Difference between revisions of "NONHSAT122805"
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sequence = <dnaseq>tgaggagataagtgacataaactggcatgttctgaaagaatcactctggatgctgtgtggagaaaacactgaaaagAATTCTAGAGTGAAAGTTTCATGAATATAAGAAGCAAGACAAGGAAGTGGCTTATGCTTAAGGCCTTAAAGGCAACCACTGTGACAATCCAGCCATTCTCTGGAGAATTCAGCAGAAAGCCAGTTGGAATCTTTATAGGGGGAGAATAATTGACTCCATtcaagtgttcgctcctgtttcaatcaactatggctgaagagtgaggagacatttggaataaatatggcttctgggggcccattcCTATGGATCAGCAGCTGGCTTCTGGAGGCCCATTCCTGTGAATCGTCGATCTCATAGAAGATAATATTGTTAGAAGGCTTACCTCATTGATGCTGAACATCCTAAAAAGCTTCTGCTGCTTTGAGTCACTGAAAAAGACCAAGAAACATGaatttaaaaaaaaatttcaaatgttataaaataaataatatGAACTCATTATACCTACAATGAATAATTTAAATTCTTCTTTGGTAGTCCAGCATAGGTTTAGaaactatgaaaaccctagaagaaaacctaggcaatgccattcaggacataggcacggacaaagatttcatgacgaagacgccaaaaacaactgcaacaaaagcaaaaattgacagatgggatctcattaaactaaagagcttccatacagcaaaagaagctaccatgagagtgaacagacaacctatagaaagggagaaaaattttgcaatctgttcatctgacaaaggtctaatatccagcatctacaaggaacttaaataaatttacaagaaaaaaacaaacccattagaaaatgggcaaaggacatgaaaagatacttctcaaaagacatacatgtggccaacaatcatacaaaaaaaacctcaacatcactgatgattagaaaaatgctaatcaaaaccacaacgagataccatctcatacctgtcaga</dnaseq>| | sequence = <dnaseq>tgaggagataagtgacataaactggcatgttctgaaagaatcactctggatgctgtgtggagaaaacactgaaaagAATTCTAGAGTGAAAGTTTCATGAATATAAGAAGCAAGACAAGGAAGTGGCTTATGCTTAAGGCCTTAAAGGCAACCACTGTGACAATCCAGCCATTCTCTGGAGAATTCAGCAGAAAGCCAGTTGGAATCTTTATAGGGGGAGAATAATTGACTCCATtcaagtgttcgctcctgtttcaatcaactatggctgaagagtgaggagacatttggaataaatatggcttctgggggcccattcCTATGGATCAGCAGCTGGCTTCTGGAGGCCCATTCCTGTGAATCGTCGATCTCATAGAAGATAATATTGTTAGAAGGCTTACCTCATTGATGCTGAACATCCTAAAAAGCTTCTGCTGCTTTGAGTCACTGAAAAAGACCAAGAAACATGaatttaaaaaaaaatttcaaatgttataaaataaataatatGAACTCATTATACCTACAATGAATAATTTAAATTCTTCTTTGGTAGTCCAGCATAGGTTTAGaaactatgaaaaccctagaagaaaacctaggcaatgccattcaggacataggcacggacaaagatttcatgacgaagacgccaaaaacaactgcaacaaaagcaaaaattgacagatgggatctcattaaactaaagagcttccatacagcaaaagaagctaccatgagagtgaacagacaacctatagaaagggagaaaaattttgcaatctgttcatctgacaaaggtctaatatccagcatctacaaggaacttaaataaatttacaagaaaaaaacaaacccattagaaaatgggcaaaggacatgaaaagatacttctcaaaagacatacatgtggccaacaatcatacaaaaaaaacctcaacatcactgatgattagaaaaatgctaatcaaaaccacaacgagataccatctcatacctgtcaga</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG048578]] | + | [[Category:Intergenic]][[Category:NONHSAG048578]][[Category:Transcripts]] |
Latest revision as of 06:43, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT122805 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1005 nt |
| Genomic location |
chr7-:112593368..112635698 |
| Exon number |
5 |
| Exons |
112593368..112593811,112594658..112594823,112596577..112596766,112626591..112626719,112635623..112635698 |
| Genome context |
|
| Sequence |
000001 tgaggagata agtgacataa actggcatgt tctgaaagaa tcactctgga tgctgtgtgg agaaaacact gaaaagAATT 000080
000081 CTAGAGTGAA AGTTTCATGA ATATAAGAAG CAAGACAAGG AAGTGGCTTA TGCTTAAGGC CTTAAAGGCA ACCACTGTGA 000160 000161 CAATCCAGCC ATTCTCTGGA GAATTCAGCA GAAAGCCAGT TGGAATCTTT ATAGGGGGAG AATAATTGAC TCCATtcaag 000240 000241 tgttcgctcc tgtttcaatc aactatggct gaagagtgag gagacatttg gaataaatat ggcttctggg ggcccattcC 000320 000321 TATGGATCAG CAGCTGGCTT CTGGAGGCCC ATTCCTGTGA ATCGTCGATC TCATAGAAGA TAATATTGTT AGAAGGCTTA 000400 000401 CCTCATTGAT GCTGAACATC CTAAAAAGCT TCTGCTGCTT TGAGTCACTG AAAAAGACCA AGAAACATGa atttaaaaaa 000480 000481 aaatttcaaa tgttataaaa taaataatat GAACTCATTA TACCTACAAT GAATAATTTA AATTCTTCTT TGGTAGTCCA 000560 000561 GCATAGGTTT AGaaactatg aaaaccctag aagaaaacct aggcaatgcc attcaggaca taggcacgga caaagatttc 000640 000641 atgacgaaga cgccaaaaac aactgcaaca aaagcaaaaa ttgacagatg ggatctcatt aaactaaaga gcttccatac 000720 000721 agcaaaagaa gctaccatga gagtgaacag acaacctata gaaagggaga aaaattttgc aatctgttca tctgacaaag 000800 000801 gtctaatatc cagcatctac aaggaactta aataaattta caagaaaaaa acaaacccat tagaaaatgg gcaaaggaca 000880 000881 tgaaaagata cttctcaaaa gacatacatg tggccaacaa tcatacaaaa aaaacctcaa catcactgat gattagaaaa 000960 000961 atgctaatca aaaccacaac gagataccat ctcatacctg tcaga |
Predicted Small Protein
| Name | NONHSAT122805_smProtein_866:955 |
| Length | 30 |
| Molecular weight | 3356.8326 |
| Aromaticity | 0.0344827586207 |
| Instability index | 56.8137931034 |
| Isoelectric point | 9.43011474609 |
| Runs | 6 |
| Runs residual | 0.0073275862069 |
| Runs probability | 0.0429988812341 |
| Amino acid sequence | MGKGHEKILLKRHTCGQQSYKKNLNITDD |
| Secondary structure | LLLLHHHEEELLLLLLLLLHHHHLLLLLL |
| PRMN | - |
| PiMo | - |
