Difference between revisions of "NONHSAT028127"

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sequence = <dnaseq>ATTACTTACGAGAGAAAAATCCAAATTTCTTATTTTAGCATTCAAGGCACTTTACATGCAGGGCTCTACTTCCAAGCTGGGGCATGTGGTTCCAGAGAAAGAGAGGATACCTCAGGACAGTATGATACATCTTACCTAATGtagaagaagagcaacaggccatgtgtgatggtaaatggcagctgacacttgcgacagtatcaagaaggcactaaggaatggtgagaaggatgacttgccctttctaaagtggcatctcagcttgagtctgcagaatgccttgcaaatccagctcagtactgctagataatccatattgacaagagaagctaaagattcagattttctatgtgaagtttcctggttttaaaatgttagcaacaaattccaaatttttacagaacactgtacaggccagaaagaacaatctgtgtgctaccagtttacaaTTAGCTATGCTTCTTCCTCCTCAGACCTGGCATGCCCTTTCCACCCCCTTGCCTTTGCTCTTAGTACCCCGTGTACACTCCAACCTCTTCCACCTACAAATTTCTAAATGCACAGTTCAAATGTTAGTTCTTCAGATTcctgtctctgtaataacacttgcccctttgtataacagttctcatgtatatcttcctattagaccatgagctcctgtggtagaaattgtgtattcattactgtatccctagtgtgcagtaaaggatcacagta</dnaseq>|
 
sequence = <dnaseq>ATTACTTACGAGAGAAAAATCCAAATTTCTTATTTTAGCATTCAAGGCACTTTACATGCAGGGCTCTACTTCCAAGCTGGGGCATGTGGTTCCAGAGAAAGAGAGGATACCTCAGGACAGTATGATACATCTTACCTAATGtagaagaagagcaacaggccatgtgtgatggtaaatggcagctgacacttgcgacagtatcaagaaggcactaaggaatggtgagaaggatgacttgccctttctaaagtggcatctcagcttgagtctgcagaatgccttgcaaatccagctcagtactgctagataatccatattgacaagagaagctaaagattcagattttctatgtgaagtttcctggttttaaaatgttagcaacaaattccaaatttttacagaacactgtacaggccagaaagaacaatctgtgtgctaccagtttacaaTTAGCTATGCTTCTTCCTCCTCAGACCTGGCATGCCCTTTCCACCCCCTTGCCTTTGCTCTTAGTACCCCGTGTACACTCCAACCTCTTCCACCTACAAATTTCTAAATGCACAGTTCAAATGTTAGTTCTTCAGATTcctgtctctgtaataacacttgcccctttgtataacagttctcatgtatatcttcctattagaccatgagctcctgtggtagaaattgtgtattcattactgtatccctagtgtgcagtaaaggatcacagta</dnaseq>|
 
}}
 
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[[Category:Intronic(S)]][[Category:NONHSAG011108]]
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[[Category:Intronic(S)]][[Category:NONHSAG011108]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 20:59, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT028127

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

720 nt

Genomic location

chr12-:50031725..50032926

Exon number

2

Exons

50031725..50032303,50032786..50032926

Genome context

Sequence
000001 ATTACTTACG AGAGAAAAAT CCAAATTTCT TATTTTAGCA TTCAAGGCAC TTTACATGCA GGGCTCTACT TCCAAGCTGG 000080
000081 GGCATGTGGT TCCAGAGAAA GAGAGGATAC CTCAGGACAG TATGATACAT CTTACCTAAT Gtagaagaag agcaacaggc 000160
000161 catgtgtgat ggtaaatggc agctgacact tgcgacagta tcaagaaggc actaaggaat ggtgagaagg atgacttgcc 000240
000241 ctttctaaag tggcatctca gcttgagtct gcagaatgcc ttgcaaatcc agctcagtac tgctagataa tccatattga 000320
000321 caagagaagc taaagattca gattttctat gtgaagtttc ctggttttaa aatgttagca acaaattcca aatttttaca 000400
000401 gaacactgta caggccagaa agaacaatct gtgtgctacc agtttacaaT TAGCTATGCT TCTTCCTCCT CAGACCTGGC 000480
000481 ATGCCCTTTC CACCCCCTTG CCTTTGCTCT TAGTACCCCG TGTACACTCC AACCTCTTCC ACCTACAAAT TTCTAAATGC 000560
000561 ACAGTTCAAA TGTTAGTTCT TCAGATTcct gtctctgtaa taacacttgc ccctttgtat aacagttctc atgtatatct 000640
000641 tcctattaga ccatgagctc ctgtggtaga aattgtgtat tcattactgt atccctagtg tgcagtaaag gatcacagta 000720
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Predicted Small Protein

Name NONHSAT028127_smProtein_371:655
Length 95
Molecular weight 10508.4669
Aromaticity 0.0531914893617
Instability index 44.2308510638
Isoelectric point 10.202331543
Runs 14
Runs residual 0.0201202590194
Runs probability 0.0699964670554
Amino acid sequence MLATNSKFLQNTVQARKNNLCATSLQLAMLLPPQTWHALSTPLPLLLVPRVHSNLFHLQI
SKCTVQMLVLQIPVSVITLAPLYNSSHVYLPIRP
Secondary structure LLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLEEEELLLLLLEELLLLLLLHHHHHH
HHHHHEEEEEELLLEEEEELLLLLLLEEEELLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLL
LLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL
PiMo oooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiii
iiiTTTTTTTTTTTTTTTTTTooooooooooooo