Difference between revisions of "NONHSAT122160"

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sequence = <dnaseq>GCGGTGTTCTAGCAGGTGGCTGCTTTCTCTGGGCTGGCTGTGGGAGGCTCCCGAGGTGGGGACCCGGCCGGGATGGCTGCAGCGGCGGCCGGGGCTGGGAGCGGGCCCTCGGCGGCCCAGGAGAAGCAGTTCCTGCCGGCGCTGCTGAGTTTCTTCATCTACAACCCGCGCTTCTGGCCGCGGGAAGGAGAGGTTGTTCGGAATCCTATAATTGAAAAACAGTAAAGATGGAAAACCAGTTATTGAATATCAAGAGGAGGAGTTGTTGGACAAGGTTTATAGCTCGGTGCTGCAGCAGTGCTACAGCATGTACAAGAAGTCTCAGGGGATCCAGAACTGCAGCCAGTCCTTGCTGGGCTGTTCCTGTCCATGTGCCTGGTCACGGTGCTGGGGAACCTGCTCATCATCCTGGCCATCAGCCCTGACTCCCACCTCCACACCCCCATGTACTTCTTCCTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCAAGATGATTGTGGACATCCAGTCTCACAGCAGAGTCATCTCCTATGCAGGCTGCCTGACTCAGATGTCTCTCTTTGCCATTTTTGGAGGCATGGAAGAGAGACATGCTCCTGAGTGTGATGGCCTATGACTGGTTTGTAGCCATCTGTCACCCGCTATATCATTCACCATCATGAACCCGTGTTTCTGTGC</dnaseq>|
 
sequence = <dnaseq>GCGGTGTTCTAGCAGGTGGCTGCTTTCTCTGGGCTGGCTGTGGGAGGCTCCCGAGGTGGGGACCCGGCCGGGATGGCTGCAGCGGCGGCCGGGGCTGGGAGCGGGCCCTCGGCGGCCCAGGAGAAGCAGTTCCTGCCGGCGCTGCTGAGTTTCTTCATCTACAACCCGCGCTTCTGGCCGCGGGAAGGAGAGGTTGTTCGGAATCCTATAATTGAAAAACAGTAAAGATGGAAAACCAGTTATTGAATATCAAGAGGAGGAGTTGTTGGACAAGGTTTATAGCTCGGTGCTGCAGCAGTGCTACAGCATGTACAAGAAGTCTCAGGGGATCCAGAACTGCAGCCAGTCCTTGCTGGGCTGTTCCTGTCCATGTGCCTGGTCACGGTGCTGGGGAACCTGCTCATCATCCTGGCCATCAGCCCTGACTCCCACCTCCACACCCCCATGTACTTCTTCCTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCAAGATGATTGTGGACATCCAGTCTCACAGCAGAGTCATCTCCTATGCAGGCTGCCTGACTCAGATGTCTCTCTTTGCCATTTTTGGAGGCATGGAAGAGAGACATGCTCCTGAGTGTGATGGCCTATGACTGGTTTGTAGCCATCTGTCACCCGCTATATCATTCACCATCATGAACCCGTGTTTCTGTGC</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG048277]]
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[[Category:Intergenic]][[Category:NONHSAG048277]][[Category:Transcripts]]

Latest revision as of 06:40, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT122160

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

698 nt

Genomic location

chr7-:97595659..97601656

Exon number

4

Exons

97595659..97596289,97598317..97598364,97599082..97599157,97601447..97601656

Genome context

Sequence
000001 GCGGTGTTCT AGCAGGTGGC TGCTTTCTCT GGGCTGGCTG TGGGAGGCTC CCGAGGTGGG GACCCGGCCG GGATGGCTGC 000080
000081 AGCGGCGGCC GGGGCTGGGA GCGGGCCCTC GGCGGCCCAG GAGAAGCAGT TCCTGCCGGC GCTGCTGAGT TTCTTCATCT 000160
000161 ACAACCCGCG CTTCTGGCCG CGGGAAGGAG AGGTTGTTCG GAATCCTATA ATTGAAAAAC AGTAAAGATG GAAAACCAGT 000240
000241 TATTGAATAT CAAGAGGAGG AGTTGTTGGA CAAGGTTTAT AGCTCGGTGC TGCAGCAGTG CTACAGCATG TACAAGAAGT 000320
000321 CTCAGGGGAT CCAGAACTGC AGCCAGTCCT TGCTGGGCTG TTCCTGTCCA TGTGCCTGGT CACGGTGCTG GGGAACCTGC 000400
000401 TCATCATCCT GGCCATCAGC CCTGACTCCC ACCTCCACAC CCCCATGTAC TTCTTCCTCT CCAACCTGTC CTTGCCTGAC 000480
000481 ATCGGTTTCA CCTCCACCAC GGTCCCCAAG ATGATTGTGG ACATCCAGTC TCACAGCAGA GTCATCTCCT ATGCAGGCTG 000560
000561 CCTGACTCAG ATGTCTCTCT TTGCCATTTT TGGAGGCATG GAAGAGAGAC ATGCTCCTGA GTGTGATGGC CTATGACTGG 000640
000641 TTTGTAGCCA TCTGTCACCC GCTATATCAT TCACCATCAT GAACCCGTGT TTCTGTGC
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Predicted Small Protein

Name NONHSAT122160_smProtein_227:424
Length 66
Molecular weight 7061.011
Aromaticity 0.0461538461538
Instability index 86.0907692308
Isoelectric point 9.93475341797
Runs 9
Runs residual 0.0118269230769
Runs probability 0.0334353961805
Amino acid sequence MENQLLNIKRRSCWTRFIARCCSSATACTRSLRGSRTAASPCWAVPVHVPGHGAGEPAHH
PGHQP
Secondary structure LLLHHHLLLHHHHHHHHHHHHLLLLHHHHHLLLLLLLLLLLLEEEEEELLLLLLLLLLLL
LLLLL
PRMN -
PiMo -