Difference between revisions of "ENST00000420707.1"
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sequence = <dnaseq>TGGGAGCTTAAGGGCGCCGGCACGCGTTCCCCTGGCGCAGAGCTCGCTAGCCGGGGCGCGGGCTGCCTCCTTGTTCTGGTGTGATCCGAATGTAACGGAGCGGACTTTGGGATCCAGAACCCCGGACTGAGGTTGTGCTTGGCTTGAGGGGCGGGCTGGATTTTTCCTCTTAGGATTTATTTCCCTGGAGACCTCATGAAGAATGATGTGGGTTCTATAGGGTACAGTGTGATCTGGGTCCTGCCTAATCTCCTTTCTAAACTTCAGAAAATCATGTACCTTGGAGTTGTGGAGGCATGTTTATAAGCAGATCTGAGTTTTGCCACACTGGAATTTATTTATTCATTGAACAAATATTTAATACCTACTACAATTCTTAGCCGATATATCAGCACAACTTCTCTGCTCCAACTAGTCTACATTGCAAAGCATCTCCTAGTGTCTTTGGAAGAAGGATCTATGGTGTTATATGTGAACAAAGATGTAGACTAGTAAGGTATCAAGATTTGATGGGGATATCCAGACAACTTGGAGCCAAGTCCCCACAGCTGGATCAGACAACTTTTGGTGACATCTCACAGTGTGGATTATCAAGCCAGTGTATCAGTCTGGAGCCTAGGTTTTTTGCCTTTAGCTTTGCTCAGGATGACTTCTGCTCTTCTATGGCAATACTTGAGAAGCTACAGCTTTGATTAGACGAGAGGCTATTTCAATAACTTTCTCCTGATAAGAAGACCACCGACCGTGGACGGATTCTGGCCAGTTTACAAAGGCTGCATACCATAGGGCAGGGCACCCCACTATGGCAAACACTAATAATGATATTGCTCCTGATTTTGTTTCTGAAGGGAATGCCTCTAAGATTTCTTCATTAATTATAAGAGACTGGGTCTCACTCTGTTGCCC</dnaseq>| | sequence = <dnaseq>TGGGAGCTTAAGGGCGCCGGCACGCGTTCCCCTGGCGCAGAGCTCGCTAGCCGGGGCGCGGGCTGCCTCCTTGTTCTGGTGTGATCCGAATGTAACGGAGCGGACTTTGGGATCCAGAACCCCGGACTGAGGTTGTGCTTGGCTTGAGGGGCGGGCTGGATTTTTCCTCTTAGGATTTATTTCCCTGGAGACCTCATGAAGAATGATGTGGGTTCTATAGGGTACAGTGTGATCTGGGTCCTGCCTAATCTCCTTTCTAAACTTCAGAAAATCATGTACCTTGGAGTTGTGGAGGCATGTTTATAAGCAGATCTGAGTTTTGCCACACTGGAATTTATTTATTCATTGAACAAATATTTAATACCTACTACAATTCTTAGCCGATATATCAGCACAACTTCTCTGCTCCAACTAGTCTACATTGCAAAGCATCTCCTAGTGTCTTTGGAAGAAGGATCTATGGTGTTATATGTGAACAAAGATGTAGACTAGTAAGGTATCAAGATTTGATGGGGATATCCAGACAACTTGGAGCCAAGTCCCCACAGCTGGATCAGACAACTTTTGGTGACATCTCACAGTGTGGATTATCAAGCCAGTGTATCAGTCTGGAGCCTAGGTTTTTTGCCTTTAGCTTTGCTCAGGATGACTTCTGCTCTTCTATGGCAATACTTGAGAAGCTACAGCTTTGATTAGACGAGAGGCTATTTCAATAACTTTCTCCTGATAAGAAGACCACCGACCGTGGACGGATTCTGGCCAGTTTACAAAGGCTGCATACCATAGGGCAGGGCACCCCACTATGGCAAACACTAATAATGATATTGCTCCTGATTTTGTTTCTGAAGGGAATGCCTCTAAGATTTCTTCATTAATTATAAGAGACTGGGTCTCACTCTGTTGCCC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Overlapping(AS)]][[Category:lnc-LCE5A-2]][[Category:NONHSAG002948]] | + | [[Category:Overlapping(AS)]][[Category:lnc-LCE5A-2]][[Category:NONHSAG002948]][[Category:ENSG00000237975.2]][[Category:Transcripts]] |
Latest revision as of 15:04, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000420707.1 |
| Source |
Gencode19 |
| Same with |
lnc-LCE5A-2:1,NONHSAT006468 |
| Classification |
overlapping(AS) |
| Length |
906 nt |
| Genomic location |
chr1+:152161827..152313586 |
| Exon number |
9 |
| Exons |
152161827..152161984,152221371..152221488,152224129..152224234,152274230..152274309,152287382..152287433,152305059..152305224,152307815..152307915,152310465..152310565,152313563..152313586 |
| Genome context |
|
| Sequence |
000001 TGGGAGCTTA AGGGCGCCGG CACGCGTTCC CCTGGCGCAG AGCTCGCTAG CCGGGGCGCG GGCTGCCTCC TTGTTCTGGT 000080
000081 GTGATCCGAA TGTAACGGAG CGGACTTTGG GATCCAGAAC CCCGGACTGA GGTTGTGCTT GGCTTGAGGG GCGGGCTGGA 000160 000161 TTTTTCCTCT TAGGATTTAT TTCCCTGGAG ACCTCATGAA GAATGATGTG GGTTCTATAG GGTACAGTGT GATCTGGGTC 000240 000241 CTGCCTAATC TCCTTTCTAA ACTTCAGAAA ATCATGTACC TTGGAGTTGT GGAGGCATGT TTATAAGCAG ATCTGAGTTT 000320 000321 TGCCACACTG GAATTTATTT ATTCATTGAA CAAATATTTA ATACCTACTA CAATTCTTAG CCGATATATC AGCACAACTT 000400 000401 CTCTGCTCCA ACTAGTCTAC ATTGCAAAGC ATCTCCTAGT GTCTTTGGAA GAAGGATCTA TGGTGTTATA TGTGAACAAA 000480 000481 GATGTAGACT AGTAAGGTAT CAAGATTTGA TGGGGATATC CAGACAACTT GGAGCCAAGT CCCCACAGCT GGATCAGACA 000560 000561 ACTTTTGGTG ACATCTCACA GTGTGGATTA TCAAGCCAGT GTATCAGTCT GGAGCCTAGG TTTTTTGCCT TTAGCTTTGC 000640 000641 TCAGGATGAC TTCTGCTCTT CTATGGCAAT ACTTGAGAAG CTACAGCTTT GATTAGACGA GAGGCTATTT CAATAACTTT 000720 000721 CTCCTGATAA GAAGACCACC GACCGTGGAC GGATTCTGGC CAGTTTACAA AGGCTGCATA CCATAGGGCA GGGCACCCCA 000800 000801 CTATGGCAAA CACTAATAAT GATATTGCTC CTGATTTTGT TTCTGAAGGG AATGCCTCTA AGATTTCTTC ATTAATTATA 000880 000881 AGAGACTGGG TCTCACTCTG TTGCCC |
Predicted Small Protein
| Name | ENST00000420707.1_smProtein_509:691 |
| Length | 61 |
| Molecular weight | 6594.4611 |
| Aromaticity | 0.1 |
| Instability index | 49.5316666667 |
| Isoelectric point | 4.52825927734 |
| Runs | 10 |
| Runs residual | 0.0169326241135 |
| Runs probability | 0.0328652181594 |
| Amino acid sequence | MGISRQLGAKSPQLDQTTFGDISQCGLSSQCISLEPRFFAFSFAQDDFCSSMAILEKLQL |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLHHHLLLLLLEEELLLLEEEEHHHHHLHHHHHHHHHHHLL |
| PRMN | - |
| PiMo | - |
