Difference between revisions of "NONHSAT099038"
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sequence = <dnaseq>CCATAGAATGTGAATTTCAGAGGCACATTAAGCCTAGTGAAAAGCTCCTTGGATTTCAGTTGTACACATGATTTCATCTTGTCACCTGGAGTATGAACTTCAAGCAAATAGAATTCTATTTCAGACTTATGGATTCAGAAGTCAAACTGAAAAGGAGTTTGGAAAAATGTTTAAAATTACAGGCTCAAAAACAAGCTTTCCCAAGATTACCAACTTTGTCACTCTTCTGGTTTTCTACTACTGTTCCATCCTTATCTATCACTCTTTTATTCTTTGATACTTTTACATTCAGCCACCTTCTTTGCTTGTTATAGATCTAGCTGCTGCTTTTCACATATGCCATGGTATTACTTATTATTTAATGGGTCCTAAAATAACTTTAAAGAAAACCACGTGTCTTATTA</dnaseq>| | sequence = <dnaseq>CCATAGAATGTGAATTTCAGAGGCACATTAAGCCTAGTGAAAAGCTCCTTGGATTTCAGTTGTACACATGATTTCATCTTGTCACCTGGAGTATGAACTTCAAGCAAATAGAATTCTATTTCAGACTTATGGATTCAGAAGTCAAACTGAAAAGGAGTTTGGAAAAATGTTTAAAATTACAGGCTCAAAAACAAGCTTTCCCAAGATTACCAACTTTGTCACTCTTCTGGTTTTCTACTACTGTTCCATCCTTATCTATCACTCTTTTATTCTTTGATACTTTTACATTCAGCCACCTTCTTTGCTTGTTATAGATCTAGCTGCTGCTTTTCACATATGCCATGGTATTACTTATTATTTAATGGGTCCTAAAATAACTTTAAAGAAAACCACGTGTCTTATTA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG039235]] | + | [[Category:Sense]][[Category:NONHSAG039235]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 01:09, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT099038 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
404 nt |
Genomic location |
chr4-:162416288..162421226 |
Exon number |
2 |
Exons |
162416288..162416632,162421168..162421226 |
Genome context |
|
Sequence |
000001 CCATAGAATG TGAATTTCAG AGGCACATTA AGCCTAGTGA AAAGCTCCTT GGATTTCAGT TGTACACATG ATTTCATCTT 000080
000081 GTCACCTGGA GTATGAACTT CAAGCAAATA GAATTCTATT TCAGACTTAT GGATTCAGAA GTCAAACTGA AAAGGAGTTT 000160 000161 GGAAAAATGT TTAAAATTAC AGGCTCAAAA ACAAGCTTTC CCAAGATTAC CAACTTTGTC ACTCTTCTGG TTTTCTACTA 000240 000241 CTGTTCCATC CTTATCTATC ACTCTTTTAT TCTTTGATAC TTTTACATTC AGCCACCTTC TTTGCTTGTT ATAGATCTAG 000320 000321 CTGCTGCTTT TCACATATGC CATGGTATTA CTTATTATTT AATGGGTCCT AAAATAACTT TAAAGAAAAC CACGTGTCTT 000400 000401 ATTA |
Predicted Small Protein
Name | NONHSAT099038_smProtein_92:313 |
Length | 74 |
Molecular weight | 8698.2877 |
Aromaticity | 0.164383561644 |
Instability index | 55.6973972603 |
Isoelectric point | 9.44464111328 |
Runs | 11 |
Runs residual | 0.00653999116217 |
Runs probability | 0.03822003822 |
Amino acid sequence | MNFKQIEFYFRLMDSEVKLKRSLEKCLKLQAQKQAFPRLPTLSLFWFSTTVPSLSITLLF FDTFTFSHLLCLL |
Secondary structure | LLHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHLLLLLLLEEEELLLLLLHHHHLHHH HHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHH HHHHHHLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTT TTTTTTooooooo |