Difference between revisions of "NONHSAT141056"
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sequence = <dnaseq>TCAGCTGTGCCCTGGTGCGGGTCATTATTGTACTAGACAATTGAGTTCTTATAAAATCCTGTGAGTTGTTACTTTTTTTTGTTTTTTTCAGAATTCTTATGACAGATATTAGACATACTGAATCCAATCTTTTCCATTTTTATTTTGGGGTGTAACGTATTTTACGGCATCCTGTTTCATGGATGCAGTGGCATGTTTGTGCATTAAGACTTCACACCAATTTTGACACCCTCTTCTCATCTCCGTGCAGCTTAGATTGTCGCTTCACCTGCTTGCTAAGTCCGATGCACGCCTGCATTTTACCATGCAGAAATATGTTCAAGCCACTCATCCTCTCATGTCTCTTCACCAGTTCTTTTGTTATGCTGGCATATACCTTTGTTTTTATTTATATTCAAGTTTCCAGACATAGCATTAATGCCTTTACTTTTGTGTTTTTATTTCTGTACACTGTCTTGCTGGGTCTCTAGAGATGACTTGGCTCATCTTTAACCAGAGGTGCTGCGTGAGGGTTTTTATCAGAGACTGCAACACAAAGTCAGGTGCATGGCTTGGGTGTCTTGTTTGGGGATGTTTCTCTTTTTAGATCACTGTTTCCCATCATAACGTGTTTTTGCTACTAAAGCATCGACAGGTTTTGCTTGAAATTTTTTCCAAAAATTACCGGGTACGCCGAAACATGATCCAGTCTCGGTTGACTCAAGAGTGTGGAGAAGATCTCAGTAAACAGGAGGTGGATAAAGTACTAAAGGACTGCTGTGTAAGCTATGGTGGCATGTGGTACCTTAAAGGGACAGTACAGTCTTGACAATAGTAGCAAACTACTAACCCAGCAAATCTAAGCCCAAGGAAGAAGGGCGGAACCAGAAGTAGGGCCTCGACTTGCTTCAGACGACACAGAGCAAGAGGAACTGACCATCTCATGACCTGTGGCATTGCACGGTGCAGTGGACAGAAGGGATTATCCTCAGCCAGTCGCAGGGTCAGCTTAAGTTAGTTAGATCACTCCCAGAAGAGACCAGCTGGGACCTTCTTTGCAGTACAATTTGAAATTCCTGATGTATTTTGCTTATTATTTGGTTTCATTCTCATAATAAAGAGAGTGTATACTGACATGGGCAGGATGATAAAAATCATGGTTTAATATTTTCTTTTGTAAACTTAATGCCAACAAGGTCTAAGTTATGTTTACAACATGAAGAAAACCTCAAAGTTCTTAATTTTTAAAATGCCTAGAAGACAATATTTAGTCTTGGATTATCTATCTGCTAAGACCTCCACCAATTTCATTAAACCAAATTGAATTATTCTATTCTTGGGATTCTGTGGCCACTTCACCTTTGACAACAACCTACTTTATGTAGCAGTCTCAACTGTTTACATGAACCATAGCAAAAAAATCAGAATCAAATCCATCTCCTTTTAATGTTTGCAGAAAGATGCAAACAAAACCAGGTAAGTATGGAACAATGTGTAAGTGAGGTTATCACACTTTGATGTAAAAATTTCTATTTTGTGTATTTTTAAAATAAATGCAAACACTAAACTA</dnaseq>| | sequence = <dnaseq>TCAGCTGTGCCCTGGTGCGGGTCATTATTGTACTAGACAATTGAGTTCTTATAAAATCCTGTGAGTTGTTACTTTTTTTTGTTTTTTTCAGAATTCTTATGACAGATATTAGACATACTGAATCCAATCTTTTCCATTTTTATTTTGGGGTGTAACGTATTTTACGGCATCCTGTTTCATGGATGCAGTGGCATGTTTGTGCATTAAGACTTCACACCAATTTTGACACCCTCTTCTCATCTCCGTGCAGCTTAGATTGTCGCTTCACCTGCTTGCTAAGTCCGATGCACGCCTGCATTTTACCATGCAGAAATATGTTCAAGCCACTCATCCTCTCATGTCTCTTCACCAGTTCTTTTGTTATGCTGGCATATACCTTTGTTTTTATTTATATTCAAGTTTCCAGACATAGCATTAATGCCTTTACTTTTGTGTTTTTATTTCTGTACACTGTCTTGCTGGGTCTCTAGAGATGACTTGGCTCATCTTTAACCAGAGGTGCTGCGTGAGGGTTTTTATCAGAGACTGCAACACAAAGTCAGGTGCATGGCTTGGGTGTCTTGTTTGGGGATGTTTCTCTTTTTAGATCACTGTTTCCCATCATAACGTGTTTTTGCTACTAAAGCATCGACAGGTTTTGCTTGAAATTTTTTCCAAAAATTACCGGGTACGCCGAAACATGATCCAGTCTCGGTTGACTCAAGAGTGTGGAGAAGATCTCAGTAAACAGGAGGTGGATAAAGTACTAAAGGACTGCTGTGTAAGCTATGGTGGCATGTGGTACCTTAAAGGGACAGTACAGTCTTGACAATAGTAGCAAACTACTAACCCAGCAAATCTAAGCCCAAGGAAGAAGGGCGGAACCAGAAGTAGGGCCTCGACTTGCTTCAGACGACACAGAGCAAGAGGAACTGACCATCTCATGACCTGTGGCATTGCACGGTGCAGTGGACAGAAGGGATTATCCTCAGCCAGTCGCAGGGTCAGCTTAAGTTAGTTAGATCACTCCCAGAAGAGACCAGCTGGGACCTTCTTTGCAGTACAATTTGAAATTCCTGATGTATTTTGCTTATTATTTGGTTTCATTCTCATAATAAAGAGAGTGTATACTGACATGGGCAGGATGATAAAAATCATGGTTTAATATTTTCTTTTGTAAACTTAATGCCAACAAGGTCTAAGTTATGTTTACAACATGAAGAAAACCTCAAAGTTCTTAATTTTTAAAATGCCTAGAAGACAATATTTAGTCTTGGATTATCTATCTGCTAAGACCTCCACCAATTTCATTAAACCAAATTGAATTATTCTATTCTTGGGATTCTGTGGCCACTTCACCTTTGACAACAACCTACTTTATGTAGCAGTCTCAACTGTTTACATGAACCATAGCAAAAAAATCAGAATCAAATCCATCTCCTTTTAATGTTTGCAGAAAGATGCAAACAAAACCAGGTAAGTATGGAACAATGTGTAAGTGAGGTTATCACACTTTGATGTAAAAATTTCTATTTTGTGTATTTTTAAAATAAATGCAAACACTAAACTA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG018865]] | + | [[Category:Sense]][[Category:NONHSAG018865]][[Category:Transcripts]] |
Latest revision as of 03:01, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT141056 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1549 nt |
Genomic location |
chr16+:22342756..22345762 |
Exon number |
2 |
Exons |
22342756..22343506,22344965..22345762 |
Genome context |
|
Sequence |
000001 TCAGCTGTGC CCTGGTGCGG GTCATTATTG TACTAGACAA TTGAGTTCTT ATAAAATCCT GTGAGTTGTT ACTTTTTTTT 000080
000081 GTTTTTTTCA GAATTCTTAT GACAGATATT AGACATACTG AATCCAATCT TTTCCATTTT TATTTTGGGG TGTAACGTAT 000160 000161 TTTACGGCAT CCTGTTTCAT GGATGCAGTG GCATGTTTGT GCATTAAGAC TTCACACCAA TTTTGACACC CTCTTCTCAT 000240 000241 CTCCGTGCAG CTTAGATTGT CGCTTCACCT GCTTGCTAAG TCCGATGCAC GCCTGCATTT TACCATGCAG AAATATGTTC 000320 000321 AAGCCACTCA TCCTCTCATG TCTCTTCACC AGTTCTTTTG TTATGCTGGC ATATACCTTT GTTTTTATTT ATATTCAAGT 000400 000401 TTCCAGACAT AGCATTAATG CCTTTACTTT TGTGTTTTTA TTTCTGTACA CTGTCTTGCT GGGTCTCTAG AGATGACTTG 000480 000481 GCTCATCTTT AACCAGAGGT GCTGCGTGAG GGTTTTTATC AGAGACTGCA ACACAAAGTC AGGTGCATGG CTTGGGTGTC 000560 000561 TTGTTTGGGG ATGTTTCTCT TTTTAGATCA CTGTTTCCCA TCATAACGTG TTTTTGCTAC TAAAGCATCG ACAGGTTTTG 000640 000641 CTTGAAATTT TTTCCAAAAA TTACCGGGTA CGCCGAAACA TGATCCAGTC TCGGTTGACT CAAGAGTGTG GAGAAGATCT 000720 000721 CAGTAAACAG GAGGTGGATA AAGTACTAAA GGACTGCTGT GTAAGCTATG GTGGCATGTG GTACCTTAAA GGGACAGTAC 000800 000801 AGTCTTGACA ATAGTAGCAA ACTACTAACC CAGCAAATCT AAGCCCAAGG AAGAAGGGCG GAACCAGAAG TAGGGCCTCG 000880 000881 ACTTGCTTCA GACGACACAG AGCAAGAGGA ACTGACCATC TCATGACCTG TGGCATTGCA CGGTGCAGTG GACAGAAGGG 000960 000961 ATTATCCTCA GCCAGTCGCA GGGTCAGCTT AAGTTAGTTA GATCACTCCC AGAAGAGACC AGCTGGGACC TTCTTTGCAG 001040 001041 TACAATTTGA AATTCCTGAT GTATTTTGCT TATTATTTGG TTTCATTCTC ATAATAAAGA GAGTGTATAC TGACATGGGC 001120 001121 AGGATGATAA AAATCATGGT TTAATATTTT CTTTTGTAAA CTTAATGCCA ACAAGGTCTA AGTTATGTTT ACAACATGAA 001200 001201 GAAAACCTCA AAGTTCTTAA TTTTTAAAAT GCCTAGAAGA CAATATTTAG TCTTGGATTA TCTATCTGCT AAGACCTCCA 001280 001281 CCAATTTCAT TAAACCAAAT TGAATTATTC TATTCTTGGG ATTCTGTGGC CACTTCACCT TTGACAACAA CCTACTTTAT 001360 001361 GTAGCAGTCT CAACTGTTTA CATGAACCAT AGCAAAAAAA TCAGAATCAA ATCCATCTCC TTTTAATGTT TGCAGAAAGA 001440 001441 TGCAAACAAA ACCAGGTAAG TATGGAACAA TGTGTAAGTG AGGTTATCAC ACTTTGATGT AAAAATTTCT ATTTTGTGTA 001520 001521 TTTTTAAAAT AAATGCAAAC ACTAAACTA |
Predicted Small Protein
Name | NONHSAT141056_smProtein_182:469 |
Length | 96 |
Molecular weight | 11029.1703 |
Aromaticity | 0.168421052632 |
Instability index | 47.5221052632 |
Isoelectric point | 8.56878662109 |
Runs | 14 |
Runs residual | 0.0183174471612 |
Runs probability | 0.044735912383 |
Amino acid sequence | MQWHVCALRLHTNFDTLFSSPCSLDCRFTCLLSPMHACILPCRNMFKPLILSCLFTSSFV MLAYTFVFIYIQVSRHSINAFTFVFLFLYTVLLGL |
Secondary structure | LLEEEEEEELLLLLLLLLLLLLLLLLEEEEELLLLLEEELLHHHLLLHHHHHHHHHHHHH HHHHHHEEEEEEELLLLHHHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHH HHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHH |
PiMo | ooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTT TTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTT |