Difference between revisions of "NONHSAT025928"
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sequence = <dnaseq>TGGCTAGTGTTTCTGACACATTAGTCCTGACTAATGACAACAGGAAGATAATTAACTCTGATTTTGATATATTACATTTGAAAAGACTTCTCTAGATGGCAAGGAGCTCAAGAGAAAAATCATGGCTAGAAATATAGATGTAAAAGCCACCTTTAGATAAGTGGTTGTTAAAGCTATAGAAGTGGCTTCTATAAAGCTATAGAAGTTCACCCAGGATAAGTGTGGAAAGTGTTGAGAGGCCAAGGATGGAACCTTGAAGAATGCTAATATCCAAGAATATGCAGAAGAGGAGGAAGCAGCTGTTTCTAACTCGTACCATTTCTGATGTTAGCCAGCCCTTCCAATCTTACAGCCCTCAGTGGGAAAAAGGTAGTCTATTAGAATTCATTATCGTGTCCCTAGCTTTGGGACAATCCTGCCTCGAGCACTAGCTGGCTGTGACCTCTCTGTACTTCAGTTTCCTTATCAGTAAAAGTACCTGTCTCTCAGAGCTGTTGTGATGGTGAAGTGAGTTAACCTATGTAGAGGGCACAGGACGCAGCCTGGGCTATAATAAGTACTGTATATCTAACTGTATAGTCTGGCACTGAGTAGGCTTAATAAATGTCTGCGAAGGAATAGCAGCATTCCATCATTCACCTGTAATAATCTCTTTGTGGTATCATCACTACTAGATCAAAAAGGTAGGGATAAATTTCTGGAGGAAAAAACGTTGTAGATAGTTGGAATGATTGACCAAGGAGGGAGTGAAATATTTTGGGGGAGGTTCTTATGAACATATTGACTCTCCTCAGTCAGGATTCCCATGTATAGTCCTGCATATTAGAATACAGGAAGGATACCCGTATAATATTTAGGATATACTTATATTAAGAAATTATTTGTGATTTTTCTGAAATTCAAACTTAACTGGGTATATTCTAGCCACTCTATCTCCATTTTACAGATGAGGACAATCAGAGTTCAAGCAAGGGACAGAAATCACCGCAGAAATTTGGACAGGGAAAATTTAATATAAAGAATTGTTGACTATGTAAAGTTCTGTTAACTACTGAAAGGGGAAAAAGAACTCTAAGAAGCAGCAAGGCAGTTAACTGCAGAAAGTGGCTTCTACACCTAAGACTAAGGGAAAAATGAACAAGGAAGGAACTTACAAACTATTGGAAAAGGTCCCTGCAAGGCTGGATTCAGACCTCTGAGGAGAGTTCCTGGTTGTTACAGGAACATGCTGCCTGTAGTCCTGGTGCCAAGGAAACTTGCTGAAGGGTACCCGCTGTTAAACTGCATAGGGCAGCCTGCCACTGCTGTAAACCCTGACCGGGATAACCGCGTGCCGATCTGCCTGCCACTATATGGGAAAACAGAAAACTAGATGAAGAAGAAAAAGGCCTCTGTCTTCCAGCCATGCATTGTTCCTTCCACACTCCTTATTGTCAAAGCCTAACATGGAGCCAGCTGGCAAAGGAAAAGTGTGGCCTGTAGAGTTCAGCCCCAGTATTACAAAGCAGGATGAAGAAACTGGGATTGGAGCTGAAAGACAATAAATTAATAACTGATACAGATGGAAAGTACATTTTTCAACCCAAGGATAGAAAGAAGCCCCAAACATCATCACACAAAAGGAAGACAGATTGGCTGAGAGAGGCATTTACATTAAAAAAATAAAATACTGAAGGTTTACAGGGACACATCTCTTGGAGTAGAGCAGCCTACCTCCAAGGTATTGGATAAGCAAGACAAGGTGTTATAAAGCCTATTGTGTAAATATATACAGAAGACTGAGAGGTTTTCAACCGAATAAATGAATGCCTGGTACAGCGTTAATATAGCTGAGAAATTCATCCTGTAACAAGTTGA</dnaseq>| | sequence = <dnaseq>TGGCTAGTGTTTCTGACACATTAGTCCTGACTAATGACAACAGGAAGATAATTAACTCTGATTTTGATATATTACATTTGAAAAGACTTCTCTAGATGGCAAGGAGCTCAAGAGAAAAATCATGGCTAGAAATATAGATGTAAAAGCCACCTTTAGATAAGTGGTTGTTAAAGCTATAGAAGTGGCTTCTATAAAGCTATAGAAGTTCACCCAGGATAAGTGTGGAAAGTGTTGAGAGGCCAAGGATGGAACCTTGAAGAATGCTAATATCCAAGAATATGCAGAAGAGGAGGAAGCAGCTGTTTCTAACTCGTACCATTTCTGATGTTAGCCAGCCCTTCCAATCTTACAGCCCTCAGTGGGAAAAAGGTAGTCTATTAGAATTCATTATCGTGTCCCTAGCTTTGGGACAATCCTGCCTCGAGCACTAGCTGGCTGTGACCTCTCTGTACTTCAGTTTCCTTATCAGTAAAAGTACCTGTCTCTCAGAGCTGTTGTGATGGTGAAGTGAGTTAACCTATGTAGAGGGCACAGGACGCAGCCTGGGCTATAATAAGTACTGTATATCTAACTGTATAGTCTGGCACTGAGTAGGCTTAATAAATGTCTGCGAAGGAATAGCAGCATTCCATCATTCACCTGTAATAATCTCTTTGTGGTATCATCACTACTAGATCAAAAAGGTAGGGATAAATTTCTGGAGGAAAAAACGTTGTAGATAGTTGGAATGATTGACCAAGGAGGGAGTGAAATATTTTGGGGGAGGTTCTTATGAACATATTGACTCTCCTCAGTCAGGATTCCCATGTATAGTCCTGCATATTAGAATACAGGAAGGATACCCGTATAATATTTAGGATATACTTATATTAAGAAATTATTTGTGATTTTTCTGAAATTCAAACTTAACTGGGTATATTCTAGCCACTCTATCTCCATTTTACAGATGAGGACAATCAGAGTTCAAGCAAGGGACAGAAATCACCGCAGAAATTTGGACAGGGAAAATTTAATATAAAGAATTGTTGACTATGTAAAGTTCTGTTAACTACTGAAAGGGGAAAAAGAACTCTAAGAAGCAGCAAGGCAGTTAACTGCAGAAAGTGGCTTCTACACCTAAGACTAAGGGAAAAATGAACAAGGAAGGAACTTACAAACTATTGGAAAAGGTCCCTGCAAGGCTGGATTCAGACCTCTGAGGAGAGTTCCTGGTTGTTACAGGAACATGCTGCCTGTAGTCCTGGTGCCAAGGAAACTTGCTGAAGGGTACCCGCTGTTAAACTGCATAGGGCAGCCTGCCACTGCTGTAAACCCTGACCGGGATAACCGCGTGCCGATCTGCCTGCCACTATATGGGAAAACAGAAAACTAGATGAAGAAGAAAAAGGCCTCTGTCTTCCAGCCATGCATTGTTCCTTCCACACTCCTTATTGTCAAAGCCTAACATGGAGCCAGCTGGCAAAGGAAAAGTGTGGCCTGTAGAGTTCAGCCCCAGTATTACAAAGCAGGATGAAGAAACTGGGATTGGAGCTGAAAGACAATAAATTAATAACTGATACAGATGGAAAGTACATTTTTCAACCCAAGGATAGAAAGAAGCCCCAAACATCATCACACAAAAGGAAGACAGATTGGCTGAGAGAGGCATTTACATTAAAAAAATAAAATACTGAAGGTTTACAGGGACACATCTCTTGGAGTAGAGCAGCCTACCTCCAAGGTATTGGATAAGCAAGACAAGGTGTTATAAAGCCTATTGTGTAAATATATACAGAAGACTGAGAGGTTTTCAACCGAATAAATGAATGCCTGGTACAGCGTTAATATAGCTGAGAAATTCATCCTGTAACAAGTTGA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG010226]] | + | [[Category:Intergenic]][[Category:NONHSAG010226]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:51, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT025928 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1857 nt |
| Genomic location |
chr12-:3900217..3910010 |
| Exon number |
4 |
| Exons |
3900217..3901118,3901331..3901460,3903417..3903831,3909601..3910010 |
| Genome context |
|
| Sequence |
000001 TGGCTAGTGT TTCTGACACA TTAGTCCTGA CTAATGACAA CAGGAAGATA ATTAACTCTG ATTTTGATAT ATTACATTTG 000080
000081 AAAAGACTTC TCTAGATGGC AAGGAGCTCA AGAGAAAAAT CATGGCTAGA AATATAGATG TAAAAGCCAC CTTTAGATAA 000160 000161 GTGGTTGTTA AAGCTATAGA AGTGGCTTCT ATAAAGCTAT AGAAGTTCAC CCAGGATAAG TGTGGAAAGT GTTGAGAGGC 000240 000241 CAAGGATGGA ACCTTGAAGA ATGCTAATAT CCAAGAATAT GCAGAAGAGG AGGAAGCAGC TGTTTCTAAC TCGTACCATT 000320 000321 TCTGATGTTA GCCAGCCCTT CCAATCTTAC AGCCCTCAGT GGGAAAAAGG TAGTCTATTA GAATTCATTA TCGTGTCCCT 000400 000401 AGCTTTGGGA CAATCCTGCC TCGAGCACTA GCTGGCTGTG ACCTCTCTGT ACTTCAGTTT CCTTATCAGT AAAAGTACCT 000480 000481 GTCTCTCAGA GCTGTTGTGA TGGTGAAGTG AGTTAACCTA TGTAGAGGGC ACAGGACGCA GCCTGGGCTA TAATAAGTAC 000560 000561 TGTATATCTA ACTGTATAGT CTGGCACTGA GTAGGCTTAA TAAATGTCTG CGAAGGAATA GCAGCATTCC ATCATTCACC 000640 000641 TGTAATAATC TCTTTGTGGT ATCATCACTA CTAGATCAAA AAGGTAGGGA TAAATTTCTG GAGGAAAAAA CGTTGTAGAT 000720 000721 AGTTGGAATG ATTGACCAAG GAGGGAGTGA AATATTTTGG GGGAGGTTCT TATGAACATA TTGACTCTCC TCAGTCAGGA 000800 000801 TTCCCATGTA TAGTCCTGCA TATTAGAATA CAGGAAGGAT ACCCGTATAA TATTTAGGAT ATACTTATAT TAAGAAATTA 000880 000881 TTTGTGATTT TTCTGAAATT CAAACTTAAC TGGGTATATT CTAGCCACTC TATCTCCATT TTACAGATGA GGACAATCAG 000960 000961 AGTTCAAGCA AGGGACAGAA ATCACCGCAG AAATTTGGAC AGGGAAAATT TAATATAAAG AATTGTTGAC TATGTAAAGT 001040 001041 TCTGTTAACT ACTGAAAGGG GAAAAAGAAC TCTAAGAAGC AGCAAGGCAG TTAACTGCAG AAAGTGGCTT CTACACCTAA 001120 001121 GACTAAGGGA AAAATGAACA AGGAAGGAAC TTACAAACTA TTGGAAAAGG TCCCTGCAAG GCTGGATTCA GACCTCTGAG 001200 001201 GAGAGTTCCT GGTTGTTACA GGAACATGCT GCCTGTAGTC CTGGTGCCAA GGAAACTTGC TGAAGGGTAC CCGCTGTTAA 001280 001281 ACTGCATAGG GCAGCCTGCC ACTGCTGTAA ACCCTGACCG GGATAACCGC GTGCCGATCT GCCTGCCACT ATATGGGAAA 001360 001361 ACAGAAAACT AGATGAAGAA GAAAAAGGCC TCTGTCTTCC AGCCATGCAT TGTTCCTTCC ACACTCCTTA TTGTCAAAGC 001440 001441 CTAACATGGA GCCAGCTGGC AAAGGAAAAG TGTGGCCTGT AGAGTTCAGC CCCAGTATTA CAAAGCAGGA TGAAGAAACT 001520 001521 GGGATTGGAG CTGAAAGACA ATAAATTAAT AACTGATACA GATGGAAAGT ACATTTTTCA ACCCAAGGAT AGAAAGAAGC 001600 001601 CCCAAACATC ATCACACAAA AGGAAGACAG ATTGGCTGAG AGAGGCATTT ACATTAAAAA AATAAAATAC TGAAGGTTTA 001680 001681 CAGGGACACA TCTCTTGGAG TAGAGCAGCC TACCTCCAAG GTATTGGATA AGCAAGACAA GGTGTTATAA AGCCTATTGT 001760 001761 GTAAATATAT ACAGAAGACT GAGAGGTTTT CAACCGAATA AATGAATGCC TGGTACAGCG TTAATATAGC TGAGAAATTC 001840 001841 ATCCTGTAAC AAGTTGA |
Predicted Small Protein
| Name | NONHSAT025928_smProtein_260:430 |
| Length | 57 |
| Molecular weight | 6512.5378 |
| Aromaticity | 0.0892857142857 |
| Instability index | 70.925 |
| Isoelectric point | 9.51287841797 |
| Runs | 8 |
| Runs residual | 0.0104410616706 |
| Runs probability | 0.0323374845434 |
| Amino acid sequence | MLISKNMQKRRKQLFLTRTISDVSQPFQSYSPQWEKGSLLEFIIVSLALGQSCLEH |
| Secondary structure | LLLLHHHHHHHHHHHEEEEEELLLLLLLLLLLLLLLLHHHHHHHHHHHHLLHHHLL |
| PRMN | - |
| PiMo | - |