Difference between revisions of "Lnc-MTHFSD-2:10"

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sequence = <dnaseq>CGACACAGTGATGGTATCTTGCAGCTGCTGCTTCTGTCCAAGGCACTGCAGCCTACTCGTCAAAAGCCCGAAGCCCAGCTCTGCCAGCAGTGCACTGTGTGCTCTTAGGAAACAGAGAAGCAAAGAAGTTAGCAAGCTTGTTTTGGCAGAAGAAAAAACACAAAATACCCAACCACAGATCCTCAAAAATATTGCTAAGCACTAATTTTGCTAACATGTTAGACAGCCTTCGGATCTAGGCAATCTTGTTCCTCAGCTGGAAAGAGTTCCTGCCAGCCATGTGATTCCAAATCCACCCTGGACATATGGGGATAATGAGAAAATCAGCTCCGGCCTTCCCTGGCCTTCCAGCCAAGTGAATGGGGGCATCCCCTGGTGCTTCAGCCCGGGGCCCACCCAGAGGATGCTAGCTGGCCTGCAGAGGCCTCAACCATGCCCTCCTGGACTCAGGTAAGACTGAGGTTTCCATGCCCTCAAAACAATTGTTCAGACAAAAACTCACTGCCCAGGTCAAAGTCACAGCACCAGAAAGCCAACCTGAGGATGAAGACAAAGCTCTTTGTTGGCACAGTCCCCTGATCATTCGAGGTCAGCATCTCCATCAAAATGGACCCAATGCTGAGGCAAGAAGGAGAACATCACTGTTAAGAAGATGGAAAATGCATTTGAGGTGGACTGAACACAGCCAGGAGTTTTTGCTTATCGACAGCACTGAATCCTGCCTTGACTAGAGAGACTCGTCATGTGATCAACTGTGGCCAGAGGGCATCCTGCAGACAGCTCCTGTCACACCACACTGACCAGACTCTTATGAGTATTTAAGCATCTTCAGGGAAGCGATTGACTGTCTTATAATGGTCTTACAAGTACGGAACTTTATTACCTGCTAATAATCAGAGCACATGATGGCACAATAGAATATACGAGTGAAGTTCTAAATGCAAGGTTGTTCTTATTCTGTGAGTGGCAAAACTCATGCAGTGAGCAGATAAAGCTGGCAGGAGGCATTGGCGCCCTAATGCTGGGCACTAACCACCTGCCCGGACTGCGAATATCTGTTGGGTCCTTTCTATATCTGGTCTATTCTCGTGTTTGATTATATCCTGGTGGCAAGAATAGCAAAATCAACTCTCCTTCCTATCCCATGTGGAGAGGCATGATTTGAGTCAGAGAGCATTATCCTCTCTGCGTTATCCAACCCCATGTCCCATGATGCACTTTGTAGACAAGCAAGTGTCCCTGGTGGAGAATCCACAGCCACACATCCTCATTGGTTGCAAGGATCAGTGTCCAATATCTACTGCCATGATCATTCTCAGTTTTACATCCACAGAGCTTCATAGAATTCTAACACCACAGGTCCAAGTAGAGGTTTTGGCCTCAGAGTGGGCTAGATTCCACCTCTGACAGCAGCTGTGGGACTGTTTTTCCATCTGTAAAATGGAGACAAGAGTATCACCTACCTCATGGTGTTGGTGGGATCGTTAAACAGAATTCCGATCATGAAACCCTTAGCCTGCTCCCTGCATAGGCTGCATGCGCTCAGTGAGCTATGGCTCTGTTTCATGCTGACTTTACCATCATGTAAGCAGTTTTAAAAATGCTAGAAGCTTTAGTCATAGAATTACCATATGATACAGCCTACTGCAGAGTCCAGAGGCTGAGGCAGGAGAGTTACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGATTCTGTCTCAACACAAAAAAGAAGACATGTGTCCCCATCACAGTATCATACAGAGTGCTTCCACTGCCCTAAAATACCCTGTGCTCTTCCTATTCATCCCTCTCTTCAACCCCAGCAACCACTGATCCTTTTACCATCTCCATGGTTTTGCCTTTCCCAGAATGTCATATTGTTGGAATCATACGCTATGTAGCCTTTGCAAATGGGCTTCTTTCACCGAGCAATGTGCATTGAAGGTGCCTCTATGACTTTTCAAGGGTTGATAGCTCATTCCTTTTTATTGCTAAATAATATTCCATTGTCTGAATGTACCACATTTTGTTTATCCATTCACCTACTAAAGGACATCTTGGTTGCTTCCAAGTTTGGGCAATTATAAATAAAAC</dnaseq>|
 
sequence = <dnaseq>CGACACAGTGATGGTATCTTGCAGCTGCTGCTTCTGTCCAAGGCACTGCAGCCTACTCGTCAAAAGCCCGAAGCCCAGCTCTGCCAGCAGTGCACTGTGTGCTCTTAGGAAACAGAGAAGCAAAGAAGTTAGCAAGCTTGTTTTGGCAGAAGAAAAAACACAAAATACCCAACCACAGATCCTCAAAAATATTGCTAAGCACTAATTTTGCTAACATGTTAGACAGCCTTCGGATCTAGGCAATCTTGTTCCTCAGCTGGAAAGAGTTCCTGCCAGCCATGTGATTCCAAATCCACCCTGGACATATGGGGATAATGAGAAAATCAGCTCCGGCCTTCCCTGGCCTTCCAGCCAAGTGAATGGGGGCATCCCCTGGTGCTTCAGCCCGGGGCCCACCCAGAGGATGCTAGCTGGCCTGCAGAGGCCTCAACCATGCCCTCCTGGACTCAGGTAAGACTGAGGTTTCCATGCCCTCAAAACAATTGTTCAGACAAAAACTCACTGCCCAGGTCAAAGTCACAGCACCAGAAAGCCAACCTGAGGATGAAGACAAAGCTCTTTGTTGGCACAGTCCCCTGATCATTCGAGGTCAGCATCTCCATCAAAATGGACCCAATGCTGAGGCAAGAAGGAGAACATCACTGTTAAGAAGATGGAAAATGCATTTGAGGTGGACTGAACACAGCCAGGAGTTTTTGCTTATCGACAGCACTGAATCCTGCCTTGACTAGAGAGACTCGTCATGTGATCAACTGTGGCCAGAGGGCATCCTGCAGACAGCTCCTGTCACACCACACTGACCAGACTCTTATGAGTATTTAAGCATCTTCAGGGAAGCGATTGACTGTCTTATAATGGTCTTACAAGTACGGAACTTTATTACCTGCTAATAATCAGAGCACATGATGGCACAATAGAATATACGAGTGAAGTTCTAAATGCAAGGTTGTTCTTATTCTGTGAGTGGCAAAACTCATGCAGTGAGCAGATAAAGCTGGCAGGAGGCATTGGCGCCCTAATGCTGGGCACTAACCACCTGCCCGGACTGCGAATATCTGTTGGGTCCTTTCTATATCTGGTCTATTCTCGTGTTTGATTATATCCTGGTGGCAAGAATAGCAAAATCAACTCTCCTTCCTATCCCATGTGGAGAGGCATGATTTGAGTCAGAGAGCATTATCCTCTCTGCGTTATCCAACCCCATGTCCCATGATGCACTTTGTAGACAAGCAAGTGTCCCTGGTGGAGAATCCACAGCCACACATCCTCATTGGTTGCAAGGATCAGTGTCCAATATCTACTGCCATGATCATTCTCAGTTTTACATCCACAGAGCTTCATAGAATTCTAACACCACAGGTCCAAGTAGAGGTTTTGGCCTCAGAGTGGGCTAGATTCCACCTCTGACAGCAGCTGTGGGACTGTTTTTCCATCTGTAAAATGGAGACAAGAGTATCACCTACCTCATGGTGTTGGTGGGATCGTTAAACAGAATTCCGATCATGAAACCCTTAGCCTGCTCCCTGCATAGGCTGCATGCGCTCAGTGAGCTATGGCTCTGTTTCATGCTGACTTTACCATCATGTAAGCAGTTTTAAAAATGCTAGAAGCTTTAGTCATAGAATTACCATATGATACAGCCTACTGCAGAGTCCAGAGGCTGAGGCAGGAGAGTTACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGATTCTGTCTCAACACAAAAAAGAAGACATGTGTCCCCATCACAGTATCATACAGAGTGCTTCCACTGCCCTAAAATACCCTGTGCTCTTCCTATTCATCCCTCTCTTCAACCCCAGCAACCACTGATCCTTTTACCATCTCCATGGTTTTGCCTTTCCCAGAATGTCATATTGTTGGAATCATACGCTATGTAGCCTTTGCAAATGGGCTTCTTTCACCGAGCAATGTGCATTGAAGGTGCCTCTATGACTTTTCAAGGGTTGATAGCTCATTCCTTTTTATTGCTAAATAATATTCCATTGTCTGAATGTACCACATTTTGTTTATCCATTCACCTACTAAAGGACATCTTGGTTGCTTCCAAGTTTGGGCAATTATAAATAAAAC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-MTHFSD-2]]
+
[[Category:Intergenic]][[Category:lnc-MTHFSD-2]][[Category:NONHSAG020218]][[Category:Transcripts]]

Latest revision as of 04:43, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-MTHFSD-2:10

Source

LNCipedia2.1

Same with

NONHSAT144205

Classification

intergenic

Length

2138 nt

Genomic location

chr16-:86508145..86511599

Exon number

3

Exons

86508145..86509630,86510262..86510805,86511492..86511599

Genome context

Sequence
000001 CGACACAGTG ATGGTATCTT GCAGCTGCTG CTTCTGTCCA AGGCACTGCA GCCTACTCGT CAAAAGCCCG AAGCCCAGCT 000080
000081 CTGCCAGCAG TGCACTGTGT GCTCTTAGGA AACAGAGAAG CAAAGAAGTT AGCAAGCTTG TTTTGGCAGA AGAAAAAACA 000160
000161 CAAAATACCC AACCACAGAT CCTCAAAAAT ATTGCTAAGC ACTAATTTTG CTAACATGTT AGACAGCCTT CGGATCTAGG 000240
000241 CAATCTTGTT CCTCAGCTGG AAAGAGTTCC TGCCAGCCAT GTGATTCCAA ATCCACCCTG GACATATGGG GATAATGAGA 000320
000321 AAATCAGCTC CGGCCTTCCC TGGCCTTCCA GCCAAGTGAA TGGGGGCATC CCCTGGTGCT TCAGCCCGGG GCCCACCCAG 000400
000401 AGGATGCTAG CTGGCCTGCA GAGGCCTCAA CCATGCCCTC CTGGACTCAG GTAAGACTGA GGTTTCCATG CCCTCAAAAC 000480
000481 AATTGTTCAG ACAAAAACTC ACTGCCCAGG TCAAAGTCAC AGCACCAGAA AGCCAACCTG AGGATGAAGA CAAAGCTCTT 000560
000561 TGTTGGCACA GTCCCCTGAT CATTCGAGGT CAGCATCTCC ATCAAAATGG ACCCAATGCT GAGGCAAGAA GGAGAACATC 000640
000641 ACTGTTAAGA AGATGGAAAA TGCATTTGAG GTGGACTGAA CACAGCCAGG AGTTTTTGCT TATCGACAGC ACTGAATCCT 000720
000721 GCCTTGACTA GAGAGACTCG TCATGTGATC AACTGTGGCC AGAGGGCATC CTGCAGACAG CTCCTGTCAC ACCACACTGA 000800
000801 CCAGACTCTT ATGAGTATTT AAGCATCTTC AGGGAAGCGA TTGACTGTCT TATAATGGTC TTACAAGTAC GGAACTTTAT 000880
000881 TACCTGCTAA TAATCAGAGC ACATGATGGC ACAATAGAAT ATACGAGTGA AGTTCTAAAT GCAAGGTTGT TCTTATTCTG 000960
000961 TGAGTGGCAA AACTCATGCA GTGAGCAGAT AAAGCTGGCA GGAGGCATTG GCGCCCTAAT GCTGGGCACT AACCACCTGC 001040
001041 CCGGACTGCG AATATCTGTT GGGTCCTTTC TATATCTGGT CTATTCTCGT GTTTGATTAT ATCCTGGTGG CAAGAATAGC 001120
001121 AAAATCAACT CTCCTTCCTA TCCCATGTGG AGAGGCATGA TTTGAGTCAG AGAGCATTAT CCTCTCTGCG TTATCCAACC 001200
001201 CCATGTCCCA TGATGCACTT TGTAGACAAG CAAGTGTCCC TGGTGGAGAA TCCACAGCCA CACATCCTCA TTGGTTGCAA 001280
001281 GGATCAGTGT CCAATATCTA CTGCCATGAT CATTCTCAGT TTTACATCCA CAGAGCTTCA TAGAATTCTA ACACCACAGG 001360
001361 TCCAAGTAGA GGTTTTGGCC TCAGAGTGGG CTAGATTCCA CCTCTGACAG CAGCTGTGGG ACTGTTTTTC CATCTGTAAA 001440
001441 ATGGAGACAA GAGTATCACC TACCTCATGG TGTTGGTGGG ATCGTTAAAC AGAATTCCGA TCATGAAACC CTTAGCCTGC 001520
001521 TCCCTGCATA GGCTGCATGC GCTCAGTGAG CTATGGCTCT GTTTCATGCT GACTTTACCA TCATGTAAGC AGTTTTAAAA 001600
001601 ATGCTAGAAG CTTTAGTCAT AGAATTACCA TATGATACAG CCTACTGCAG AGTCCAGAGG CTGAGGCAGG AGAGTTACTT 001680
001681 GAACCTGGGA GGCGGAGGTT GCAGTGAGCC AAGATCGCGC CACTGCACTC CAGCCTGGGC AACAGAGTGA GATTCTGTCT 001760
001761 CAACACAAAA AAGAAGACAT GTGTCCCCAT CACAGTATCA TACAGAGTGC TTCCACTGCC CTAAAATACC CTGTGCTCTT 001840
001841 CCTATTCATC CCTCTCTTCA ACCCCAGCAA CCACTGATCC TTTTACCATC TCCATGGTTT TGCCTTTCCC AGAATGTCAT 001920
001921 ATTGTTGGAA TCATACGCTA TGTAGCCTTT GCAAATGGGC TTCTTTCACC GAGCAATGTG CATTGAAGGT GCCTCTATGA 002000
002001 CTTTTCAAGG GTTGATAGCT CATTCCTTTT TATTGCTAAA TAATATTCCA TTGTCTGAAT GTACCACATT TTGTTTATCC 002080
002081 ATTCACCTAC TAAAGGACAT CTTGGTTGCT TCCAAGTTTG GGCAATTATA AATAAAAC
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