Difference between revisions of "NONHSAT027861"

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sequence = <dnaseq>GATTCATCCCAGGCCAGGCGAGTGGAAAAGTACCAGCCGCGCGCGAGGGGCGGGGGCGCGCCGAGGGGCGGAAAAGTACAGACGGCGGAGCCGCGGGGAGAACAAAGATGATGCCACCGCTGTGTTGCGGCCGTCGAGGCCCCCTACTCCGGCAGATTTCAACCTGCTTTCACTCTTCAAAACTAGCCGGAGGTCGGCGAGCAGCTCCTTTTCGGGATGTGCTTTTTGTACGGCCATGGAAACTGGACTAGCGGAAAGGCTACCTTTTGGCCAGCAAGCCAGGCCCCTTAGAAAGAGGCCCCAGTGGGGAGCCCGGCGCTCCTAAGGCCGTTTGGGAGTCCCCAGTTTTCCACTCGCTGACACGTTGCTTCTCTTATCCCACCACCGCCGCCCCGGGCAAAGGCACTGCCTTGTCTGAATGCGGGTCTGAGGCGCTTTCTGCGGAGCCTGGTCCTTTCCCTTCAATGGTGATGTGTGTGGTCTTGCTGAGCCAGGCAACTAGGGGGACCCTTCGCTGTGGAAAAATTGGTGCTGCGGGAAAGGCAAGACTCACTCCCTTGCAGGAAACAAAGACCCCTTAGGAGAGAGAAATGTTCATGGAATGAATGAATAAACAAGTTTGACCTAAAAAAAAAAAAAAA</dnaseq>|
 
sequence = <dnaseq>GATTCATCCCAGGCCAGGCGAGTGGAAAAGTACCAGCCGCGCGCGAGGGGCGGGGGCGCGCCGAGGGGCGGAAAAGTACAGACGGCGGAGCCGCGGGGAGAACAAAGATGATGCCACCGCTGTGTTGCGGCCGTCGAGGCCCCCTACTCCGGCAGATTTCAACCTGCTTTCACTCTTCAAAACTAGCCGGAGGTCGGCGAGCAGCTCCTTTTCGGGATGTGCTTTTTGTACGGCCATGGAAACTGGACTAGCGGAAAGGCTACCTTTTGGCCAGCAAGCCAGGCCCCTTAGAAAGAGGCCCCAGTGGGGAGCCCGGCGCTCCTAAGGCCGTTTGGGAGTCCCCAGTTTTCCACTCGCTGACACGTTGCTTCTCTTATCCCACCACCGCCGCCCCGGGCAAAGGCACTGCCTTGTCTGAATGCGGGTCTGAGGCGCTTTCTGCGGAGCCTGGTCCTTTCCCTTCAATGGTGATGTGTGTGGTCTTGCTGAGCCAGGCAACTAGGGGGACCCTTCGCTGTGGAAAAATTGGTGCTGCGGGAAAGGCAAGACTCACTCCCTTGCAGGAAACAAAGACCCCTTAGGAGAGAGAAATGTTCATGGAATGAATGAATAAACAAGTTTGACCTAAAAAAAAAAAAAAA</dnaseq>|
 
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[[Category:Antisense]][[Category:NONHSAG010986]]
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[[Category:Antisense]][[Category:NONHSAG010986]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 20:58, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT027861

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

641 nt

Genomic location

chr12+:46765246..46767561

Exon number

2

Exons

46765246..46765406,46767096..46767561

Genome context

Sequence
000001 GATTCATCCC AGGCCAGGCG AGTGGAAAAG TACCAGCCGC GCGCGAGGGG CGGGGGCGCG CCGAGGGGCG GAAAAGTACA 000080
000081 GACGGCGGAG CCGCGGGGAG AACAAAGATG ATGCCACCGC TGTGTTGCGG CCGTCGAGGC CCCCTACTCC GGCAGATTTC 000160
000161 AACCTGCTTT CACTCTTCAA AACTAGCCGG AGGTCGGCGA GCAGCTCCTT TTCGGGATGT GCTTTTTGTA CGGCCATGGA 000240
000241 AACTGGACTA GCGGAAAGGC TACCTTTTGG CCAGCAAGCC AGGCCCCTTA GAAAGAGGCC CCAGTGGGGA GCCCGGCGCT 000320
000321 CCTAAGGCCG TTTGGGAGTC CCCAGTTTTC CACTCGCTGA CACGTTGCTT CTCTTATCCC ACCACCGCCG CCCCGGGCAA 000400
000401 AGGCACTGCC TTGTCTGAAT GCGGGTCTGA GGCGCTTTCT GCGGAGCCTG GTCCTTTCCC TTCAATGGTG ATGTGTGTGG 000480
000481 TCTTGCTGAG CCAGGCAACT AGGGGGACCC TTCGCTGTGG AAAAATTGGT GCTGCGGGAA AGGCAAGACT CACTCCCTTG 000560
000561 CAGGAAACAA AGACCCCTTA GGAGAGAGAA ATGTTCATGG AATGAATGAA TAAACAAGTT TGACCTAAAA AAAAAAAAAA 000640
000641 A
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Predicted Small Protein

Name NONHSAT027861_smProtein_107:250
Length 48
Molecular weight 5342.371
Aromaticity 0.0851063829787
Instability index 68.1765957447
Isoelectric point 11.2780151367
Runs 6
Runs residual 0.0386170212766
Runs probability 0.0227727727728
Amino acid sequence MMPPLCCGRRGPLLRQISTCFHSSKLAGGRRAAPFRDVLFVRPWKLD
Secondary structure LLLLLLLLLLLLHHHHEELLLLLLLLLLLLLLLLLLLEEEEEEEELL
PRMN -
PiMo -