Difference between revisions of "NONHSAT078950"
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sequence = <dnaseq>TAGATTTAGCTGGTGGTGCAGAGATCCGTGAGCTTGCTTTTACAGGACTTTAATGATATATAAAAGCAGCACGAGGTGCTCCTGACTGTGGATTAATTTGGAGATGACTTTCTCTGTTGAAGAGTAGCAAGACTCTCGCGAGTTCTTAAAAATGCACTTGTTTGGTATGAGAATGAAAAGCAGTGGCTGAAGAACCAATCTTCAATGGGCAAGCCTTCTCTGTGTCTGTTCTAACACGTGCCATTTGGGATCCCTTGGAATCTTCATGTACAGAACTGGTTGCTGCCTCGTTGAGTCGGTGGGGACAGAATAGCTCCTGGTTGACAGCATGGGTTGTGCAGAAGGACGGATCCTGCAGACATCAATATCTGGCTTTGAGTGGCACAAAGAAATAAAGGAATGTGGATTCAGACCTCACTGGGATGCTTGGCAATTCTAATTCTACCCCAGACTGCAAATGGACACACAACTGTTGTGACTTTTGTTGAAGAGGAGAAGGATGGCACAGAAGCTGGATTCAGAAGCACACAGGTCTGGGGATGCAGGCTTCGGCCAGCCTGATGCAAGGAAAGACTGCCATCTCGTGGTCAGCTCAATCCTGGCACCTTGGTGAGGGACCAGGCTGCAGAAAACCAGGCTTGGGGAGGAAACGGTGCTGCAAACTGGATTTCTGCCGGACAGTGTGGATGCCCTTAGAAAACACCCAGAAAAGAGCTGAGTGCCCCCCAAGGTAGGCTTCAGTGAATCCTCTGCAGGTGTGTTGTCATCCCTTGAGCCAAACACATGCTTCACACACACGCTGCAGGCTGCGTGAAAATGAGGTAGAAATGTGGGGAAAACATAATCCCATGGAGAGAACAAAGAGCTGAACACGTAAATGCCTCCGGCGTGCCTGGCAGAGAGAACACTCAGGCTGAGAGAAGGGACAGTGACTTGTACCAAAGGTAGGCAAGTAGCCTCTGGGGTCTCAATCAGCAGGGCATCTGGTCAACCCTTCAGACAAAGTCAGGTCTGAGCAGGCAAG</dnaseq>| | sequence = <dnaseq>TAGATTTAGCTGGTGGTGCAGAGATCCGTGAGCTTGCTTTTACAGGACTTTAATGATATATAAAAGCAGCACGAGGTGCTCCTGACTGTGGATTAATTTGGAGATGACTTTCTCTGTTGAAGAGTAGCAAGACTCTCGCGAGTTCTTAAAAATGCACTTGTTTGGTATGAGAATGAAAAGCAGTGGCTGAAGAACCAATCTTCAATGGGCAAGCCTTCTCTGTGTCTGTTCTAACACGTGCCATTTGGGATCCCTTGGAATCTTCATGTACAGAACTGGTTGCTGCCTCGTTGAGTCGGTGGGGACAGAATAGCTCCTGGTTGACAGCATGGGTTGTGCAGAAGGACGGATCCTGCAGACATCAATATCTGGCTTTGAGTGGCACAAAGAAATAAAGGAATGTGGATTCAGACCTCACTGGGATGCTTGGCAATTCTAATTCTACCCCAGACTGCAAATGGACACACAACTGTTGTGACTTTTGTTGAAGAGGAGAAGGATGGCACAGAAGCTGGATTCAGAAGCACACAGGTCTGGGGATGCAGGCTTCGGCCAGCCTGATGCAAGGAAAGACTGCCATCTCGTGGTCAGCTCAATCCTGGCACCTTGGTGAGGGACCAGGCTGCAGAAAACCAGGCTTGGGGAGGAAACGGTGCTGCAAACTGGATTTCTGCCGGACAGTGTGGATGCCCTTAGAAAACACCCAGAAAAGAGCTGAGTGCCCCCCAAGGTAGGCTTCAGTGAATCCTCTGCAGGTGTGTTGTCATCCCTTGAGCCAAACACATGCTTCACACACACGCTGCAGGCTGCGTGAAAATGAGGTAGAAATGTGGGGAAAACATAATCCCATGGAGAGAACAAAGAGCTGAACACGTAAATGCCTCCGGCGTGCCTGGCAGAGAGAACACTCAGGCTGAGAGAAGGGACAGTGACTTGTACCAAAGGTAGGCAAGTAGCCTCTGGGGTCTCAATCAGCAGGGCATCTGGTCAACCCTTCAGACAAAGTCAGGTCTGAGCAGGCAAG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG031428]] | + | [[Category:Intergenic]][[Category:NONHSAG031428]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 23:55, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT078950 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1024 nt |
| Genomic location |
chr20+:21550665..21596820 |
| Exon number |
4 |
| Exons |
21550665..21550886,21593186..21593321,21596021..21596165,21596300..21596820 |
| Genome context |
|
| Sequence |
000001 TAGATTTAGC TGGTGGTGCA GAGATCCGTG AGCTTGCTTT TACAGGACTT TAATGATATA TAAAAGCAGC ACGAGGTGCT 000080
000081 CCTGACTGTG GATTAATTTG GAGATGACTT TCTCTGTTGA AGAGTAGCAA GACTCTCGCG AGTTCTTAAA AATGCACTTG 000160 000161 TTTGGTATGA GAATGAAAAG CAGTGGCTGA AGAACCAATC TTCAATGGGC AAGCCTTCTC TGTGTCTGTT CTAACACGTG 000240 000241 CCATTTGGGA TCCCTTGGAA TCTTCATGTA CAGAACTGGT TGCTGCCTCG TTGAGTCGGT GGGGACAGAA TAGCTCCTGG 000320 000321 TTGACAGCAT GGGTTGTGCA GAAGGACGGA TCCTGCAGAC ATCAATATCT GGCTTTGAGT GGCACAAAGA AATAAAGGAA 000400 000401 TGTGGATTCA GACCTCACTG GGATGCTTGG CAATTCTAAT TCTACCCCAG ACTGCAAATG GACACACAAC TGTTGTGACT 000480 000481 TTTGTTGAAG AGGAGAAGGA TGGCACAGAA GCTGGATTCA GAAGCACACA GGTCTGGGGA TGCAGGCTTC GGCCAGCCTG 000560 000561 ATGCAAGGAA AGACTGCCAT CTCGTGGTCA GCTCAATCCT GGCACCTTGG TGAGGGACCA GGCTGCAGAA AACCAGGCTT 000640 000641 GGGGAGGAAA CGGTGCTGCA AACTGGATTT CTGCCGGACA GTGTGGATGC CCTTAGAAAA CACCCAGAAA AGAGCTGAGT 000720 000721 GCCCCCCAAG GTAGGCTTCA GTGAATCCTC TGCAGGTGTG TTGTCATCCC TTGAGCCAAA CACATGCTTC ACACACACGC 000800 000801 TGCAGGCTGC GTGAAAATGA GGTAGAAATG TGGGGAAAAC ATAATCCCAT GGAGAGAACA AAGAGCTGAA CACGTAAATG 000880 000881 CCTCCGGCGT GCCTGGCAGA GAGAACACTC AGGCTGAGAG AAGGGACAGT GACTTGTACC AAAGGTAGGC AAGTAGCCTC 000960 000961 TGGGGTCTCA ATCAGCAGGG CATCTGGTCA ACCCTTCAGA CAAAGTCAGG TCTGAGCAGG CAAG |
Predicted Small Protein
| Name | NONHSAT078950_smProtein_539:733 |
| Length | 65 |
| Molecular weight | 7177.3332 |
| Aromaticity | 0.0625 |
| Instability index | 41.8203125 |
| Isoelectric point | 9.73187255859 |
| Runs | 9 |
| Runs residual | 0.00796875 |
| Runs probability | 0.0286266658816 |
| Amino acid sequence | MQASASLMQGKTAISWSAQSWHLGEGPGCRKPGLGRKRCCKLDFCRTVWMPLENTQKRAE CPPR |
| Secondary structure | LLLHHHHHLLLEEEEEELLLLLLLLLLLLLLLLLLLLEEEELLLLEEEELLLLLLLLLLL LLLL |
| PRMN | - |
| PiMo | - |
