Difference between revisions of "ENST00000444682.1"
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sequence = <dnaseq>CAACTGACCCCTGAGGCACACCCTCTGTGCACCTCCAGATGCAGGTAGCTGGTGAGCTGAAGGCAGAGCCCCGGAGTCTGCTGGCAGGAGTTGTGGCTACAGTGCTAGCTGTCCTCGGCCTGGGTGGCTCCTGCTATGCCGTCTGGAAGATGGTGGGGCAGCGGCGGGTGCCACGGGCCCCGTAACGAAGAAGAGAGACTCTCACTTGGATGCTGGGGGGCTCGACGCTCAGCTGCTTCAGCCTGGGAGAAAGAAAAACAGGAGTTGGGAGCTGACCAGGTGAGAGCCCTATCTGCTGAGCACCCATCCATCAATCCTCTCCTTACTCCTTCATACCTTTTCTTGTGGTCTTTGGATCGGAAGTGGGTCTTCAGGTTGGTGGAATCGATGAAGTACCTCCTGTAGGAATGGAAGTGAGAAGGAGAGTGAGGAGGTGATAGTCTCCCAAGTGCACCTATCTCCCTAGCCCTAGCTTGTCCCTGACGCCAGGATCCGGGTCTGAGAAACGGGAGGCGGGCGGACCCACGGGTCCCAAGAGAGAAGACTCTGCGCTGCCTGGGGCTTCAACTTCACATCTCCCGGCCGGTACCGCGGACCCTCCTCCGCCCCAGGCCGGGCTCGTC</dnaseq>| | sequence = <dnaseq>CAACTGACCCCTGAGGCACACCCTCTGTGCACCTCCAGATGCAGGTAGCTGGTGAGCTGAAGGCAGAGCCCCGGAGTCTGCTGGCAGGAGTTGTGGCTACAGTGCTAGCTGTCCTCGGCCTGGGTGGCTCCTGCTATGCCGTCTGGAAGATGGTGGGGCAGCGGCGGGTGCCACGGGCCCCGTAACGAAGAAGAGAGACTCTCACTTGGATGCTGGGGGGCTCGACGCTCAGCTGCTTCAGCCTGGGAGAAAGAAAAACAGGAGTTGGGAGCTGACCAGGTGAGAGCCCTATCTGCTGAGCACCCATCCATCAATCCTCTCCTTACTCCTTCATACCTTTTCTTGTGGTCTTTGGATCGGAAGTGGGTCTTCAGGTTGGTGGAATCGATGAAGTACCTCCTGTAGGAATGGAAGTGAGAAGGAGAGTGAGGAGGTGATAGTCTCCCAAGTGCACCTATCTCCCTAGCCCTAGCTTGTCCCTGACGCCAGGATCCGGGTCTGAGAAACGGGAGGCGGGCGGACCCACGGGTCCCAAGAGAGAAGACTCTGCGCTGCCTGGGGCTTCAACTTCACATCTCCCGGCCGGTACCGCGGACCCTCCTCCGCCCCAGGCCGGGCTCGTC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]][[Category:lnc-TRIM63-1]][[Category:NONHSAG000753]] | + | [[Category:Antisense]][[Category:lnc-TRIM63-1]][[Category:NONHSAG000753]][[Category:ENSG00000236782.1]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 15:48, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000444682.1 |
| Source |
Gencode19 |
| Same with |
lnc-TRIM63-1:4,NONHSAT001783 |
| Classification |
antisense |
| Length |
623 nt |
| Genomic location |
chr1-:26496685..26497864 |
| Exon number |
2 |
| Exons |
26496685..26497089,26497647..26497864 |
| Genome context |
|
| Sequence |
000001 CAACTGACCC CTGAGGCACA CCCTCTGTGC ACCTCCAGAT GCAGGTAGCT GGTGAGCTGA AGGCAGAGCC CCGGAGTCTG 000080
000081 CTGGCAGGAG TTGTGGCTAC AGTGCTAGCT GTCCTCGGCC TGGGTGGCTC CTGCTATGCC GTCTGGAAGA TGGTGGGGCA 000160 000161 GCGGCGGGTG CCACGGGCCC CGTAACGAAG AAGAGAGACT CTCACTTGGA TGCTGGGGGG CTCGACGCTC AGCTGCTTCA 000240 000241 GCCTGGGAGA AAGAAAAACA GGAGTTGGGA GCTGACCAGG TGAGAGCCCT ATCTGCTGAG CACCCATCCA TCAATCCTCT 000320 000321 CCTTACTCCT TCATACCTTT TCTTGTGGTC TTTGGATCGG AAGTGGGTCT TCAGGTTGGT GGAATCGATG AAGTACCTCC 000400 000401 TGTAGGAATG GAAGTGAGAA GGAGAGTGAG GAGGTGATAG TCTCCCAAGT GCACCTATCT CCCTAGCCCT AGCTTGTCCC 000480 000481 TGACGCCAGG ATCCGGGTCT GAGAAACGGG AGGCGGGCGG ACCCACGGGT CCCAAGAGAG AAGACTCTGC GCTGCCTGGG 000560 000561 GCTTCAACTT CACATCTCCC GGCCGGTACC GCGGACCCTC CTCCGCCCCA GGCCGGGCTC GTC |
Predicted Small Protein
| Name | ENST00000444682.1_smProtein_38:184 |
| Length | 49 |
| Molecular weight | 5006.9579 |
| Aromaticity | 0.0416666666667 |
| Instability index | 52.6125 |
| Isoelectric point | 10.2844848633 |
| Runs | 7 |
| Runs residual | 0.0197368421053 |
| Runs probability | 0.0654604184016 |
| Amino acid sequence | MQVAGELKAEPRSLLAGVVATVLAVLGLGGSCYAVWKMVGQRRVPRAP |
| Secondary structure | LLLLLLLLLLLHHHHHHHHHHHHHHHLLLLHHHHHHHHHLLEELLLLL |
| PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL |
| PiMo | ooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii |
