Difference between revisions of "NONHSAT098989"
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sequence = <dnaseq>GAAGAATCTCATCAATGATACTCTCACCAGCACCTTCAATTACCTTTCTCCTCTGTATTTTCACCAAAGGTATTATGCCAACTCTCACCCTGTGAATCCACTGACTGGGGAACATTGTTTAAGAAAATCACATGGCTGTGCCAACAAGCAAGGTAGGAACGGCCATGTGGTGACCTGTGGGCTGAAGTTAAGTGTTGTGGTTTGATCATTGTGTAAGGTAGAATCAGAGCTGGGTTTTGGTTTTGTTTGCTTTAAGTTTTGGGAATTCCTTACAGGAGACACGGCACAGAAGACAGAGGCAGAAGCAGCTTTATTGAAAAACAGAGCATGAGTAGAACGACTTCAAATCCCATATGGCACCACAGTGAGAAGTAACTTCCTCTGAGCTTCTTAGAGAATCCAACAATGTCCTGCTTCCTTGGGGAGCTGCAGCCATGGGCACATGGGAATAGGGCTTCCACCAAGAGTCCCGTCAGTCACAGCAACAGGAGGTCTTCCTCAGACAACTTTGATGATAGTGGTTGTTAGCCAGAGCAAGCTAGAACCAGAAAGAAAAACTATGAAGATGCCACAGTGGGAGTCTGAGCACCTTGAGGCCTCCTGTTGGAAACTGGCAAACCTAACTGTGGGACACTTGGATGCTGAGTTCTGGTAAACATGCTGTCGGAGGCACGGTAATTTAGTCATTAACATTTAAAAACGATCTAATTCTATATACATACTCTGTTGAAGACTTCTTCCAACCACCTTGTATTATAAATTTAAAATATGAAATACAAACTCTTTATGTGTCTTGACTCAGATTACCTAGGAAGGGACAGTGACCTATTCATCAATGTTTAGAATTAGAGTAAGTTATAGAATATAGTCTGAGAAAATTACTTGGACCAagaaagcaatgtccctgacattcatcaatctagaaccagagctgcagattaagctaggtgcaaatttatcagaaaacaatatttttcccaaatacatattgcagccataaaatgccctaaaaacccagttcttagagggactattgcttacttactgagaaattgtattctctgaaatcatagactatgagatgcattgctgtttaaaattattgcaataagaatgaaacatctcactcttatctggaggagttaagtcattgtgatcagtgaagccttgatttaagctcctgtgcaaagcttcagagaatgggtctcaggacacaacatttgacatctattttgacttcatttccaagaaaataggactgctatggtttgaatgtttgtctccctcaaaccaaggtgtcggaggtggggcctaatgggagacgtttgggttatcagggagggtccctcatgaatagattaatgctctccctgggggtagggaacagttagtgagttcttgctttattcattctcaagagagctggttgttaaatagagcctggcgcctccctcctccctccttgctttctctctcaccgtatgatcttagcacattacacctcccctcaccttctgccatgagtggaagcagcctgagcctctcaccaggagcagatgctggtgccatgcttcttgtacagcccacagagcagtgagccaaataaacctcttttccttagagattgcgcagcctcagatgttcctctagagcaacacaaaatggactaagacaagaaccataggtccatttcacagtacagagctgaggttgaccccttttatacacaaccatactttcttagagcccatagaatatcatttcatttacatcacacctaaattccactctttagcaaaatcttatgttaaccctatattttcctttgtttgatgagataccccacaattgctctgttgtgcagtccccacactgcaatgagtcagtaaactcaattggtttgtttacaggttgtccctggtggttttaggctgattgggctaagacaAACCACATCTTATTTTTTAAATGTCTCCTTTAAGCAAATGTTATTATCTGTATTTTACTCTATTCCATAAGCA</dnaseq>| | sequence = <dnaseq>GAAGAATCTCATCAATGATACTCTCACCAGCACCTTCAATTACCTTTCTCCTCTGTATTTTCACCAAAGGTATTATGCCAACTCTCACCCTGTGAATCCACTGACTGGGGAACATTGTTTAAGAAAATCACATGGCTGTGCCAACAAGCAAGGTAGGAACGGCCATGTGGTGACCTGTGGGCTGAAGTTAAGTGTTGTGGTTTGATCATTGTGTAAGGTAGAATCAGAGCTGGGTTTTGGTTTTGTTTGCTTTAAGTTTTGGGAATTCCTTACAGGAGACACGGCACAGAAGACAGAGGCAGAAGCAGCTTTATTGAAAAACAGAGCATGAGTAGAACGACTTCAAATCCCATATGGCACCACAGTGAGAAGTAACTTCCTCTGAGCTTCTTAGAGAATCCAACAATGTCCTGCTTCCTTGGGGAGCTGCAGCCATGGGCACATGGGAATAGGGCTTCCACCAAGAGTCCCGTCAGTCACAGCAACAGGAGGTCTTCCTCAGACAACTTTGATGATAGTGGTTGTTAGCCAGAGCAAGCTAGAACCAGAAAGAAAAACTATGAAGATGCCACAGTGGGAGTCTGAGCACCTTGAGGCCTCCTGTTGGAAACTGGCAAACCTAACTGTGGGACACTTGGATGCTGAGTTCTGGTAAACATGCTGTCGGAGGCACGGTAATTTAGTCATTAACATTTAAAAACGATCTAATTCTATATACATACTCTGTTGAAGACTTCTTCCAACCACCTTGTATTATAAATTTAAAATATGAAATACAAACTCTTTATGTGTCTTGACTCAGATTACCTAGGAAGGGACAGTGACCTATTCATCAATGTTTAGAATTAGAGTAAGTTATAGAATATAGTCTGAGAAAATTACTTGGACCAagaaagcaatgtccctgacattcatcaatctagaaccagagctgcagattaagctaggtgcaaatttatcagaaaacaatatttttcccaaatacatattgcagccataaaatgccctaaaaacccagttcttagagggactattgcttacttactgagaaattgtattctctgaaatcatagactatgagatgcattgctgtttaaaattattgcaataagaatgaaacatctcactcttatctggaggagttaagtcattgtgatcagtgaagccttgatttaagctcctgtgcaaagcttcagagaatgggtctcaggacacaacatttgacatctattttgacttcatttccaagaaaataggactgctatggtttgaatgtttgtctccctcaaaccaaggtgtcggaggtggggcctaatgggagacgtttgggttatcagggagggtccctcatgaatagattaatgctctccctgggggtagggaacagttagtgagttcttgctttattcattctcaagagagctggttgttaaatagagcctggcgcctccctcctccctccttgctttctctctcaccgtatgatcttagcacattacacctcccctcaccttctgccatgagtggaagcagcctgagcctctcaccaggagcagatgctggtgccatgcttcttgtacagcccacagagcagtgagccaaataaacctcttttccttagagattgcgcagcctcagatgttcctctagagcaacacaaaatggactaagacaagaaccataggtccatttcacagtacagagctgaggttgaccccttttatacacaaccatactttcttagagcccatagaatatcatttcatttacatcacacctaaattccactctttagcaaaatcttatgttaaccctatattttcctttgtttgatgagataccccacaattgctctgttgtgcagtccccacactgcaatgagtcagtaaactcaattggtttgtttacaggttgtccctggtggttttaggctgattgggctaagacaAACCACATCTTATTTTTTAAATGTCTCCTTTAAGCAAATGTTATTATCTGTATTTTACTCTATTCCATAAGCA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG039208]] | + | [[Category:Intergenic]][[Category:NONHSAG039208]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 01:09, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT098989 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2021 nt |
Genomic location |
chr4+:159119871..159121985 |
Exon number |
2 |
Exons |
159119871..159120100,159120195..159121985 |
Genome context |
|
Sequence |
000001 GAAGAATCTC ATCAATGATA CTCTCACCAG CACCTTCAAT TACCTTTCTC CTCTGTATTT TCACCAAAGG TATTATGCCA 000080
000081 ACTCTCACCC TGTGAATCCA CTGACTGGGG AACATTGTTT AAGAAAATCA CATGGCTGTG CCAACAAGCA AGGTAGGAAC 000160 000161 GGCCATGTGG TGACCTGTGG GCTGAAGTTA AGTGTTGTGG TTTGATCATT GTGTAAGGTA GAATCAGAGC TGGGTTTTGG 000240 000241 TTTTGTTTGC TTTAAGTTTT GGGAATTCCT TACAGGAGAC ACGGCACAGA AGACAGAGGC AGAAGCAGCT TTATTGAAAA 000320 000321 ACAGAGCATG AGTAGAACGA CTTCAAATCC CATATGGCAC CACAGTGAGA AGTAACTTCC TCTGAGCTTC TTAGAGAATC 000400 000401 CAACAATGTC CTGCTTCCTT GGGGAGCTGC AGCCATGGGC ACATGGGAAT AGGGCTTCCA CCAAGAGTCC CGTCAGTCAC 000480 000481 AGCAACAGGA GGTCTTCCTC AGACAACTTT GATGATAGTG GTTGTTAGCC AGAGCAAGCT AGAACCAGAA AGAAAAACTA 000560 000561 TGAAGATGCC ACAGTGGGAG TCTGAGCACC TTGAGGCCTC CTGTTGGAAA CTGGCAAACC TAACTGTGGG ACACTTGGAT 000640 000641 GCTGAGTTCT GGTAAACATG CTGTCGGAGG CACGGTAATT TAGTCATTAA CATTTAAAAA CGATCTAATT CTATATACAT 000720 000721 ACTCTGTTGA AGACTTCTTC CAACCACCTT GTATTATAAA TTTAAAATAT GAAATACAAA CTCTTTATGT GTCTTGACTC 000800 000801 AGATTACCTA GGAAGGGACA GTGACCTATT CATCAATGTT TAGAATTAGA GTAAGTTATA GAATATAGTC TGAGAAAATT 000880 000881 ACTTGGACCA agaaagcaat gtccctgaca ttcatcaatc tagaaccaga gctgcagatt aagctaggtg caaatttatc 000960 000961 agaaaacaat atttttccca aatacatatt gcagccataa aatgccctaa aaacccagtt cttagaggga ctattgctta 001040 001041 cttactgaga aattgtattc tctgaaatca tagactatga gatgcattgc tgtttaaaat tattgcaata agaatgaaac 001120 001121 atctcactct tatctggagg agttaagtca ttgtgatcag tgaagccttg atttaagctc ctgtgcaaag cttcagagaa 001200 001201 tgggtctcag gacacaacat ttgacatcta ttttgacttc atttccaaga aaataggact gctatggttt gaatgtttgt 001280 001281 ctccctcaaa ccaaggtgtc ggaggtgggg cctaatggga gacgtttggg ttatcaggga gggtccctca tgaatagatt 001360 001361 aatgctctcc ctgggggtag ggaacagtta gtgagttctt gctttattca ttctcaagag agctggttgt taaatagagc 001440 001441 ctggcgcctc cctcctccct ccttgctttc tctctcaccg tatgatctta gcacattaca cctcccctca ccttctgcca 001520 001521 tgagtggaag cagcctgagc ctctcaccag gagcagatgc tggtgccatg cttcttgtac agcccacaga gcagtgagcc 001600 001601 aaataaacct cttttcctta gagattgcgc agcctcagat gttcctctag agcaacacaa aatggactaa gacaagaacc 001680 001681 ataggtccat ttcacagtac agagctgagg ttgacccctt ttatacacaa ccatactttc ttagagccca tagaatatca 001760 001761 tttcatttac atcacaccta aattccactc tttagcaaaa tcttatgtta accctatatt ttcctttgtt tgatgagata 001840 001841 ccccacaatt gctctgttgt gcagtcccca cactgcaatg agtcagtaaa ctcaattggt ttgtttacag gttgtccctg 001920 001921 gtggttttag gctgattggg ctaagacaAA CCACATCTTA TTTTTTAAAT GTCTCCTTTA AGCAAATGTT ATTATCTGTA 002000 002001 TTTTACTCTA TTCCATAAGC A |
Predicted Small Protein
Name | NONHSAT098989_smProtein_1556:1669 |
Length | 38 |
Molecular weight | 4207.8257 |
Aromaticity | 0.0810810810811 |
Instability index | 92.6594594595 |
Isoelectric point | 4.95281982422 |
Runs | 7 |
Runs residual | 0.009422266303 |
Runs probability | 0.0394049511698 |
Amino acid sequence | MLVPCFLYSPQSSEPNKPLFLRDCAASDVPLEQHKMD |
Secondary structure | LLLEEELLLLLLLLLLLLLLHHHHHLLLLLHHHHLLL |
PRMN | - |
PiMo | - |