Difference between revisions of "NONHSAT101112"

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sequence = <dnaseq>ATTTTGCAATTTCTCATGCCAATAAAAAAGAATGCTTCAATTTTACAAGAAGTATTCAGGTTTTGATAATCATTTTTTTTAAAAAAAAACCCAAACTCAGAATGTCTAAGTGTGTGACAGGAATATTTAATATTTTATATTCTCAAGTCATCACCCCAAGTATGCCATCTAATCCATATCTGTAGGGAAATCTATTTTTAAAGTAAGTGATACCTTGGAGGAAAAATAGATACATCATGATTACAGTTTTCATCACACCATAATCTTTTATTTTAGAATTAAGGAGAAGTATCCTCAAACATTTGATGACATATGCCTTTACTCTGAGGTTTCCCATTTGCTGTCACACTGCACATTCAGACTTCCGTGTCGGAGGTTCATACAAGAATTATTTCAAGATGTACAGTTTCTACAAATGCATGAAGAAGCAGAGGCTGTGTTGGCAACACCACCAAAGCAACCTATAGTTGATACATCTGCTGAATCCTGACCTCATATTTATGATGGATATAGATACATACTATATATATTCATATTTGTGGATTTCCTAAAAGCCTCAGAAAATACGAC</dnaseq>|
 
sequence = <dnaseq>ATTTTGCAATTTCTCATGCCAATAAAAAAGAATGCTTCAATTTTACAAGAAGTATTCAGGTTTTGATAATCATTTTTTTTAAAAAAAAACCCAAACTCAGAATGTCTAAGTGTGTGACAGGAATATTTAATATTTTATATTCTCAAGTCATCACCCCAAGTATGCCATCTAATCCATATCTGTAGGGAAATCTATTTTTAAAGTAAGTGATACCTTGGAGGAAAAATAGATACATCATGATTACAGTTTTCATCACACCATAATCTTTTATTTTAGAATTAAGGAGAAGTATCCTCAAACATTTGATGACATATGCCTTTACTCTGAGGTTTCCCATTTGCTGTCACACTGCACATTCAGACTTCCGTGTCGGAGGTTCATACAAGAATTATTTCAAGATGTACAGTTTCTACAAATGCATGAAGAAGCAGAGGCTGTGTTGGCAACACCACCAAAGCAACCTATAGTTGATACATCTGCTGAATCCTGACCTCATATTTATGATGGATATAGATACATACTATATATATTCATATTTGTGGATTTCCTAAAAGCCTCAGAAAATACGAC</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG040236]]
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[[Category:Sense]][[Category:NONHSAG040236]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 01:17, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT101112

Source

NONCODE4.0

Same with

,

Classification

sense

Length

570 nt

Genomic location

chr5-:38942326..38943349

Exon number

2

Exons

38942326..38942480,38942935..38943349

Genome context

Sequence
000001 ATTTTGCAAT TTCTCATGCC AATAAAAAAG AATGCTTCAA TTTTACAAGA AGTATTCAGG TTTTGATAAT CATTTTTTTT 000080
000081 AAAAAAAAAC CCAAACTCAG AATGTCTAAG TGTGTGACAG GAATATTTAA TATTTTATAT TCTCAAGTCA TCACCCCAAG 000160
000161 TATGCCATCT AATCCATATC TGTAGGGAAA TCTATTTTTA AAGTAAGTGA TACCTTGGAG GAAAAATAGA TACATCATGA 000240
000241 TTACAGTTTT CATCACACCA TAATCTTTTA TTTTAGAATT AAGGAGAAGT ATCCTCAAAC ATTTGATGAC ATATGCCTTT 000320
000321 ACTCTGAGGT TTCCCATTTG CTGTCACACT GCACATTCAG ACTTCCGTGT CGGAGGTTCA TACAAGAATT ATTTCAAGAT 000400
000401 GTACAGTTTC TACAAATGCA TGAAGAAGCA GAGGCTGTGT TGGCAACACC ACCAAAGCAA CCTATAGTTG ATACATCTGC 000480
000481 TGAATCCTGA CCTCATATTT ATGATGGATA TAGATACATA CTATATATAT TCATATTTGT GGATTTCCTA AAAGCCTCAG 000560
000561 AAAATACGAC
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Predicted Small Protein

Name NONHSAT101112_smProtein_305:466
Length 54
Molecular weight 6504.5317
Aromaticity 0.207547169811
Instability index 60.7379245283
Isoelectric point 9.59149169922
Runs 9
Runs residual 0.00954901058444
Runs probability 0.0141317788377
Amino acid sequence MTYAFTLRFPICCHTAHSDFRVGGSYKNYFKMYSFYKCMKKQRLCWQHHQSNL
Secondary structure LEEEEEELLLEEEELLLLLLEELLLHHHHHHHHHHHHHHHHHHHHHHHHHLLL
PRMN -
PiMo -