Difference between revisions of "NONHSAT004413"
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sequence = <dnaseq>CAGGACTGCAGGCTGGGGCTCCGCTCCCCGGCGGGAGCCCGCGCGTGGTTCCCAGCGAAGTCCCCGCGCGGCTGGGCCCAGCGTGAGTATTCTCCGCCCGCTGTCCTCCCCCTGGAGGCGGCAGCGCCCGTTTATTTGAGCTTCTAATGTGAGGAAAAACACGGAATGACAAGTGTGGGAAAGAGCAAGCACTAAATTACTGTCAGAAAAATAAACGGAGTAGCACAGTGCTGCTCGGTGATTTACGGGGGCAATTAGTCACCACCCCACGGCGCTGCTGAGGACAGCACGGCAGCAGACAAGTCAGGCCCATGAGGAAGAAGAGGCTTTGCACTGCTCTCCAGACAACTTTTCAAACAACAAGAGAGGATATTTGAGCACATTAGGTTTTGTGTCTTCATTCTGGGTACCTACTCTTCATATTATTCTACCAACTTAATACATAAACATATTTTTAGCACAATATGAACCTGTTCTATGTGTGTTTAAAAGCCTCCAGCAGCAACTTTTTTCTCTCCCACTGTCCAAAGTTGGGTTTTCCCCATCCCTTAAAAAACAAAACAAAAAAACCTTTCTTCACTCCAAATTGTCCCCCTGGTGTGTGGTTTTGGTCTTTCTCATTACTTCTTGCATCTTGCTACATGTTCTGCATTTGCTCAGAGCCACTGGGTGCTAAGGAATTTGGTCTGCTGCTCCTCTGGGAAAGTTTGGTAAGCTGGTACAAGGAGGTGATGAACAAGGCTAAATGAAAATCATACATAAACTTCCCAATATTTGTGAACATGTTCTTTAACATACCATACATAGTTTCTATGTATATGTAACATAGCAAAACAAACTTGCTAAGGTATAATTAATTGGTATGCATGCCTTCATAAATATTCACCATCAGAAGAAACCTAGAATGAAAGGTTGTGAAAGAACCCAGGAATGAGAAAGACTTTATTGACTAAAGGCCATGTCTATGTAGGGGCAACAATGAAGCTGTGGGTGAGCAAATGAAGCTTCATCAGGAGTTTAGTATCCTTATGTAGCATTACCTAAGAATGCTACCATAGTAAATTTCTGAAGTACTTTACCTGTTACAAAGAACGTTTGTAATCTCCTTTTCTTATTTGATCTTGCCCTGGCTTTAGTCAGGAACACCTGCTCAGTTAGAAATGTATTCGGTGGGTATGTACGCAGTTGGAGAATGTGCCCCAACACACGCCGCCTTTGGCCTGTATGTTGGAGTCCTAGAGAGGCAGACAATGTTGATGAGCTTGGTACCAGCATGGTGCGCCATTCATCCGGACACAATTTCTGATAAAGAGGGTCACAACTGGGAGAAACCTCAGATTCTACTTGCTTCTCTTCTCCACGTTATTAGACTTTTTTTCCCCTCTTGAATTTTATAAGCACACTCCTTTTAAAACAATTAATTAATAACGAGCACTGGGATTTGATGTAGAATTGCGTATTTGTAACTGCAATGGCACTGGTTTTCAACTACCCTGTAACAAGGAAGCAATTCTAACCAGCAAAAGAGGCAGACGTGTTTCTGTGCAACATCACAGGCGTGTGAAATTGTTCAGATATTGAGATATCAGGAGTGATATAAATTGGAAATTTAACCAAAAATATTTTCCATCAGTGAACAAAGCCGATTTTAAAGTGCCTCTTGCATTTTTCAGATCTTTCTCTTTCTTTTTCCCAAAGTCACATTGTAGTTTCTGATAAAGGAACACACTGGGAAAACTAAGCACATATTTAA</dnaseq>| | sequence = <dnaseq>CAGGACTGCAGGCTGGGGCTCCGCTCCCCGGCGGGAGCCCGCGCGTGGTTCCCAGCGAAGTCCCCGCGCGGCTGGGCCCAGCGTGAGTATTCTCCGCCCGCTGTCCTCCCCCTGGAGGCGGCAGCGCCCGTTTATTTGAGCTTCTAATGTGAGGAAAAACACGGAATGACAAGTGTGGGAAAGAGCAAGCACTAAATTACTGTCAGAAAAATAAACGGAGTAGCACAGTGCTGCTCGGTGATTTACGGGGGCAATTAGTCACCACCCCACGGCGCTGCTGAGGACAGCACGGCAGCAGACAAGTCAGGCCCATGAGGAAGAAGAGGCTTTGCACTGCTCTCCAGACAACTTTTCAAACAACAAGAGAGGATATTTGAGCACATTAGGTTTTGTGTCTTCATTCTGGGTACCTACTCTTCATATTATTCTACCAACTTAATACATAAACATATTTTTAGCACAATATGAACCTGTTCTATGTGTGTTTAAAAGCCTCCAGCAGCAACTTTTTTCTCTCCCACTGTCCAAAGTTGGGTTTTCCCCATCCCTTAAAAAACAAAACAAAAAAACCTTTCTTCACTCCAAATTGTCCCCCTGGTGTGTGGTTTTGGTCTTTCTCATTACTTCTTGCATCTTGCTACATGTTCTGCATTTGCTCAGAGCCACTGGGTGCTAAGGAATTTGGTCTGCTGCTCCTCTGGGAAAGTTTGGTAAGCTGGTACAAGGAGGTGATGAACAAGGCTAAATGAAAATCATACATAAACTTCCCAATATTTGTGAACATGTTCTTTAACATACCATACATAGTTTCTATGTATATGTAACATAGCAAAACAAACTTGCTAAGGTATAATTAATTGGTATGCATGCCTTCATAAATATTCACCATCAGAAGAAACCTAGAATGAAAGGTTGTGAAAGAACCCAGGAATGAGAAAGACTTTATTGACTAAAGGCCATGTCTATGTAGGGGCAACAATGAAGCTGTGGGTGAGCAAATGAAGCTTCATCAGGAGTTTAGTATCCTTATGTAGCATTACCTAAGAATGCTACCATAGTAAATTTCTGAAGTACTTTACCTGTTACAAAGAACGTTTGTAATCTCCTTTTCTTATTTGATCTTGCCCTGGCTTTAGTCAGGAACACCTGCTCAGTTAGAAATGTATTCGGTGGGTATGTACGCAGTTGGAGAATGTGCCCCAACACACGCCGCCTTTGGCCTGTATGTTGGAGTCCTAGAGAGGCAGACAATGTTGATGAGCTTGGTACCAGCATGGTGCGCCATTCATCCGGACACAATTTCTGATAAAGAGGGTCACAACTGGGAGAAACCTCAGATTCTACTTGCTTCTCTTCTCCACGTTATTAGACTTTTTTTCCCCTCTTGAATTTTATAAGCACACTCCTTTTAAAACAATTAATTAATAACGAGCACTGGGATTTGATGTAGAATTGCGTATTTGTAACTGCAATGGCACTGGTTTTCAACTACCCTGTAACAAGGAAGCAATTCTAACCAGCAAAAGAGGCAGACGTGTTTCTGTGCAACATCACAGGCGTGTGAAATTGTTCAGATATTGAGATATCAGGAGTGATATAAATTGGAAATTTAACCAAAAATATTTTCCATCAGTGAACAAAGCCGATTTTAAAGTGCCTCTTGCATTTTTCAGATCTTTCTCTTTCTTTTTCCCAAAGTCACATTGTAGTTTCTGATAAAGGAACACACTGGGAAAACTAAGCACATATTTAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG002048]] | + | [[Category:Intergenic]][[Category:NONHSAG002048]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 19:32, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004413 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1753 nt |
Genomic location |
chr1-:91296140..91317179 |
Exon number |
2 |
Exons |
91296140..91297753,91317041..91317179 |
Genome context |
|
Sequence |
000001 CAGGACTGCA GGCTGGGGCT CCGCTCCCCG GCGGGAGCCC GCGCGTGGTT CCCAGCGAAG TCCCCGCGCG GCTGGGCCCA 000080
000081 GCGTGAGTAT TCTCCGCCCG CTGTCCTCCC CCTGGAGGCG GCAGCGCCCG TTTATTTGAG CTTCTAATGT GAGGAAAAAC 000160 000161 ACGGAATGAC AAGTGTGGGA AAGAGCAAGC ACTAAATTAC TGTCAGAAAA ATAAACGGAG TAGCACAGTG CTGCTCGGTG 000240 000241 ATTTACGGGG GCAATTAGTC ACCACCCCAC GGCGCTGCTG AGGACAGCAC GGCAGCAGAC AAGTCAGGCC CATGAGGAAG 000320 000321 AAGAGGCTTT GCACTGCTCT CCAGACAACT TTTCAAACAA CAAGAGAGGA TATTTGAGCA CATTAGGTTT TGTGTCTTCA 000400 000401 TTCTGGGTAC CTACTCTTCA TATTATTCTA CCAACTTAAT ACATAAACAT ATTTTTAGCA CAATATGAAC CTGTTCTATG 000480 000481 TGTGTTTAAA AGCCTCCAGC AGCAACTTTT TTCTCTCCCA CTGTCCAAAG TTGGGTTTTC CCCATCCCTT AAAAAACAAA 000560 000561 ACAAAAAAAC CTTTCTTCAC TCCAAATTGT CCCCCTGGTG TGTGGTTTTG GTCTTTCTCA TTACTTCTTG CATCTTGCTA 000640 000641 CATGTTCTGC ATTTGCTCAG AGCCACTGGG TGCTAAGGAA TTTGGTCTGC TGCTCCTCTG GGAAAGTTTG GTAAGCTGGT 000720 000721 ACAAGGAGGT GATGAACAAG GCTAAATGAA AATCATACAT AAACTTCCCA ATATTTGTGA ACATGTTCTT TAACATACCA 000800 000801 TACATAGTTT CTATGTATAT GTAACATAGC AAAACAAACT TGCTAAGGTA TAATTAATTG GTATGCATGC CTTCATAAAT 000880 000881 ATTCACCATC AGAAGAAACC TAGAATGAAA GGTTGTGAAA GAACCCAGGA ATGAGAAAGA CTTTATTGAC TAAAGGCCAT 000960 000961 GTCTATGTAG GGGCAACAAT GAAGCTGTGG GTGAGCAAAT GAAGCTTCAT CAGGAGTTTA GTATCCTTAT GTAGCATTAC 001040 001041 CTAAGAATGC TACCATAGTA AATTTCTGAA GTACTTTACC TGTTACAAAG AACGTTTGTA ATCTCCTTTT CTTATTTGAT 001120 001121 CTTGCCCTGG CTTTAGTCAG GAACACCTGC TCAGTTAGAA ATGTATTCGG TGGGTATGTA CGCAGTTGGA GAATGTGCCC 001200 001201 CAACACACGC CGCCTTTGGC CTGTATGTTG GAGTCCTAGA GAGGCAGACA ATGTTGATGA GCTTGGTACC AGCATGGTGC 001280 001281 GCCATTCATC CGGACACAAT TTCTGATAAA GAGGGTCACA ACTGGGAGAA ACCTCAGATT CTACTTGCTT CTCTTCTCCA 001360 001361 CGTTATTAGA CTTTTTTTCC CCTCTTGAAT TTTATAAGCA CACTCCTTTT AAAACAATTA ATTAATAACG AGCACTGGGA 001440 001441 TTTGATGTAG AATTGCGTAT TTGTAACTGC AATGGCACTG GTTTTCAACT ACCCTGTAAC AAGGAAGCAA TTCTAACCAG 001520 001521 CAAAAGAGGC AGACGTGTTT CTGTGCAACA TCACAGGCGT GTGAAATTGT TCAGATATTG AGATATCAGG AGTGATATAA 001600 001601 ATTGGAAATT TAACCAAAAA TATTTTCCAT CAGTGAACAA AGCCGATTTT AAAGTGCCTC TTGCATTTTT CAGATCTTTC 001680 001681 TCTTTCTTTT TCCCAAAGTC ACATTGTAGT TTCTGATAAA GGAACACACT GGGAAAACTA AGCACATATT TAA |
Predicted Small Protein
Name | NONHSAT004413_smProtein_464:748 |
Length | 95 |
Molecular weight | 10835.8357 |
Aromaticity | 0.18085106383 |
Instability index | 44.9735106383 |
Isoelectric point | 9.13275146484 |
Runs | 10 |
Runs residual | 0.0224329324699 |
Runs probability | 0.0296855679209 |
Amino acid sequence | MNLFYVCLKASSSNFFLSHCPKLGFPHPLKNKTKKPFFTPNCPPGVWFWSFSLLLASCYM FCICSEPLGAKEFGLLLLWESLVSWYKEVMNKAK |
Secondary structure | LLEEEEEEEELLLLHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHE EEELLLLLLHHHHHHHHHHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH HHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTT TTTooooooooooooooooooooooooooooooo |