Difference between revisions of "NONHSAT027153"

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sequence = <dnaseq>GTTTTGTTGCCTTTTAAAGGGAGAGGAAAGCAAACCACAGGCTATTTTATTATGAGCCTTCAAAAGGGAGGGGGTAAAAACTAGTTATCAATGTTGTGCCTTTATTCTTTATGAAGAAAAACAAAATTTAGCTTAAATACTCATGGGGGGGGTGCTTTGATTTTTTTTTTAAAACTAGAGCTAGATTAAAACTGATGGTGAAGAGAAGAAAAAAAGTTTTTTGTAGTTCAACAATTGAATATTTCTTGGCTCTTAAACATTTCAGAGAAGCGCTACAAAGCAGCCACTGTGCTTACTGAACGGCCTCCCCCTGTATCGCTTAATTGAGAAGGTATACAAATGCTCTCAGTCCAGCCAGACACCAAGCCGAAAGGTTGTGCTGGCTGCAACCGAAAGATCAAGGACCGGTATCTTCTAAAGGCACTGGACAAATACTGGCATGAAGACTGCCTGAAGTGTGCCTGCTGTGACTGTCGCTTGGGAGAGGCTCTTTGGTGTAACGGGAAACTGCGCTGCCTGTAGTAAGCTCATCCCTGCCTTTGAGATGGTG</dnaseq>|
 
sequence = <dnaseq>GTTTTGTTGCCTTTTAAAGGGAGAGGAAAGCAAACCACAGGCTATTTTATTATGAGCCTTCAAAAGGGAGGGGGTAAAAACTAGTTATCAATGTTGTGCCTTTATTCTTTATGAAGAAAAACAAAATTTAGCTTAAATACTCATGGGGGGGGTGCTTTGATTTTTTTTTTAAAACTAGAGCTAGATTAAAACTGATGGTGAAGAGAAGAAAAAAAGTTTTTTGTAGTTCAACAATTGAATATTTCTTGGCTCTTAAACATTTCAGAGAAGCGCTACAAAGCAGCCACTGTGCTTACTGAACGGCCTCCCCCTGTATCGCTTAATTGAGAAGGTATACAAATGCTCTCAGTCCAGCCAGACACCAAGCCGAAAGGTTGTGCTGGCTGCAACCGAAAGATCAAGGACCGGTATCTTCTAAAGGCACTGGACAAATACTGGCATGAAGACTGCCTGAAGTGTGCCTGCTGTGACTGTCGCTTGGGAGAGGCTCTTTGGTGTAACGGGAAACTGCGCTGCCTGTAGTAAGCTCATCCCTGCCTTTGAGATGGTG</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG010601]]
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[[Category:Sense]][[Category:NONHSAG010601]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 20:55, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT027153

Source

NONCODE4.0

Same with

,

Classification

sense

Length

550 nt

Genomic location

chr12-:16713409..16760858

Exon number

4

Exons

16713409..16713472,16753648..16753802,16759000..16759066,16760595..16760858

Genome context

Sequence
000001 GTTTTGTTGC CTTTTAAAGG GAGAGGAAAG CAAACCACAG GCTATTTTAT TATGAGCCTT CAAAAGGGAG GGGGTAAAAA 000080
000081 CTAGTTATCA ATGTTGTGCC TTTATTCTTT ATGAAGAAAA ACAAAATTTA GCTTAAATAC TCATGGGGGG GGTGCTTTGA 000160
000161 TTTTTTTTTT AAAACTAGAG CTAGATTAAA ACTGATGGTG AAGAGAAGAA AAAAAGTTTT TTGTAGTTCA ACAATTGAAT 000240
000241 ATTTCTTGGC TCTTAAACAT TTCAGAGAAG CGCTACAAAG CAGCCACTGT GCTTACTGAA CGGCCTCCCC CTGTATCGCT 000320
000321 TAATTGAGAA GGTATACAAA TGCTCTCAGT CCAGCCAGAC ACCAAGCCGA AAGGTTGTGC TGGCTGCAAC CGAAAGATCA 000400
000401 AGGACCGGTA TCTTCTAAAG GCACTGGACA AATACTGGCA TGAAGACTGC CTGAAGTGTG CCTGCTGTGA CTGTCGCTTG 000480
000481 GGAGAGGCTC TTTGGTGTAA CGGGAAACTG CGCTGCCTGT AGTAAGCTCA TCCCTGCCTT TGAGATGGTG
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Predicted Small Protein

Name NONHSAT027153_smProtein_194:298
Length 35
Molecular weight 4078.7862
Aromaticity 0.147058823529
Instability index 74.0147058824
Isoelectric point 9.78326416016
Runs 6
Runs residual 0.00967982129561
Runs probability 0.00662427133014
Amino acid sequence MVKRRKKVFCSSTIEYFLALKHFREALQSSHCAY
Secondary structure LLLHHHHEELLLHHHHHHHHHHHHHHHHHHLLLL
PRMN -
PiMo -