Difference between revisions of "ENST00000432384.1"

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sequence = <dnaseq>GACGGGGATCCGGAAGGCGTTGTCGGTGACATCACGGAGAGGGCGATTTCTATGTAGATGAGGCAGCGCAGGGGCTGCTGCTTTGCCACGAAAGAGTTCCCGTGCCGTGGGAGCAAGTCTGGGACCGCTGGTCGGACCGGAGAGTCGCAGCTGTGTGTTAGGGCTAGGATGGCTCCGGGATGCGCGTGACGCAAGTGACCTTGCGTGTAAAGGGATACATGATCCCTTAATTCAGGCTCAGGCTGAAGAACTGACCCACTTACGACAGAAGACACAGGAAGGGAGAGGTGTCTGCTACCTTTTTACCCAGCATGTGAAGAACACAGTCAAGTCTTTTGAGGGCCTTCTCAGGAACACTGACATTGCCTACTACCAGAGACAGAGATTCTGTGAGCAAATGGTACAAGGAAGCCAGCTGACAGAGATCCTTGTCAGAAAACTTGCCACAGAATCTTGCTCTCTTACCCAAGCTGGAGTGCAGTGACACGGTCTTGGCTGACTGCAATCTGTGCCTCCTGGGCTCAAGCAATCTTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGTGTGCCACCACACCTGGCTAATGTTTGTATTTTTTGTAGAGATAGGGTTTCTCCATGTTGTCCAGGCTTGTCTTGAACTACTGAGCTGAAGTAATCCACCTGCTTTGGACTCCCAAAGTGCTGGGATTACAGATATGAGCCACTGTGCCTGGCCTGAGAGTTCTTAGTTTCAATCAGTAAGAGA</dnaseq>|
 
sequence = <dnaseq>GACGGGGATCCGGAAGGCGTTGTCGGTGACATCACGGAGAGGGCGATTTCTATGTAGATGAGGCAGCGCAGGGGCTGCTGCTTTGCCACGAAAGAGTTCCCGTGCCGTGGGAGCAAGTCTGGGACCGCTGGTCGGACCGGAGAGTCGCAGCTGTGTGTTAGGGCTAGGATGGCTCCGGGATGCGCGTGACGCAAGTGACCTTGCGTGTAAAGGGATACATGATCCCTTAATTCAGGCTCAGGCTGAAGAACTGACCCACTTACGACAGAAGACACAGGAAGGGAGAGGTGTCTGCTACCTTTTTACCCAGCATGTGAAGAACACAGTCAAGTCTTTTGAGGGCCTTCTCAGGAACACTGACATTGCCTACTACCAGAGACAGAGATTCTGTGAGCAAATGGTACAAGGAAGCCAGCTGACAGAGATCCTTGTCAGAAAACTTGCCACAGAATCTTGCTCTCTTACCCAAGCTGGAGTGCAGTGACACGGTCTTGGCTGACTGCAATCTGTGCCTCCTGGGCTCAAGCAATCTTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGTGTGCCACCACACCTGGCTAATGTTTGTATTTTTTGTAGAGATAGGGTTTCTCCATGTTGTCCAGGCTTGTCTTGAACTACTGAGCTGAAGTAATCCACCTGCTTTGGACTCCCAAAGTGCTGGGATTACAGATATGAGCCACTGTGCCTGGCCTGAGAGTTCTTAGTTTCAATCAGTAAGAGA</dnaseq>|
 
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[[Category:Intergenic]][[Category:lnc-RP3-377D14.1.1-1]]
+
[[Category:Intergenic]][[Category:lnc-RP3-377D14.1.1-1]][[Category:NONHSAG002660]][[Category:Transcripts]]

Latest revision as of 15:25, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000432384.1

Source

Gencode19

Same with

lnc-RP3-377D14.1.1-1:1,NONHSAT005740

Classification

intergenic

Length

754 nt

Genomic location

chr1+:143687097..143705763

Exon number

3

Exons

143687097..143687309,143705011..143705246,143705459..143705763

Genome context

Sequence
000001 GACGGGGATC CGGAAGGCGT TGTCGGTGAC ATCACGGAGA GGGCGATTTC TATGTAGATG AGGCAGCGCA GGGGCTGCTG 000080
000081 CTTTGCCACG AAAGAGTTCC CGTGCCGTGG GAGCAAGTCT GGGACCGCTG GTCGGACCGG AGAGTCGCAG CTGTGTGTTA 000160
000161 GGGCTAGGAT GGCTCCGGGA TGCGCGTGAC GCAAGTGACC TTGCGTGTAA AGGGATACAT GATCCCTTAA TTCAGGCTCA 000240
000241 GGCTGAAGAA CTGACCCACT TACGACAGAA GACACAGGAA GGGAGAGGTG TCTGCTACCT TTTTACCCAG CATGTGAAGA 000320
000321 ACACAGTCAA GTCTTTTGAG GGCCTTCTCA GGAACACTGA CATTGCCTAC TACCAGAGAC AGAGATTCTG TGAGCAAATG 000400
000401 GTACAAGGAA GCCAGCTGAC AGAGATCCTT GTCAGAAAAC TTGCCACAGA ATCTTGCTCT CTTACCCAAG CTGGAGTGCA 000480
000481 GTGACACGGT CTTGGCTGAC TGCAATCTGT GCCTCCTGGG CTCAAGCAAT CTTCCCACCT CAGCCTCCCA AGTAGCTGGG 000560
000561 ACTACAGGTG TGTGCCACCA CACCTGGCTA ATGTTTGTAT TTTTTGTAGA GATAGGGTTT CTCCATGTTG TCCAGGCTTG 000640
000641 TCTTGAACTA CTGAGCTGAA GTAATCCACC TGCTTTGGAC TCCCAAAGTG CTGGGATTAC AGATATGAGC CACTGTGCCT 000720
000721 GGCCTGAGAG TTCTTAGTTT CAATCAGTAA GAGA
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Predicted Small Protein

Name ENST00000432384.1_smProtein_590:658
Length 23
Molecular weight 2542.0644
Aromaticity 0.181818181818
Instability index 47.0272727273
Isoelectric point 4.50567626953
Runs 5
Runs residual 0.00909090909091
Runs probability 0.0210740151917
Amino acid sequence MFVFFVEIGFLHVVQACLELLS
Secondary structure LEEEEEELLHHHHHHHHHHHHL
PRMN LHHHHHHHHHHHHHHHHHHHLL
PiMo i?????????????????????