Difference between revisions of "NONHSAT024869"
(One intermediate revision by one other user not shown) | |||
Line 42: | Line 42: | ||
sequence = <dnaseq>GGTAACTGAATTCACCCGGTCTCCCTTCCTGCTGTCCAGGAGCTTCAGATTTGGCTATGTGTCCTTCTCTGGCTGGTTCATATGCTCACCATAACAGGAAACCTTTTCGTCATTTTCTTAACGTGGACAGATAATTGTCTCCAAACCCCAATGGACTTGTTCCTTAGAAAAAAGTCATATCGTTCTCTGGCTGCATCACCCAAATATATTTCTACTTCTTTCTAGGGACAGTGGCGTTTATCCCCTTGGCAGTGACATCCTTCAAACACTGCATGGCAACCTGTGACCCCCTGTGCAGCACCATCATTGCAAAAAGCAGGGCCTGCCTCCTGCTGGCTCTGGGATGCTGGATGGGAACCTTCCTGGCTGTGTTGCGCCTGACTATTGTGGTGTCCAGGTTGCCAGACTGTACTGAAAAAATTAGTCCCTTCTTCTGTGACATTGCCTCTTTACTGCAGGTGGCCTGTATTGATATTCATTTCATTGAGATGATAAGCTTCCTTTGATCATCTCTTATGGTCCTGACCTCGCTGGTGCTTAATGCCACATCCTACGCCTACATCATTTCTCCCTCCTGTGCATCCCCTCAGCCCAAGGATGTCAGGAGGCCTTTTCCACCTGTGCTTCACACATCACCATCATCTTTATTGCCTGCCGAAACTCCATCTCCACGTGTGTGAGGCCTAACCCGAGGTATTAG</dnaseq>| | sequence = <dnaseq>GGTAACTGAATTCACCCGGTCTCCCTTCCTGCTGTCCAGGAGCTTCAGATTTGGCTATGTGTCCTTCTCTGGCTGGTTCATATGCTCACCATAACAGGAAACCTTTTCGTCATTTTCTTAACGTGGACAGATAATTGTCTCCAAACCCCAATGGACTTGTTCCTTAGAAAAAAGTCATATCGTTCTCTGGCTGCATCACCCAAATATATTTCTACTTCTTTCTAGGGACAGTGGCGTTTATCCCCTTGGCAGTGACATCCTTCAAACACTGCATGGCAACCTGTGACCCCCTGTGCAGCACCATCATTGCAAAAAGCAGGGCCTGCCTCCTGCTGGCTCTGGGATGCTGGATGGGAACCTTCCTGGCTGTGTTGCGCCTGACTATTGTGGTGTCCAGGTTGCCAGACTGTACTGAAAAAATTAGTCCCTTCTTCTGTGACATTGCCTCTTTACTGCAGGTGGCCTGTATTGATATTCATTTCATTGAGATGATAAGCTTCCTTTGATCATCTCTTATGGTCCTGACCTCGCTGGTGCTTAATGCCACATCCTACGCCTACATCATTTCTCCCTCCTGTGCATCCCCTCAGCCCAAGGATGTCAGGAGGCCTTTTCCACCTGTGCTTCACACATCACCATCATCTTTATTGCCTGCCGAAACTCCATCTCCACGTGTGTGAGGCCTAACCCGAGGTATTAG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG009918]] | + | [[Category:Intergenic]][[Category:NONHSAG009918]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:48, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT024869 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
700 nt |
Genomic location |
chr11-:123732530..123733229 |
Exon number |
1 |
Exons |
123732530..123733229 |
Genome context |
|
Sequence |
000001 GGTAACTGAA TTCACCCGGT CTCCCTTCCT GCTGTCCAGG AGCTTCAGAT TTGGCTATGT GTCCTTCTCT GGCTGGTTCA 000080
000081 TATGCTCACC ATAACAGGAA ACCTTTTCGT CATTTTCTTA ACGTGGACAG ATAATTGTCT CCAAACCCCA ATGGACTTGT 000160 000161 TCCTTAGAAA AAAGTCATAT CGTTCTCTGG CTGCATCACC CAAATATATT TCTACTTCTT TCTAGGGACA GTGGCGTTTA 000240 000241 TCCCCTTGGC AGTGACATCC TTCAAACACT GCATGGCAAC CTGTGACCCC CTGTGCAGCA CCATCATTGC AAAAAGCAGG 000320 000321 GCCTGCCTCC TGCTGGCTCT GGGATGCTGG ATGGGAACCT TCCTGGCTGT GTTGCGCCTG ACTATTGTGG TGTCCAGGTT 000400 000401 GCCAGACTGT ACTGAAAAAA TTAGTCCCTT CTTCTGTGAC ATTGCCTCTT TACTGCAGGT GGCCTGTATT GATATTCATT 000480 000481 TCATTGAGAT GATAAGCTTC CTTTGATCAT CTCTTATGGT CCTGACCTCG CTGGTGCTTA ATGCCACATC CTACGCCTAC 000560 000561 ATCATTTCTC CCTCCTGTGC ATCCCCTCAG CCCAAGGATG TCAGGAGGCC TTTTCCACCT GTGCTTCACA CATCACCATC 000640 000641 ATCTTTATTG CCTGCCGAAA CTCCATCTCC ACGTGTGTGA GGCCTAACCC GAGGTATTAG |
Predicted Small Protein
Name | NONHSAT024869_smProtein_272:505 |
Length | 78 |
Molecular weight | 8468.2407 |
Aromaticity | 0.0779220779221 |
Instability index | 68.0207792208 |
Isoelectric point | 5.52569580078 |
Runs | 6 |
Runs residual | 0.0581592320723 |
Runs probability | 0.0522875816994 |
Amino acid sequence | MATCDPLCSTIIAKSRACLLLALGCWMGTFLAVLRLTIVVSRLPDCTEKISPFFCDIASL LQVACIDIHFIEMISFL |
Secondary structure | LLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEELLLLLLLLLLLHHHHHHHHH HHHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLHHHHH HHHHHHHHHHHHHLLLL |
PiMo | oooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiTTTTT TTTTTTTTTTTTToooo |