Difference between revisions of "ENST00000447058.2"
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sequence = <dnaseq>GAGATTTTCAAGCACATCTAGGAAGTATTTCAAAAGGTAATTTAGGAAAAATTTCAAAAGATAATCTTTAGGCCCTTCACATGCTCCTATCTTCCAGGTTCTGGAAGCAGCTATCGCAAGTGCTTAAATGTTCCTCCTGTGACTCTGTGACTGTCCAAAGTCCCTGTTTCCAGTTCAGCTTTCTTTGAAAAGCCCTTGAGCTTTAATATCACCATCATGCCTCATTAAAACTCCTATTCACTGGGTGCAGAAGACTGCTTATTACTGAAAGTAATTTGACTAAAACATAAATACTGCAAAATCTGTCTACATACGTCTCTTTGAAACAACCTGAACTCTTCTCTCAATATAAAATTGAGGTGAAATACCAAATTAAGGCACATGGGTCCGTTATTGCCAAAGTGATGGATTTCCTGACAACCATTCCACCCAGAAGATTTTTTTTCCCAGAACTAATAATCCCATCCCCGTTGCTGGTGATTAACTTAATAACGAGCATGACAATCAACAAACAGATTGAAAAGGCAACCTACTCAGAATGGGAGAAAATATGAAACCATATACCAGAGATGAAAGTAATATCCAGAATATATAAAGAATTCCTACAACTTGATAACAAAAACACCCCAATCTAAAAATGGACACAGAATTTAAATAGACATTTCTCCAATGAAGATGGCCACCACACATGTGAAAAGATGCTCAACATCACTAATCATCAAGGGAAATGCAAATCAAAACCACAATAGCACAATGAGATATCATTTCAGACCCCGT</dnaseq>| | sequence = <dnaseq>GAGATTTTCAAGCACATCTAGGAAGTATTTCAAAAGGTAATTTAGGAAAAATTTCAAAAGATAATCTTTAGGCCCTTCACATGCTCCTATCTTCCAGGTTCTGGAAGCAGCTATCGCAAGTGCTTAAATGTTCCTCCTGTGACTCTGTGACTGTCCAAAGTCCCTGTTTCCAGTTCAGCTTTCTTTGAAAAGCCCTTGAGCTTTAATATCACCATCATGCCTCATTAAAACTCCTATTCACTGGGTGCAGAAGACTGCTTATTACTGAAAGTAATTTGACTAAAACATAAATACTGCAAAATCTGTCTACATACGTCTCTTTGAAACAACCTGAACTCTTCTCTCAATATAAAATTGAGGTGAAATACCAAATTAAGGCACATGGGTCCGTTATTGCCAAAGTGATGGATTTCCTGACAACCATTCCACCCAGAAGATTTTTTTTCCCAGAACTAATAATCCCATCCCCGTTGCTGGTGATTAACTTAATAACGAGCATGACAATCAACAAACAGATTGAAAAGGCAACCTACTCAGAATGGGAGAAAATATGAAACCATATACCAGAGATGAAAGTAATATCCAGAATATATAAAGAATTCCTACAACTTGATAACAAAAACACCCCAATCTAAAAATGGACACAGAATTTAAATAGACATTTCTCCAATGAAGATGGCCACCACACATGTGAAAAGATGCTCAACATCACTAATCATCAAGGGAAATGCAAATCAAAACCACAATAGCACAATGAGATATCATTTCAGACCCCGT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-ADAM22-2]][[Category:NONHSAG048146]] | + | [[Category:Intergenic]][[Category:lnc-ADAM22-2]][[Category:NONHSAG048146]][[Category:ENSG00000228113.3]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 15:52, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000447058.2 |
| Source |
Gencode19 |
| Same with |
lnc-ADAM22-2:1,NONHSAT121863 |
| Classification |
intergenic |
| Length |
777 nt |
| Genomic location |
chr7+:87858974..87861089 |
| Exon number |
2 |
| Exons |
87858974..87859275,87860615..87861089 |
| Genome context |
|
| Sequence |
000001 GAGATTTTCA AGCACATCTA GGAAGTATTT CAAAAGGTAA TTTAGGAAAA ATTTCAAAAG ATAATCTTTA GGCCCTTCAC 000080
000081 ATGCTCCTAT CTTCCAGGTT CTGGAAGCAG CTATCGCAAG TGCTTAAATG TTCCTCCTGT GACTCTGTGA CTGTCCAAAG 000160 000161 TCCCTGTTTC CAGTTCAGCT TTCTTTGAAA AGCCCTTGAG CTTTAATATC ACCATCATGC CTCATTAAAA CTCCTATTCA 000240 000241 CTGGGTGCAG AAGACTGCTT ATTACTGAAA GTAATTTGAC TAAAACATAA ATACTGCAAA ATCTGTCTAC ATACGTCTCT 000320 000321 TTGAAACAAC CTGAACTCTT CTCTCAATAT AAAATTGAGG TGAAATACCA AATTAAGGCA CATGGGTCCG TTATTGCCAA 000400 000401 AGTGATGGAT TTCCTGACAA CCATTCCACC CAGAAGATTT TTTTTCCCAG AACTAATAAT CCCATCCCCG TTGCTGGTGA 000480 000481 TTAACTTAAT AACGAGCATG ACAATCAACA AACAGATTGA AAAGGCAACC TACTCAGAAT GGGAGAAAAT ATGAAACCAT 000560 000561 ATACCAGAGA TGAAAGTAAT ATCCAGAATA TATAAAGAAT TCCTACAACT TGATAACAAA AACACCCCAA TCTAAAAATG 000640 000641 GACACAGAAT TTAAATAGAC ATTTCTCCAA TGAAGATGGC CACCACACAT GTGAAAAGAT GCTCAACATC ACTAATCATC 000720 000721 AAGGGAAATG CAAATCAAAA CCACAATAGC ACAATGAGAT ATCATTTCAG ACCCCGT |
Predicted Small Protein
| Name | ENST00000447058.2_smProtein_404:553 |
| Length | 50 |
| Molecular weight | 5796.8368 |
| Aromaticity | 0.122448979592 |
| Instability index | 58.706122449 |
| Isoelectric point | 6.07122802734 |
| Runs | 7 |
| Runs residual | 0.019194704909 |
| Runs probability | 0.00967774497186 |
| Amino acid sequence | MDFLTTIPPRRFFFPELIIPSPLLVINLITSMTINKQIEKATYSEWEKI |
| Secondary structure | LLEELLLLLLLLLLLLEELLLLHHHHHHHHHHHHHHHHHHHHHHHHLLL |
| PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL |
| PiMo | oooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiii |
