Difference between revisions of "NONHSAT027861"
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sequence = <dnaseq>GATTCATCCCAGGCCAGGCGAGTGGAAAAGTACCAGCCGCGCGCGAGGGGCGGGGGCGCGCCGAGGGGCGGAAAAGTACAGACGGCGGAGCCGCGGGGAGAACAAAGATGATGCCACCGCTGTGTTGCGGCCGTCGAGGCCCCCTACTCCGGCAGATTTCAACCTGCTTTCACTCTTCAAAACTAGCCGGAGGTCGGCGAGCAGCTCCTTTTCGGGATGTGCTTTTTGTACGGCCATGGAAACTGGACTAGCGGAAAGGCTACCTTTTGGCCAGCAAGCCAGGCCCCTTAGAAAGAGGCCCCAGTGGGGAGCCCGGCGCTCCTAAGGCCGTTTGGGAGTCCCCAGTTTTCCACTCGCTGACACGTTGCTTCTCTTATCCCACCACCGCCGCCCCGGGCAAAGGCACTGCCTTGTCTGAATGCGGGTCTGAGGCGCTTTCTGCGGAGCCTGGTCCTTTCCCTTCAATGGTGATGTGTGTGGTCTTGCTGAGCCAGGCAACTAGGGGGACCCTTCGCTGTGGAAAAATTGGTGCTGCGGGAAAGGCAAGACTCACTCCCTTGCAGGAAACAAAGACCCCTTAGGAGAGAGAAATGTTCATGGAATGAATGAATAAACAAGTTTGACCTAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>GATTCATCCCAGGCCAGGCGAGTGGAAAAGTACCAGCCGCGCGCGAGGGGCGGGGGCGCGCCGAGGGGCGGAAAAGTACAGACGGCGGAGCCGCGGGGAGAACAAAGATGATGCCACCGCTGTGTTGCGGCCGTCGAGGCCCCCTACTCCGGCAGATTTCAACCTGCTTTCACTCTTCAAAACTAGCCGGAGGTCGGCGAGCAGCTCCTTTTCGGGATGTGCTTTTTGTACGGCCATGGAAACTGGACTAGCGGAAAGGCTACCTTTTGGCCAGCAAGCCAGGCCCCTTAGAAAGAGGCCCCAGTGGGGAGCCCGGCGCTCCTAAGGCCGTTTGGGAGTCCCCAGTTTTCCACTCGCTGACACGTTGCTTCTCTTATCCCACCACCGCCGCCCCGGGCAAAGGCACTGCCTTGTCTGAATGCGGGTCTGAGGCGCTTTCTGCGGAGCCTGGTCCTTTCCCTTCAATGGTGATGTGTGTGGTCTTGCTGAGCCAGGCAACTAGGGGGACCCTTCGCTGTGGAAAAATTGGTGCTGCGGGAAAGGCAAGACTCACTCCCTTGCAGGAAACAAAGACCCCTTAGGAGAGAGAAATGTTCATGGAATGAATGAATAAACAAGTTTGACCTAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]][[Category:NONHSAG010986]] | + | [[Category:Antisense]][[Category:NONHSAG010986]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:58, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027861 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
641 nt |
Genomic location |
chr12+:46765246..46767561 |
Exon number |
2 |
Exons |
46765246..46765406,46767096..46767561 |
Genome context |
|
Sequence |
000001 GATTCATCCC AGGCCAGGCG AGTGGAAAAG TACCAGCCGC GCGCGAGGGG CGGGGGCGCG CCGAGGGGCG GAAAAGTACA 000080
000081 GACGGCGGAG CCGCGGGGAG AACAAAGATG ATGCCACCGC TGTGTTGCGG CCGTCGAGGC CCCCTACTCC GGCAGATTTC 000160 000161 AACCTGCTTT CACTCTTCAA AACTAGCCGG AGGTCGGCGA GCAGCTCCTT TTCGGGATGT GCTTTTTGTA CGGCCATGGA 000240 000241 AACTGGACTA GCGGAAAGGC TACCTTTTGG CCAGCAAGCC AGGCCCCTTA GAAAGAGGCC CCAGTGGGGA GCCCGGCGCT 000320 000321 CCTAAGGCCG TTTGGGAGTC CCCAGTTTTC CACTCGCTGA CACGTTGCTT CTCTTATCCC ACCACCGCCG CCCCGGGCAA 000400 000401 AGGCACTGCC TTGTCTGAAT GCGGGTCTGA GGCGCTTTCT GCGGAGCCTG GTCCTTTCCC TTCAATGGTG ATGTGTGTGG 000480 000481 TCTTGCTGAG CCAGGCAACT AGGGGGACCC TTCGCTGTGG AAAAATTGGT GCTGCGGGAA AGGCAAGACT CACTCCCTTG 000560 000561 CAGGAAACAA AGACCCCTTA GGAGAGAGAA ATGTTCATGG AATGAATGAA TAAACAAGTT TGACCTAAAA AAAAAAAAAA 000640 000641 A |
Predicted Small Protein
Name | NONHSAT027861_smProtein_107:250 |
Length | 48 |
Molecular weight | 5342.371 |
Aromaticity | 0.0851063829787 |
Instability index | 68.1765957447 |
Isoelectric point | 11.2780151367 |
Runs | 6 |
Runs residual | 0.0386170212766 |
Runs probability | 0.0227727727728 |
Amino acid sequence | MMPPLCCGRRGPLLRQISTCFHSSKLAGGRRAAPFRDVLFVRPWKLD |
Secondary structure | LLLLLLLLLLLLHHHHEELLLLLLLLLLLLLLLLLLLEEEEEEEELL |
PRMN | - |
PiMo | - |