTTCTGCTCCCCTGTTGAAGAGGAGAGAAAAATTCTTCAAGCTGACTCCATCATAGGACTGGAGAGAGATTGGATGTCAGAGTGATTGATGTGCTCCTACTGGAAGAAGGCAAACATCCATATGTGAACTGCCTGTGGGGTTTCCAAGGAAAGGAACGGCAGGCAGCCTCTATGAGCTTAAAGAAGATAACTGGGACTTTAGTCCTATAACCTCAAGGAACAGTATTCTGTGAACCATCTGAGAAGCTTGGAAGAGGACCCCAAACTCCAAATAAGAAGCTCAGTGTG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-LIN28B-1]] | + | [[Category:Intergenic]][[Category:lnc-LIN28B-1]][[Category:NONHSAG044484]][[Category:ENSG00000203808.6]][[Category:Transcripts]] |
Latest revision as of 18:15, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000580854.1 |
| Source |
Gencode19 |
| Same with |
lnc-LIN28B-1:2,NONHSAT114209 |
| Classification |
intergenic |
| Length |
790 nt |
| Genomic location |
chr6+:105585166..105616858 |
| Exon number |
5 |
| Exons |
105585166..105585353,105585645..105585798,105595151..105595255,105602269..105602366,105616614..105616858 |
| Genome context |
|
| Sequence |
000001 GCTCCCGCGA CTCCGCTGCG GGTCTGCACA CCCGAGGACT CGGTTTGAAA CGCCCGCTTA TTTATTTTCT TGTCGCCTCG 000080
000081 CTACAAGATT CTATCCTTGT TTGGGCATGA GTGGGGGGCG GCAGTCTCGT GGGACCGGCG GCATTCGTCG TTCCTCCTTA 000160 000161 CGGGGATAAT TCGAGAAGTG CGGTCCGGGG GTACTTAACC GAAACTAGCA ATCCCAGGCG GTACAAGGCC CTCCATCGTA 000240 000241 GGCAAAGCAC TACCTGAATG TAGATTTGGG CCATACGTTG GAAAATAAGA CATGAGAGTA TGCTCCGATC AACTTTTACT 000320 000321 GTTCACTGGA CAACTATTTT GGGAATTTGC AGACCTATAA AGCCCATCTA TAAATCTCAA GCATGTCCAC TTTCAGAGAA 000400 000401 GAGAAATGCT GACAACCATT TAGTCTCTGA GGACAACACT TTTAAAGTGT AACAATGTGG CATCCAGAGC TTATCCAGAT 000480 000481 GAGCGGAGAG CAAATGAATT TCCTTCTGCT CCCCTGTTGA AGAGGAGAGA AAAATTCTTC AAGCTGACTC CATCATAGGA 000560 000561 CTGGAGAGAG ATTGGATGTC AGAGTGATTG ATGTGCTCCT ACTGGAAGAA GGCAAACATC CATATGTGAA CTGCCTGTGG 000640 000641 GGTTTCCAAG GAAAGGAACG GCAGGCAGCC TCTATGAGCT TAAAGAAGAT AACTGGGACT TTAGTCCTAT AACCTCAAGG 000720 000721 AACAGTATTC TGTGAACCAT CTGAGAAGCT TGGAAGAGGA CCCCAAACTC CAAATAAGAA GCTCAGTGTG |
Predicted Small Protein
| Name | ENST00000580854.1_smProtein_299:451 |
| Length | 51 |
| Molecular weight | 5760.6277 |
| Aromaticity | 0.08 |
| Instability index | 55.53 |
| Isoelectric point | 9.23687744141 |
| Runs | 7 |
| Runs residual | 0.0246783625731 |
| Runs probability | 0.0190400484519 |
| Amino acid sequence | MLRSTFTVHWTTILGICRPIKPIYKSQACPLSEKRNADNHLVSEDNTFKV |
| Secondary structure | LLLLLEEEEHHHEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEL |
| PRMN | - |
| PiMo | - |
