Difference between revisions of "NONHSAT055477"
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sequence = <dnaseq>ATTCAGGGAAGGTTTCAAGCAGAAAGATGAACTTGAGTTGGCTTTTGAGAGATTCATAGGATTCCCACAGGCAGAGTGAAATAAGGGAATTTTAGATGAACAAACGCACAGACAAAAGCAGAAATGCAGATGGTGTGACTGGGGGATGGTGAGGGGCTGCTCTGGCTGGAATGGAGGGCTGGCTGCCACAATAGTGGAAATGGTAAATGAGGCAAATAAGGTTGGATTGGTAGGATAGCATCAAGGTTGCCAGCTTATTAAATCACTCTTCCAATATGCTAGCACTGGCCTATTGGGAAAAGTAATGCATCATGTAATCAAACAAAAGGCAAACAGAGGCAAGCTCCAGGAATGGGCACTGTAAACAGGACTCACCCTAGAGTGGCCAGATGTAGACTTTAGATATGTTAATGCAGGTTGAGCATCTCTAATCCGAGGGGGAATGTCTCATATGGTGTCCAAGAAATGGGCACATCTCACAGAGGGCCTAGACTCAGGAGGGCTACAGTATGAGACATTTCCCCTCCCTTGTGAACTTAAAAATGTGGCCAACAATTTTTTTAAAAGATGGTTACCCTGCAGTGCTTTAACTGGACCTATTTAGACAACGCCTTACACACTGGAGAAGGATGATACTTTGTGACTCTAATAAATCTACCAGACAATACTTCTCTCTTTTGGCTGTCTCCTTCCTCTCCAGGGTGATGACAACTCCGTGAGGGTGGAGATTATACATC</dnaseq>| | sequence = <dnaseq>ATTCAGGGAAGGTTTCAAGCAGAAAGATGAACTTGAGTTGGCTTTTGAGAGATTCATAGGATTCCCACAGGCAGAGTGAAATAAGGGAATTTTAGATGAACAAACGCACAGACAAAAGCAGAAATGCAGATGGTGTGACTGGGGGATGGTGAGGGGCTGCTCTGGCTGGAATGGAGGGCTGGCTGCCACAATAGTGGAAATGGTAAATGAGGCAAATAAGGTTGGATTGGTAGGATAGCATCAAGGTTGCCAGCTTATTAAATCACTCTTCCAATATGCTAGCACTGGCCTATTGGGAAAAGTAATGCATCATGTAATCAAACAAAAGGCAAACAGAGGCAAGCTCCAGGAATGGGCACTGTAAACAGGACTCACCCTAGAGTGGCCAGATGTAGACTTTAGATATGTTAATGCAGGTTGAGCATCTCTAATCCGAGGGGGAATGTCTCATATGGTGTCCAAGAAATGGGCACATCTCACAGAGGGCCTAGACTCAGGAGGGCTACAGTATGAGACATTTCCCCTCCCTTGTGAACTTAAAAATGTGGCCAACAATTTTTTTAAAAGATGGTTACCCTGCAGTGCTTTAACTGGACCTATTTAGACAACGCCTTACACACTGGAGAAGGATGATACTTTGTGACTCTAATAAATCTACCAGACAATACTTCTCTCTTTTGGCTGTCTCCTTCCTCTCCAGGGTGATGACAACTCCGTGAGGGTGGAGATTATACATC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG022581]] | + | [[Category:Intergenic]][[Category:NONHSAG022581]][[Category:Transcripts]] |
Latest revision as of 22:25, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055477 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
737 nt |
Genomic location |
chr17+:66120831..66121567 |
Exon number |
1 |
Exons |
66120831..66121567 |
Genome context |
|
Sequence |
000001 ATTCAGGGAA GGTTTCAAGC AGAAAGATGA ACTTGAGTTG GCTTTTGAGA GATTCATAGG ATTCCCACAG GCAGAGTGAA 000080
000081 ATAAGGGAAT TTTAGATGAA CAAACGCACA GACAAAAGCA GAAATGCAGA TGGTGTGACT GGGGGATGGT GAGGGGCTGC 000160 000161 TCTGGCTGGA ATGGAGGGCT GGCTGCCACA ATAGTGGAAA TGGTAAATGA GGCAAATAAG GTTGGATTGG TAGGATAGCA 000240 000241 TCAAGGTTGC CAGCTTATTA AATCACTCTT CCAATATGCT AGCACTGGCC TATTGGGAAA AGTAATGCAT CATGTAATCA 000320 000321 AACAAAAGGC AAACAGAGGC AAGCTCCAGG AATGGGCACT GTAAACAGGA CTCACCCTAG AGTGGCCAGA TGTAGACTTT 000400 000401 AGATATGTTA ATGCAGGTTG AGCATCTCTA ATCCGAGGGG GAATGTCTCA TATGGTGTCC AAGAAATGGG CACATCTCAC 000480 000481 AGAGGGCCTA GACTCAGGAG GGCTACAGTA TGAGACATTT CCCCTCCCTT GTGAACTTAA AAATGTGGCC AACAATTTTT 000560 000561 TTAAAAGATG GTTACCCTGC AGTGCTTTAA CTGGACCTAT TTAGACAACG CCTTACACAC TGGAGAAGGA TGATACTTTG 000640 000641 TGACTCTAAT AAATCTACCA GACAATACTT CTCTCTTTTG GCTGTCTCCT TCCTCTCCAG GGTGATGACA ACTCCGTGAG 000720 000721 GGTGGAGATT ATACATC |
Predicted Small Protein
Name | NONHSAT055477_smProtein_629:718 |
Length | 30 |
Molecular weight | 3309.8752 |
Aromaticity | 0.103448275862 |
Instability index | 47.4344827586 |
Isoelectric point | 9.30181884766 |
Runs | 5 |
Runs residual | 0.0271551724138 |
Runs probability | 0.0293411058118 |
Amino acid sequence | MILCDSNKSTRQYFSLLAVSFLSRVMTTP |
Secondary structure | LEEELLLLLHHHHHHHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |