Difference between revisions of "ENST00000532116.3"

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sequence = <dnaseq>AGAAAATGGGCCCTCTTGGCCGTCGGGACTTGTACTGTTGGTGACTCCGTCTCCTTAGACGGTGGAGCCTGCGTGACCCAGAAAGGCCGCCTCGGGACCCAGACCAGGATTTCCATCAGCTCCCCTGGCTCGCAGGCCTTCTGACTTCTGACTCACCATCAGCTCTCCTGGATCCAGCTTGCCAATGGCAGATCGTGGGACTCCTTGCCCTCTAATCGCATGAAACAATGCCCACAGTTGATTCCAGATCCTGGCTACTGTGCATAGTGCTGCAGTCAACATGGGAGTGCCGATATCTCTTCAATATACTGATTTCCTTTTCCTTGGGTATCTACCTAACAAGATGGTGAGCTCCTTAGAGGGAAGTATAGTACATATTTCCTCCATGTCTCCAGTACCCAACACAGTGCCTGACGTTGAGAGGGCTCTTAATAAGTGTTTGTGAAAGACTGGTAGAGCAATGCCCTATGAAACAAGAAGCTGGATAACACTGCTTAGGACTCAGAGGAGAGAGGAGTGTGGTCTACACTGCACATCTCTGCCAAGCCTGGCACGGGATTTGAAGTTCCACACCACTGAGCCAAACACATCCAGACCCTCTTCCAACCCGGGGATCTGGTGGTAAGCAAAATACTATTCCAGCAAGTGATGCCCCCAGTCTCCTAAGGA</dnaseq>|
 
sequence = <dnaseq>AGAAAATGGGCCCTCTTGGCCGTCGGGACTTGTACTGTTGGTGACTCCGTCTCCTTAGACGGTGGAGCCTGCGTGACCCAGAAAGGCCGCCTCGGGACCCAGACCAGGATTTCCATCAGCTCCCCTGGCTCGCAGGCCTTCTGACTTCTGACTCACCATCAGCTCTCCTGGATCCAGCTTGCCAATGGCAGATCGTGGGACTCCTTGCCCTCTAATCGCATGAAACAATGCCCACAGTTGATTCCAGATCCTGGCTACTGTGCATAGTGCTGCAGTCAACATGGGAGTGCCGATATCTCTTCAATATACTGATTTCCTTTTCCTTGGGTATCTACCTAACAAGATGGTGAGCTCCTTAGAGGGAAGTATAGTACATATTTCCTCCATGTCTCCAGTACCCAACACAGTGCCTGACGTTGAGAGGGCTCTTAATAAGTGTTTGTGAAAGACTGGTAGAGCAATGCCCTATGAAACAAGAAGCTGGATAACACTGCTTAGGACTCAGAGGAGAGAGGAGTGTGGTCTACACTGCACATCTCTGCCAAGCCTGGCACGGGATTTGAAGTTCCACACCACTGAGCCAAACACATCCAGACCCTCTTCCAACCCGGGGATCTGGTGGTAAGCAAAATACTATTCCAGCAAGTGATGCCCCCAGTCTCCTAAGGA</dnaseq>|
 
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[[Category:Intergenic]][[Category:ENSG00000175773.8]][[Category:NONHSAG010047]]
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[[Category:Intergenic]][[Category:ENSG00000175773.8]][[Category:NONHSAG010047]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 17:12, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000532116.3

Source

Gencode19

Same with

NONHSAT140043

Classification

intergenic

Length

669 nt

Genomic location

chr11+:130184923..130263688

Exon number

6

Exons

130184923..130185010,130193809..130193956,130203759..130203865,130238789..130238937,130263390..130263491,130263614..130263688

Genome context

Sequence
000001 AGAAAATGGG CCCTCTTGGC CGTCGGGACT TGTACTGTTG GTGACTCCGT CTCCTTAGAC GGTGGAGCCT GCGTGACCCA 000080
000081 GAAAGGCCGC CTCGGGACCC AGACCAGGAT TTCCATCAGC TCCCCTGGCT CGCAGGCCTT CTGACTTCTG ACTCACCATC 000160
000161 AGCTCTCCTG GATCCAGCTT GCCAATGGCA GATCGTGGGA CTCCTTGCCC TCTAATCGCA TGAAACAATG CCCACAGTTG 000240
000241 ATTCCAGATC CTGGCTACTG TGCATAGTGC TGCAGTCAAC ATGGGAGTGC CGATATCTCT TCAATATACT GATTTCCTTT 000320
000321 TCCTTGGGTA TCTACCTAAC AAGATGGTGA GCTCCTTAGA GGGAAGTATA GTACATATTT CCTCCATGTC TCCAGTACCC 000400
000401 AACACAGTGC CTGACGTTGA GAGGGCTCTT AATAAGTGTT TGTGAAAGAC TGGTAGAGCA ATGCCCTATG AAACAAGAAG 000480
000481 CTGGATAACA CTGCTTAGGA CTCAGAGGAG AGAGGAGTGT GGTCTACACT GCACATCTCT GCCAAGCCTG GCACGGGATT 000560
000561 TGAAGTTCCA CACCACTGAG CCAAACACAT CCAGACCCTC TTCCAACCCG GGGATCTGGT GGTAAGCAAA ATACTATTCC 000640
000641 AGCAAGTGAT GCCCCCAGTC TCCTAAGGA
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Predicted Small Protein

Name ENST00000532116.3_smProtein_227:349
Length 41
Molecular weight 4825.6714
Aromaticity 0.175
Instability index 91.03
Isoelectric point 7.81085205078
Runs 8
Runs residual 0.0219758064516
Runs probability 0.0280758699877
Amino acid sequence MPTVDSRSWLLCIVLQSTWECRYLFNILISFSLGIYLTRW
Secondary structure LLLLLLLLEEEHHHHHLLHHHHHHHHHHHHHHLLLEEEEL
PRMN LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLL
PiMo oooooooooooooooooTTTTTTTTTTTTTTTTTTTiiii