Difference between revisions of "NONHSAT141056"

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sequence = <dnaseq>TCAGCTGTGCCCTGGTGCGGGTCATTATTGTACTAGACAATTGAGTTCTTATAAAATCCTGTGAGTTGTTACTTTTTTTTGTTTTTTTCAGAATTCTTATGACAGATATTAGACATACTGAATCCAATCTTTTCCATTTTTATTTTGGGGTGTAACGTATTTTACGGCATCCTGTTTCATGGATGCAGTGGCATGTTTGTGCATTAAGACTTCACACCAATTTTGACACCCTCTTCTCATCTCCGTGCAGCTTAGATTGTCGCTTCACCTGCTTGCTAAGTCCGATGCACGCCTGCATTTTACCATGCAGAAATATGTTCAAGCCACTCATCCTCTCATGTCTCTTCACCAGTTCTTTTGTTATGCTGGCATATACCTTTGTTTTTATTTATATTCAAGTTTCCAGACATAGCATTAATGCCTTTACTTTTGTGTTTTTATTTCTGTACACTGTCTTGCTGGGTCTCTAGAGATGACTTGGCTCATCTTTAACCAGAGGTGCTGCGTGAGGGTTTTTATCAGAGACTGCAACACAAAGTCAGGTGCATGGCTTGGGTGTCTTGTTTGGGGATGTTTCTCTTTTTAGATCACTGTTTCCCATCATAACGTGTTTTTGCTACTAAAGCATCGACAGGTTTTGCTTGAAATTTTTTCCAAAAATTACCGGGTACGCCGAAACATGATCCAGTCTCGGTTGACTCAAGAGTGTGGAGAAGATCTCAGTAAACAGGAGGTGGATAAAGTACTAAAGGACTGCTGTGTAAGCTATGGTGGCATGTGGTACCTTAAAGGGACAGTACAGTCTTGACAATAGTAGCAAACTACTAACCCAGCAAATCTAAGCCCAAGGAAGAAGGGCGGAACCAGAAGTAGGGCCTCGACTTGCTTCAGACGACACAGAGCAAGAGGAACTGACCATCTCATGACCTGTGGCATTGCACGGTGCAGTGGACAGAAGGGATTATCCTCAGCCAGTCGCAGGGTCAGCTTAAGTTAGTTAGATCACTCCCAGAAGAGACCAGCTGGGACCTTCTTTGCAGTACAATTTGAAATTCCTGATGTATTTTGCTTATTATTTGGTTTCATTCTCATAATAAAGAGAGTGTATACTGACATGGGCAGGATGATAAAAATCATGGTTTAATATTTTCTTTTGTAAACTTAATGCCAACAAGGTCTAAGTTATGTTTACAACATGAAGAAAACCTCAAAGTTCTTAATTTTTAAAATGCCTAGAAGACAATATTTAGTCTTGGATTATCTATCTGCTAAGACCTCCACCAATTTCATTAAACCAAATTGAATTATTCTATTCTTGGGATTCTGTGGCCACTTCACCTTTGACAACAACCTACTTTATGTAGCAGTCTCAACTGTTTACATGAACCATAGCAAAAAAATCAGAATCAAATCCATCTCCTTTTAATGTTTGCAGAAAGATGCAAACAAAACCAGGTAAGTATGGAACAATGTGTAAGTGAGGTTATCACACTTTGATGTAAAAATTTCTATTTTGTGTATTTTTAAAATAAATGCAAACACTAAACTA</dnaseq>|
 
sequence = <dnaseq>TCAGCTGTGCCCTGGTGCGGGTCATTATTGTACTAGACAATTGAGTTCTTATAAAATCCTGTGAGTTGTTACTTTTTTTTGTTTTTTTCAGAATTCTTATGACAGATATTAGACATACTGAATCCAATCTTTTCCATTTTTATTTTGGGGTGTAACGTATTTTACGGCATCCTGTTTCATGGATGCAGTGGCATGTTTGTGCATTAAGACTTCACACCAATTTTGACACCCTCTTCTCATCTCCGTGCAGCTTAGATTGTCGCTTCACCTGCTTGCTAAGTCCGATGCACGCCTGCATTTTACCATGCAGAAATATGTTCAAGCCACTCATCCTCTCATGTCTCTTCACCAGTTCTTTTGTTATGCTGGCATATACCTTTGTTTTTATTTATATTCAAGTTTCCAGACATAGCATTAATGCCTTTACTTTTGTGTTTTTATTTCTGTACACTGTCTTGCTGGGTCTCTAGAGATGACTTGGCTCATCTTTAACCAGAGGTGCTGCGTGAGGGTTTTTATCAGAGACTGCAACACAAAGTCAGGTGCATGGCTTGGGTGTCTTGTTTGGGGATGTTTCTCTTTTTAGATCACTGTTTCCCATCATAACGTGTTTTTGCTACTAAAGCATCGACAGGTTTTGCTTGAAATTTTTTCCAAAAATTACCGGGTACGCCGAAACATGATCCAGTCTCGGTTGACTCAAGAGTGTGGAGAAGATCTCAGTAAACAGGAGGTGGATAAAGTACTAAAGGACTGCTGTGTAAGCTATGGTGGCATGTGGTACCTTAAAGGGACAGTACAGTCTTGACAATAGTAGCAAACTACTAACCCAGCAAATCTAAGCCCAAGGAAGAAGGGCGGAACCAGAAGTAGGGCCTCGACTTGCTTCAGACGACACAGAGCAAGAGGAACTGACCATCTCATGACCTGTGGCATTGCACGGTGCAGTGGACAGAAGGGATTATCCTCAGCCAGTCGCAGGGTCAGCTTAAGTTAGTTAGATCACTCCCAGAAGAGACCAGCTGGGACCTTCTTTGCAGTACAATTTGAAATTCCTGATGTATTTTGCTTATTATTTGGTTTCATTCTCATAATAAAGAGAGTGTATACTGACATGGGCAGGATGATAAAAATCATGGTTTAATATTTTCTTTTGTAAACTTAATGCCAACAAGGTCTAAGTTATGTTTACAACATGAAGAAAACCTCAAAGTTCTTAATTTTTAAAATGCCTAGAAGACAATATTTAGTCTTGGATTATCTATCTGCTAAGACCTCCACCAATTTCATTAAACCAAATTGAATTATTCTATTCTTGGGATTCTGTGGCCACTTCACCTTTGACAACAACCTACTTTATGTAGCAGTCTCAACTGTTTACATGAACCATAGCAAAAAAATCAGAATCAAATCCATCTCCTTTTAATGTTTGCAGAAAGATGCAAACAAAACCAGGTAAGTATGGAACAATGTGTAAGTGAGGTTATCACACTTTGATGTAAAAATTTCTATTTTGTGTATTTTTAAAATAAATGCAAACACTAAACTA</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG018865]]
+
[[Category:Sense]][[Category:NONHSAG018865]][[Category:Transcripts]]

Latest revision as of 03:01, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT141056

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1549 nt

Genomic location

chr16+:22342756..22345762

Exon number

2

Exons

22342756..22343506,22344965..22345762

Genome context

Sequence
000001 TCAGCTGTGC CCTGGTGCGG GTCATTATTG TACTAGACAA TTGAGTTCTT ATAAAATCCT GTGAGTTGTT ACTTTTTTTT 000080
000081 GTTTTTTTCA GAATTCTTAT GACAGATATT AGACATACTG AATCCAATCT TTTCCATTTT TATTTTGGGG TGTAACGTAT 000160
000161 TTTACGGCAT CCTGTTTCAT GGATGCAGTG GCATGTTTGT GCATTAAGAC TTCACACCAA TTTTGACACC CTCTTCTCAT 000240
000241 CTCCGTGCAG CTTAGATTGT CGCTTCACCT GCTTGCTAAG TCCGATGCAC GCCTGCATTT TACCATGCAG AAATATGTTC 000320
000321 AAGCCACTCA TCCTCTCATG TCTCTTCACC AGTTCTTTTG TTATGCTGGC ATATACCTTT GTTTTTATTT ATATTCAAGT 000400
000401 TTCCAGACAT AGCATTAATG CCTTTACTTT TGTGTTTTTA TTTCTGTACA CTGTCTTGCT GGGTCTCTAG AGATGACTTG 000480
000481 GCTCATCTTT AACCAGAGGT GCTGCGTGAG GGTTTTTATC AGAGACTGCA ACACAAAGTC AGGTGCATGG CTTGGGTGTC 000560
000561 TTGTTTGGGG ATGTTTCTCT TTTTAGATCA CTGTTTCCCA TCATAACGTG TTTTTGCTAC TAAAGCATCG ACAGGTTTTG 000640
000641 CTTGAAATTT TTTCCAAAAA TTACCGGGTA CGCCGAAACA TGATCCAGTC TCGGTTGACT CAAGAGTGTG GAGAAGATCT 000720
000721 CAGTAAACAG GAGGTGGATA AAGTACTAAA GGACTGCTGT GTAAGCTATG GTGGCATGTG GTACCTTAAA GGGACAGTAC 000800
000801 AGTCTTGACA ATAGTAGCAA ACTACTAACC CAGCAAATCT AAGCCCAAGG AAGAAGGGCG GAACCAGAAG TAGGGCCTCG 000880
000881 ACTTGCTTCA GACGACACAG AGCAAGAGGA ACTGACCATC TCATGACCTG TGGCATTGCA CGGTGCAGTG GACAGAAGGG 000960
000961 ATTATCCTCA GCCAGTCGCA GGGTCAGCTT AAGTTAGTTA GATCACTCCC AGAAGAGACC AGCTGGGACC TTCTTTGCAG 001040
001041 TACAATTTGA AATTCCTGAT GTATTTTGCT TATTATTTGG TTTCATTCTC ATAATAAAGA GAGTGTATAC TGACATGGGC 001120
001121 AGGATGATAA AAATCATGGT TTAATATTTT CTTTTGTAAA CTTAATGCCA ACAAGGTCTA AGTTATGTTT ACAACATGAA 001200
001201 GAAAACCTCA AAGTTCTTAA TTTTTAAAAT GCCTAGAAGA CAATATTTAG TCTTGGATTA TCTATCTGCT AAGACCTCCA 001280
001281 CCAATTTCAT TAAACCAAAT TGAATTATTC TATTCTTGGG ATTCTGTGGC CACTTCACCT TTGACAACAA CCTACTTTAT 001360
001361 GTAGCAGTCT CAACTGTTTA CATGAACCAT AGCAAAAAAA TCAGAATCAA ATCCATCTCC TTTTAATGTT TGCAGAAAGA 001440
001441 TGCAAACAAA ACCAGGTAAG TATGGAACAA TGTGTAAGTG AGGTTATCAC ACTTTGATGT AAAAATTTCT ATTTTGTGTA 001520
001521 TTTTTAAAAT AAATGCAAAC ACTAAACTA
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Predicted Small Protein

Name NONHSAT141056_smProtein_182:469
Length 96
Molecular weight 11029.1703
Aromaticity 0.168421052632
Instability index 47.5221052632
Isoelectric point 8.56878662109
Runs 14
Runs residual 0.0183174471612
Runs probability 0.044735912383
Amino acid sequence MQWHVCALRLHTNFDTLFSSPCSLDCRFTCLLSPMHACILPCRNMFKPLILSCLFTSSFV
MLAYTFVFIYIQVSRHSINAFTFVFLFLYTVLLGL
Secondary structure LLEEEEEEELLLLLLLLLLLLLLLLLEEEEELLLLLEEELLHHHLLLHHHHHHHHHHHHH
HHHHHHEEEEEEELLLLHHHHHHHHHHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHH
HHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHH
PiMo ooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTT
TTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTT