Difference between revisions of "NONHSAT026362"
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sequence = <dnaseq>TTGAAATGTTTTTAGTTTTGTTTTGGATTTTTGTGTGGTATTTTATTTCCTTTATACCAATGCCATTTTGCCATGCTGTTTTGGGGTGGCTGCCTAACTCTAGTGAAAATTCTTTCTATATTAATGAAAGTTTGGCCTTTGAAGATCCTTAATGTTTTGCATTTTTTACATTGTTTTTAAAGAAATATTCTAACTGCTTGCACTGTTACTGTTCTTTACCAGCCTTTTCAGGAGCCAAAAAAACAAATACAAACAAACAAAAAAATACCCAGAGAAAAAACTTTCCTTCTTCCCCCTTCCTGATGATGAGTGAGAAGTATTGAGAACTTTCGGGGTCAGTGCCCTTCTAAACTCCCCTTCCCCCAATAATGCAGCTGTATAATGAATGGTAAATGCACCGGTTTGGATTCAGGCACAGCCCCAGTCTGCCTACAGCAGACAACTAAACTGGTAGGTGGCAGCAGAGGAAGGAATTCTTCAGATTGATGGCTACTGACTTAAAGTCTGCATAGGAGAAGAGATAGAGCATGACATACCAAGTGAAGCAAGGGGGACAAAAATGGAAACAGGACTAAGATTCCTGCATTTTGACTCTAAATGGTTCTTTTGAAGTAACCAGTGATCTTTTTTGCTTACCCTCATCAACAGAATGGATGAAGATAGATTTGACTGTGTGCTTTTTCAAGTGGAGAATATGAATATACAGAACAAGAAAGCAATAACTCCAACCTGTTTGATTCCGTCTGTTTTCTAAATAAAGACACTATGCGCTGG</dnaseq>| | sequence = <dnaseq>TTGAAATGTTTTTAGTTTTGTTTTGGATTTTTGTGTGGTATTTTATTTCCTTTATACCAATGCCATTTTGCCATGCTGTTTTGGGGTGGCTGCCTAACTCTAGTGAAAATTCTTTCTATATTAATGAAAGTTTGGCCTTTGAAGATCCTTAATGTTTTGCATTTTTTACATTGTTTTTAAAGAAATATTCTAACTGCTTGCACTGTTACTGTTCTTTACCAGCCTTTTCAGGAGCCAAAAAAACAAATACAAACAAACAAAAAAATACCCAGAGAAAAAACTTTCCTTCTTCCCCCTTCCTGATGATGAGTGAGAAGTATTGAGAACTTTCGGGGTCAGTGCCCTTCTAAACTCCCCTTCCCCCAATAATGCAGCTGTATAATGAATGGTAAATGCACCGGTTTGGATTCAGGCACAGCCCCAGTCTGCCTACAGCAGACAACTAAACTGGTAGGTGGCAGCAGAGGAAGGAATTCTTCAGATTGATGGCTACTGACTTAAAGTCTGCATAGGAGAAGAGATAGAGCATGACATACCAAGTGAAGCAAGGGGGACAAAAATGGAAACAGGACTAAGATTCCTGCATTTTGACTCTAAATGGTTCTTTTGAAGTAACCAGTGATCTTTTTTGCTTACCCTCATCAACAGAATGGATGAAGATAGATTTGACTGTGTGCTTTTTCAAGTGGAGAATATGAATATACAGAACAAGAAAGCAATAACTCCAACCTGTTTGATTCCGTCTGTTTTCTAAATAAAGACACTATGCGCTGG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG010420]] | + | [[Category:Intergenic]][[Category:NONHSAG010420]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:53, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT026362 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
774 nt |
Genomic location |
chr12+:8929964..8935681 |
Exon number |
3 |
Exons |
8929964..8930398,8933171..8933335,8935508..8935681 |
Genome context |
|
Sequence |
000001 TTGAAATGTT TTTAGTTTTG TTTTGGATTT TTGTGTGGTA TTTTATTTCC TTTATACCAA TGCCATTTTG CCATGCTGTT 000080
000081 TTGGGGTGGC TGCCTAACTC TAGTGAAAAT TCTTTCTATA TTAATGAAAG TTTGGCCTTT GAAGATCCTT AATGTTTTGC 000160 000161 ATTTTTTACA TTGTTTTTAA AGAAATATTC TAACTGCTTG CACTGTTACT GTTCTTTACC AGCCTTTTCA GGAGCCAAAA 000240 000241 AAACAAATAC AAACAAACAA AAAAATACCC AGAGAAAAAA CTTTCCTTCT TCCCCCTTCC TGATGATGAG TGAGAAGTAT 000320 000321 TGAGAACTTT CGGGGTCAGT GCCCTTCTAA ACTCCCCTTC CCCCAATAAT GCAGCTGTAT AATGAATGGT AAATGCACCG 000400 000401 GTTTGGATTC AGGCACAGCC CCAGTCTGCC TACAGCAGAC AACTAAACTG GTAGGTGGCA GCAGAGGAAG GAATTCTTCA 000480 000481 GATTGATGGC TACTGACTTA AAGTCTGCAT AGGAGAAGAG ATAGAGCATG ACATACCAAG TGAAGCAAGG GGGACAAAAA 000560 000561 TGGAAACAGG ACTAAGATTC CTGCATTTTG ACTCTAAATG GTTCTTTTGA AGTAACCAGT GATCTTTTTT GCTTACCCTC 000640 000641 ATCAACAGAA TGGATGAAGA TAGATTTGAC TGTGTGCTTT TTCAAGTGGA GAATATGAAT ATACAGAACA AGAAAGCAAT 000720 000721 AACTCCAACC TGTTTGATTC CGTCTGTTTT CTAAATAAAG ACACTATGCG CTGG |
Predicted Small Protein
Name | NONHSAT026362_smProtein_5:151 |
Length | 49 |
Molecular weight | 5766.659 |
Aromaticity | 0.270833333333 |
Instability index | 59.5752083333 |
Isoelectric point | 3.99725341797 |
Runs | 10 |
Runs residual | 0.0427631578947 |
Runs probability | 0.0241388447271 |
Amino acid sequence | MFLVLFWIFVWYFISFIPMPFCHAVLGWLPNSSENSFYINESLAFEDP |
Secondary structure | LEEHHHHHHHHHHHHHLLLLHHHHHHLLLLLLLLLLEEELHHHHLLLL |
PRMN | LLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | i??????????????????????????????????????????????? |