Difference between revisions of "NONHSAT144758"

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sequence = <dnaseq>GCTGGAGTATGGAGTAGTAAATGATCATGACATCAGGTCAGCTGCAGTTCTCACTGGGACCAATAAACAATAGAAGCAACAACCATAAAGACTTAAGAGGACAAAGGAAACCAAACCTCACTGTGTGTCTTCAAGATCTGTTCACATAGTTGCAGGAAGTTGCTGTAGACAAAGTACATTACTAAAGAATGAAGCCCACCCAGGACATCACAGCAACGAAAGAACTATTTCTGGTAACTGTGGACCAGGTGAGAGCCACACTGTAGAACAGCAGTGCTGCCCTCTCTTCTTTGGCGAATGTTATGAAGACATTCTGATGCACTTAGGATCATGATTCATGTTAAATGTAAATTAATTGTAAAAATAATACATCTTGCTCCAAAATGTGGTGACAATTTAGAAGCTGTCCACATAGCCAGACCACTCTGTAAATCACAGAACCTAGAAAGTAAAAATGTGCCATAATTAGGACAGCAGAAAGTAACAGTAAAATAAAGTTTTAAA</dnaseq>|
 
sequence = <dnaseq>GCTGGAGTATGGAGTAGTAAATGATCATGACATCAGGTCAGCTGCAGTTCTCACTGGGACCAATAAACAATAGAAGCAACAACCATAAAGACTTAAGAGGACAAAGGAAACCAAACCTCACTGTGTGTCTTCAAGATCTGTTCACATAGTTGCAGGAAGTTGCTGTAGACAAAGTACATTACTAAAGAATGAAGCCCACCCAGGACATCACAGCAACGAAAGAACTATTTCTGGTAACTGTGGACCAGGTGAGAGCCACACTGTAGAACAGCAGTGCTGCCCTCTCTTCTTTGGCGAATGTTATGAAGACATTCTGATGCACTTAGGATCATGATTCATGTTAAATGTAAATTAATTGTAAAAATAATACATCTTGCTCCAAAATGTGGTGACAATTTAGAAGCTGTCCACATAGCCAGACCACTCTGTAAATCACAGAACCTAGAAAGTAAAAATGTGCCATAATTAGGACAGCAGAAAGTAACAGTAAAATAAAGTTTTAAA</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG020426]]
+
[[Category:Intergenic]][[Category:NONHSAG020426]][[Category:Transcripts]]

Latest revision as of 03:14, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT144758

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

504 nt

Genomic location

chr17+:657549..658128

Exon number

2

Exons

657549..657571,657648..658128

Genome context

Sequence
000001 GCTGGAGTAT GGAGTAGTAA ATGATCATGA CATCAGGTCA GCTGCAGTTC TCACTGGGAC CAATAAACAA TAGAAGCAAC 000080
000081 AACCATAAAG ACTTAAGAGG ACAAAGGAAA CCAAACCTCA CTGTGTGTCT TCAAGATCTG TTCACATAGT TGCAGGAAGT 000160
000161 TGCTGTAGAC AAAGTACATT ACTAAAGAAT GAAGCCCACC CAGGACATCA CAGCAACGAA AGAACTATTT CTGGTAACTG 000240
000241 TGGACCAGGT GAGAGCCACA CTGTAGAACA GCAGTGCTGC CCTCTCTTCT TTGGCGAATG TTATGAAGAC ATTCTGATGC 000320
000321 ACTTAGGATC ATGATTCATG TTAAATGTAA ATTAATTGTA AAAATAATAC ATCTTGCTCC AAAATGTGGT GACAATTTAG 000400
000401 AAGCTGTCCA CATAGCCAGA CCACTCTGTA AATCACAGAA CCTAGAAAGT AAAAATGTGC CATAATTAGG ACAGCAGAAA 000480
000481 GTAACAGTAA AATAAAGTTT TAAA
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Predicted Small Protein

Name NONHSAT144758_smProtein_20:148
Length 43
Molecular weight 4787.4631
Aromaticity 0.047619047619
Instability index 48.8452380952
Isoelectric point 10.0442504883
Runs 9
Runs residual 0.038125376733
Runs probability 0.04407348525
Amino acid sequence MIMTSGQLQFSLGPINNRSNNHKDLRGQRKPNLTVCLQDLFT
Secondary structure LEELLLLEEEELLLLLLLLLLHHHLLLLLLLLLEEEELLLLL
PRMN -
PiMo -